NO01G03680, NO01G03680 (gene) Nannochloropsis oceanica

Overview
NameNO01G03680
Unique NameNO01G03680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1308
Alignment locationchr1:986867..988174 +

Link to JBrowse

Properties
Property NameValue
DescriptionPeptide chain release factor 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:986867..988174 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003747translation release factor activity
GO:0008135translation factor activity, RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006415translational termination
GO:0016043cellular component organization
Vocabulary: INTERPRO
TermDefinition
IPR000352Pep_chain_release_fac_I_II
IPR005139PCRF
Homology
BLAST of NO01G03680 vs. NCBI_GenBank
Match: EWM29306.1 (peptide chain release factor 1 [Nannochloropsis gaditana])

HSP 1 Score: 667.2 bits (1720), Expect = 3.600e-188
Identity = 343/419 (81.86%), Postives = 381/419 (90.93%), Query Frame = 0
Query:   20 LVRNKVSNYCFVALWLAATASLTQAFLNPAVPAATSVMRPTSRRIKQRA---LHMVLDSFIKTKLDSFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEDVVVNYQEWQKLAEDLVGAKQLFNEAAGDPEMKEMARLEIKELEEKQEMIEKKLVVLMLPTDPLDDRNVMLEIRAGTGGSEAGLFAGDLIDVYQRYGQTLGWRVRIVEESKNDEGGYKNAVLEIQGEKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDDVQVKIDPKDITLTTARSGGSGGQNVNKVETAIDLFHKPSGIRIFCTQERSQLKNKELALTMLRSRLFALEQEKQREAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLGDITNQCLVLEQQEKLEAMQLTNA 436
            +V  ++  +C   L    T  +T AF++P      +++ P+ R I +R    + M LD F++TKL+SFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIE+VVV+YQEWQKLA D+ GAKQLFNEAAGDPEMKEMAR EIK+LEE+QE IEK+LVVLMLP+DPLDD+NVMLEIRAGTGGSEAGLFAGDL+DVYQRYGQ+LGWRVR+VE+S+NDEGGYKNAVLEIQG+KVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVD+VQVKIDPKDITLTTARSGGSGGQNVNKVETA+DL HKP+GIRIFCTQERSQLKNKELA++MLRSRLF LEQEKQR+AVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNL +ITNQCL+LEQQEKLEAMQLTNA
Sbjct:   36 VVAMRLPFHCCCLLGWLTTLIMTHAFVSP------NLVMPSGRSISRRYKDWVSMTLDPFVQTKLESFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEEVVVSYQEWQKLAADMAGAKQLFNEAAGDPEMKEMARAEIKDLEERQEDIEKQLVVLMLPSDPLDDKNVMLEIRAGTGGSEAGLFAGDLVDVYQRYGQSLGWRVRVVEDSRNDEGGYKNAVLEIQGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDEVQVKIDPKDITLTTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMSMLRSRLFDLEQEKQRDAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLEEITNQCLLLEQQEKLEAMQLTNA 448          
BLAST of NO01G03680 vs. NCBI_GenBank
Match: XP_005854782.1 (peptide chain release factor 1 [Nannochloropsis gaditana CCMP526] >EKU21571.1 peptide chain release factor 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 649.8 bits (1675), Expect = 5.900e-183
Identity = 327/357 (91.60%), Postives = 350/357 (98.04%), Query Frame = 0
Query:   79 TKLDSFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEDVVVNYQEWQKLAEDLVGAKQLFNEAAGDPEMKEMARLEIKELEEKQEMIEKKLVVLMLPTDPLDDRNVMLEIRAGTGGSEAGLFAGDLIDVYQRYGQTLGWRVRIVEESKNDEGGYKNAVLEIQGEKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDDVQVKIDPKDITLTTARSGGSGGQNVNKVETAIDLFHKPSGIRIFCTQERSQLKNKELALTMLRSRLFALEQEKQREAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLGDITNQCLVLEQQEKLEAMQLTNA 436
            TKL+SFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIE+VVV+YQEWQKLA D+ GAKQLFNEAAGDPEMKEMAR EIK+LEE+QE IEK+LVVLMLP+DPLDD+NVMLEIRAGTGGSEAGLFAGDL+DVYQRYGQ+LGWRVR+VE+S+NDEGGYKNAVLEIQG+KVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVD+VQVKIDPKDITLTTARSGGSGGQNVNKVETA+DL HKP+GIRIFCTQERSQLKNKELA++MLRSRLF LEQEKQR+AVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNL +ITNQCL+LEQQEKLEAMQLTNA
Sbjct:   11 TKLESFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEEVVVSYQEWQKLAADMAGAKQLFNEAAGDPEMKEMARAEIKDLEERQEDIEKQLVVLMLPSDPLDDKNVMLEIRAGTGGSEAGLFAGDLVDVYQRYGQSLGWRVRVVEDSRNDEGGYKNAVLEIQGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDEVQVKIDPKDITLTTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMSMLRSRLFDLEQEKQRDAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLEEITNQCLLLEQQEKLEAMQLTNA 367          
BLAST of NO01G03680 vs. NCBI_GenBank
Match: AMK98481.1 (plastid peptide chain release factor 1 [Monodopsis sp. MarTras21])

HSP 1 Score: 590.5 bits (1521), Expect = 4.300e-165
Identity = 307/407 (75.43%), Postives = 344/407 (84.52%), Query Frame = 0
Query:   25 VSNYCFVALWLAATASLTQAFLNPAVPAATSVMRPTSRRIKQRALHMVLDSFIKTKLDSFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEDVVVNYQEWQKLAEDLVGAKQLFNEAAGDPEMKEMARLEIKELEEKQEMIEKKLVVLMLPTDPLDDRNVMLEIRAGTGGSEAGLFAGDLIDVYQRYGQTLGWRVRIVEESKNDEGGYKNAVLEIQGEKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDDVQVKIDPKDITLTTARSGGSGGQNVNKVETAIDLFHKPSGIRIFCTQERSQLKNKELALTMLRSRLFALEQEKQREAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLGDITNQCLVLEQQEKLEAMQ 432
            +++     LWLA  A   Q+FL P +      M     R   R+L M LD F+++KLDS  RTY ELTERLGDPDVIANP +LMQVNQERM IE+VV++YQ+WQKL ED+VGAKQLFNEA  D E+KEMAR EIK+LE +Q  IE +LVVLMLP DPLDDRNVMLEIRAGTGGSEAGLFAG+L+DVY RY    GWRVR++E+S+NDEGGYKNAVLEIQG+KVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVA+MPEVDDVQV+ID KDI + TARSGGSGGQNVNKVETA+DL HKP+GIRIFCTQERSQLKNKELA+ +LRSRLF +EQEKQRE++AGQRRSQIGSG RSEKIRTYNWKDSRCTDHRLG NFPLQ FLDGNL  ITNQCL+ EQQEKL  MQ
Sbjct:    5 ITSIVLSVLWLALPA---QSFLPPTLLFHIPSMAWVPAR--GRSLAMALDPFVQSKLDSIKRTYHELTERLGDPDVIANPNSLMQVNQERMKIEEVVLSYQKWQKLGEDMVGAKQLFNEAGNDVELKEMARAEIKDLEAQQGEIEARLVVLMLPQDPLDDRNVMLEIRAGTGGSEAGLFAGNLVDVYTRYATAQGWRVRVIEDSRNDEGGYKNAVLEIQGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDDVQVQIDAKDIEMHTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMQLLRSRLFEMEQEKQRESIAGQRRSQIGSGGRSEKIRTYNWKDSRCTDHRLGQNFPLQTFLDGNLEGITNQCLLQEQQEKLAEMQ 406          
BLAST of NO01G03680 vs. NCBI_GenBank
Match: AMK98477.1 (plastid peptide chain release factor 1 [Vischeria sp. CAUP Q 202])

HSP 1 Score: 547.7 bits (1410), Expect = 3.200e-152
Identity = 281/374 (75.13%), Postives = 320/374 (85.56%), Query Frame = 0
Query:   63 RIKQRALHMVLDSFIKTKLDSFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEDVVVNYQEWQKLAEDLVGAKQLFNEAA-GDPEMKEMARLEIKELEEKQEMIEKKLVVLMLPTDPLDDRNVMLEIRAGTGGSEAGLFAGDLIDVYQRYGQTLGWRVRIVEESKNDEGGYKNAVLEIQGEKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDDVQVKIDPKDITLTTARSGGSGGQNVNKVETAIDLFHKPSGIRIFCTQERSQLKNKELALTMLRSRLFALEQEKQREAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLGDITNQCLVLEQQEKLEAMQLTNA 436
            R  +R L M L+ F+KTKLD   R+YKELTERLGDPDVI +P TLM VNQER  IE VVV YQ+++K  EDL+GAKQLFNEA   DPE++EMAR EIK LE +Q+ +EK+L+VLMLP DP+DDRNVMLEIRAGTGG EA LFAGDL+DVY RY Q  GWR R+V E+++D+GGYK AVLE+ G+KVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVD+VQV+IDPKDI + TARSGGSGGQNVNKVETA+DL HKP+GIRIFCTQERSQLKNKELA+ +LRS+L+ +E EKQ   V GQRRSQIGSG+RSEKIRTYNWKDSRCTDHRLG NFPLQ  L+G L DITNQCL+ EQQEKLEA+QL  A
Sbjct:   29 RPARRWLSMALEPFVKTKLDGIERSYKELTERLGDPDVIKSPQTLMHVNQERSKIEGVVVAYQQYKKNDEDLLGAKQLFNEAGQEDPELREMARDEIKGLEVQQDDLEKQLMVLMLPKDPMDDRNVMLEIRAGTGGDEASLFAGDLVDVYSRYAQIQGWRSRMVSEARSDDGGYKMAVLEVHGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDEVQVRIDPKDIEMHTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMQILRSKLYEMEVEKQMNEVTGQRRSQIGSGARSEKIRTYNWKDSRCTDHRLGQNFPLQTVLEGKLEDITNQCLLSEQQEKLEALQLQKA 402          
BLAST of NO01G03680 vs. NCBI_GenBank
Match: AMK98475.1 (plastid peptide chain release factor 1 [Trachydiscus minutus])

HSP 1 Score: 526.6 bits (1355), Expect = 7.600e-146
Identity = 268/401 (66.83%), Postives = 320/401 (79.80%), Query Frame = 0
Query:   30 FVALWLAATASLTQAFLNPAVPAATSVMRPTSRRIKQRALHMVLDSFIKTKLDSFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEDVVVNYQEWQKLAEDLVGAKQLFNEAAGDPEMKEMARLEIKELEEKQEMIEKKLVVLMLPTDPLDDRNVMLEIRAGTGGSEAGLFAGDLIDVYQRYGQTLGWRVRIVEESKNDEGGYKNAVLEIQGEKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDDVQVKIDPKDITLTTARSGGSGGQNVNKVETAIDLFHKPSGIRIFCTQERSQLKNKELALTMLRSRLFALEQEKQREAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLGDITNQCLVLEQQEKLEAM 431
            F A   A +  L+Q F   A P     + P     K+  L M LD F+  KLD   R + E+TERL DPDVI NP    ++NQER  IE+VV  Y+ W+KL ++L  AK L  E+  DP+M+EMARLE+K+L+  +E +E +L++LMLP DP+DD+NVMLEIRAGTGGSEAGLFAGDLIDVY R+GQT GW+VR+++ES+NDEGGYK AVLEIQG+KVYSK+KFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVD+V VKIDPK+I + TARSGGSGGQNVNKVETA+DL HKP+GIRIFCTQERSQLKNKELA+T+LRS+L+ +E EKQ+E + GQRRSQIGSG RSEKIRTYNWKDSRCTDHRLG NF L  FL G + ++ NQCL++EQ EKLE M
Sbjct:   24 FAAPPRARSLHLSQGFKGVAPP-----LGPYYHGGKRGRLCMALDDFVVNKLDGILRAFTEMTERLADPDVINNPNLSREINQERTKIEEVVGAYEHWRKLGQELEDAKNLLMESGDDPDMREMARLEVKQLDSSREELEDRLMILMLPQDPMDDKNVMLEIRAGTGGSEAGLFAGDLIDVYTRFGQTQGWKVRMIDESRNDEGGYKTAVLEIQGDKVYSKMKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDEVTVKIDPKEIEMHTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMTLLRSKLYEMELEKQQEQITGQRRSQIGSGGRSEKIRTYNWKDSRCTDHRLGQNFNLDKFLSGEIDEMINQCLLMEQNEKLEQM 419          
BLAST of NO01G03680 vs. NCBI_GenBank
Match: CBJ32429.1 (peptide chain release factor 1 [Ectocarpus siliculosus])

HSP 1 Score: 465.3 bits (1196), Expect = 2.100e-127
Identity = 230/363 (63.36%), Postives = 293/363 (80.72%), Query Frame = 0
Query:   67 RALHMVLDSFIKTKLDSFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEDVVVNYQEWQKLAEDLVGAKQLFNE---AAGDPEMKEMARLEIKELEEKQEMIEKKLVVLMLPTDPLDDRNVMLEIRAGTGGSEAGLFAGDLIDVYQRYGQTLGWRVRIVEESKNDEGGYKNAVLEIQGEKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDDVQVKIDPKDITLTTARSGGSGGQNVNKVETAIDLFHKPSGIRIFCTQERSQLKNKELALTMLRSRLFALEQEKQREAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGN-LGDITNQCLVLEQQE 426
            RAL M LD F+  +L    RT+ ELTERLGDPDV+ANP  +M+V+QER ++E++V  Y E+ K AEDL GAK++F E   A GD EMKEMAR EI++LEE  E +E K+ +L+LPTDP DDRNVMLEIRAGTGG EA L+A +L+ VY++Y    GW ++++E +  + GG++  + E+ G+KVYSKLK+EAGVHRVQRVPATETQGRVHTSTATVA+MPEVD+V V I P+DI + TARSGGSGGQNVNKVE+A+DLFHKP+GIRIFCTQERSQLKN+E+A+ +LRSR++ +E EKQ+   +G R++Q+GSGSRSEKIRTYNWKDSRC+DHR+G NFPL  FL G+ L D+   C++L+QQE
Sbjct:   66 RALGMALDDFVLEQLSGIDRTFNELTERLGDPDVLANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAKEMFTESSGAGGDAEMKEMAREEIRDLEEVMEALETKMKLLLLPTDPNDDRNVMLEIRAGTGGDEAALWAAELLGVYKKYALEQGWSLKVIESAMVEAGGFRTVIAEVNGDKVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIEIKTARSGGSGGQNVNKVESAVDLFHKPTGIRIFCTQERSQLKNREVAMKLLRSRVYDIELEKQQAETSGNRKAQVGSGSRSEKIRTYNWKDSRCSDHRIGKNFPLNNFLSGSGLDDMIGACILLDQQE 428          
BLAST of NO01G03680 vs. NCBI_GenBank
Match: GAX20416.1 (peptide chain release factor 1 [Fistulifera solaris])

HSP 1 Score: 457.6 bits (1176), Expect = 4.300e-125
Identity = 237/398 (59.55%), Postives = 305/398 (76.63%), Query Frame = 0
Query:   33 LWLAATASLTQAFLNPAVPAATSVMRPTSRRIKQRALHMVLDSFIKTKLDSFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEDVVVNYQEWQKLAEDLVGAKQLFNEAAGDPEMKEMARLEIKELEEKQEMIEKKLVVLMLPTDPLDDRNVMLEIRAGTGGSEAGLFAGDLIDVYQRYGQTLGWRVRIVEESKNDEGGYKNAVLEIQGEKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDDVQVKIDPKDITLTTARSGGSGGQNVNKVETAIDLFHKPSGIRIFCTQERSQLKNKELALTMLRSRLFALEQEKQREAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLGDITNQCLVLEQQEKLEAM 431
            L  A+ A  T AF++ +  +   ++RP S       L MVLD  +  +L++  R+Y+ LTERLGDPDVIA+ + L QV  +R   EDVV  Y+E++ L ED  GAK+L      DP+MKEMAR E+KE+E K E +EK++ VL+LP DP DDRNV+LEIRAGTGGSEA +FAGDL+DVY++Y  + GW+  +++ +  D+GGYKNAVL+I+G++VYSKLK+EAGVHRVQRVPATE+QGRVHTSTATVA+MPE D+V VKIDPKDI ++T RSGG+GGQNVNKVETA+DL HKP+GIRI CTQERSQLKNKELA+ ML S+L+ LE EK+      +R SQ+G+GSRSEKIRTYNWKDSRC+DHRLG NFPLQ FL G++  + +  +  +Q+EKL  +
Sbjct:    4 LLFASAAWQTAAFVHLSNGSPPFLLRPLS------TLQMVLDDSMMDRLENIRRSYQALTERLGDPDVIADSSLLRQVMSDRAQSEDVVAAYEEYKSLGEDYAGAKELL----ADPDMKEMAREEMKEIEPKMEELEKRIKVLLLPRDPNDDRNVLLEIRAGTGGSEANIFAGDLLDVYRKYITSQGWQSTLIDAAPGDDGGYKNAVLDIKGDRVYSKLKWEAGVHRVQRVPATESQGRVHTSTATVAIMPECDEVDVKIDPKDIEMSTMRSGGAGGQNVNKVETAVDLLHKPTGIRIKCTQERSQLKNKELAMKMLMSKLYDLENEKREMEERARRGSQVGTGSRSEKIRTYNWKDSRCSDHRLGQNFPLQQFLSGDIDGMISAMIAKDQEEKLREL 391          
BLAST of NO01G03680 vs. NCBI_GenBank
Match: GAX26856.1 (peptide chain release factor 1 [Fistulifera solaris])

HSP 1 Score: 454.5 bits (1168), Expect = 3.600e-124
Identity = 236/398 (59.30%), Postives = 305/398 (76.63%), Query Frame = 0
Query:   33 LWLAATASLTQAFLNPAVPAATSVMRPTSRRIKQRALHMVLDSFIKTKLDSFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEDVVVNYQEWQKLAEDLVGAKQLFNEAAGDPEMKEMARLEIKELEEKQEMIEKKLVVLMLPTDPLDDRNVMLEIRAGTGGSEAGLFAGDLIDVYQRYGQTLGWRVRIVEESKNDEGGYKNAVLEIQGEKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDDVQVKIDPKDITLTTARSGGSGGQNVNKVETAIDLFHKPSGIRIFCTQERSQLKNKELALTMLRSRLFALEQEKQREAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLGDITNQCLVLEQQEKLEAM 431
            L  A+ A  T AF++ +     S++  +S  +K     MVLD  +  +L++  R+Y+ LTERLGDPDVIA+ + L QV  +R   EDVV  Y+E++ L ED  GAK+L      DP+MKEMAR E+KE+E K E +EK++ VL+LP DP DDRNV+LEIRAGTGGSEA +FAGDL+DVY++Y  + GW+  +++ +  D+GGYKNAVL+I+G++VYSKLK+EAGVHRVQRVPATE+QGRVHTSTATVA+MPE D+V VKIDPKDI ++T RSGG+GGQNVNKVETA+DL HKP+GIRI CTQERSQLKNKELA+ ML S+L+ LE EK+      +R SQ+G+GSRSEKIRTYNWKDSRC+DHRLG NFPLQ FL G++  + +  +  +Q+EKL  +
Sbjct:    4 LLFASAAWQTAAFVHLSNNGPPSILVRSSSTLK-----MVLDDSMMDRLENIRRSYQALTERLGDPDVIADSSLLRQVMSDRAQSEDVVAAYEEYKSLGEDYAGAKELL----ADPDMKEMAREEMKEIEPKMEELEKRIKVLLLPRDPNDDRNVLLEIRAGTGGSEANIFAGDLLDVYRKYITSQGWQSTLIDAAPGDDGGYKNAVLDIKGDRVYSKLKWEAGVHRVQRVPATESQGRVHTSTATVAIMPECDEVDVKIDPKDIEMSTMRSGGAGGQNVNKVETAVDLLHKPTGIRIKCTQERSQLKNKELAMKMLMSKLYDLENEKREIEERARRGSQVGTGSRSEKIRTYNWKDSRCSDHRLGQNFPLQQFLSGDIDGMISAMIAKDQEEKLREL 392          
BLAST of NO01G03680 vs. NCBI_GenBank
Match: WP_002759621.1 (peptide chain release factor 1 [Microcystis aeruginosa] >CCH97186.1 Peptide chain release factor 1 [Microcystis aeruginosa PCC 9717])

HSP 1 Score: 453.8 bits (1166), Expect = 6.200e-124
Identity = 218/357 (61.06%), Postives = 286/357 (80.11%), Query Frame = 0
Query:   74 DSFIKTKLDSFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEDVVVNYQEWQKLAEDLVGAKQLFNEAAGDPEMKEMARLEIKELEEKQEMIEKKLVVLMLPTDPLDDRNVMLEIRAGTGGSEAGLFAGDLIDVYQRYGQTLGWRVRIVEESKNDEGGYKNAVLEIQGEKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDDVQVKIDPKDITLTTARSGGSGGQNVNKVETAIDLFHKPSGIRIFCTQERSQLKNKELALTMLRSRLFALEQEKQREAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLGDITNQCLVLEQQEKLEAM 431
            +S++  KL S  +TYKELT RL DPDV  NP  L ++ + R ++E+ V  Y+ WQK  EDL+GAKQ+F E+A DPE++EMA LE+ ELEEK   +E +L +L+LP DPLD++N+MLEIRAGTGG EA ++AGDL+ +Y +Y +T  W+V ++ ES  D GG+K A+LEI+G+ VYSKLKFEAGVHRVQRVP TE  GRVHTSTATVA+MPEVDDV+V IDPKDI LTTARSGG+GGQNVNKVETA+DL HKP+GIR+FCT+ERSQL+N+E A+ +LR++L+ ++ ++Q+EAV+  RRSQ+G+GSRSEKIRTYN+KD+R TDHRL  NF L   LDG++ ++   C+  +QQEKLE +
Sbjct:    3 ESYLLDKLQSVEQTYKELTRRLADPDVTGNPGELHRLAKSRASLEETVNTYEIWQKSQEDLIGAKQIFKESASDPELREMAALEVAELEEKIATLEDQLTILLLPRDPLDEKNIMLEIRAGTGGDEASIWAGDLVRLYSKYAETQNWKVSLLSESPADMGGFKEAILEIKGDNVYSKLKFEAGVHRVQRVPLTEASGRVHTSTATVAIMPEVDDVEVHIDPKDIELTTARSGGAGGQNVNKVETAVDLIHKPTGIRVFCTEERSQLQNRERAMQILRAKLYDMKLQEQQEAVSSMRRSQVGTGSRSEKIRTYNYKDNRLTDHRLNQNFSLDRILDGDIEEVIQSCIAKDQQEKLEEL 359          
BLAST of NO01G03680 vs. NCBI_GenBank
Match: WP_061430851.1 (peptide chain release factor 1 [Microcystis aeruginosa] >KXS92994.1 peptide chain release factor 1 [Microcystis aeruginosa NIES-88])

HSP 1 Score: 453.4 bits (1165), Expect = 8.100e-124
Identity = 218/354 (61.58%), Postives = 285/354 (80.51%), Query Frame = 0
Query:   74 DSFIKTKLDSFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEDVVVNYQEWQKLAEDLVGAKQLFNEAAGDPEMKEMARLEIKELEEKQEMIEKKLVVLMLPTDPLDDRNVMLEIRAGTGGSEAGLFAGDLIDVYQRYGQTLGWRVRIVEESKNDEGGYKNAVLEIQGEKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDDVQVKIDPKDITLTTARSGGSGGQNVNKVETAIDLFHKPSGIRIFCTQERSQLKNKELALTMLRSRLFALEQEKQREAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLGDITNQCLVLEQQEKL 428
            +S++  KL S  +TYKELT RL DPDV  NP  L ++ + R ++E+ V  Y+ WQK  EDL+GAKQ+F E+A DPE++EMA LE+ ELEEK   +E +L +L+LP DPLD++N+MLEIRAGTGG EA ++AGDL+ +Y +Y +T  W+V ++ ES+ D GG+K A+LEI+G+ VYSKLKFEAGVHRVQRVP TE  GRVHTSTATVA+MPEVDDV+V IDPKDI LTTARSGG+GGQNVNKVETA+DL HKP+GIR+FCT+ERSQL+N+E A+ +LR++L+ ++ ++Q+EAV+  RRSQ+G+GSRSEKIRTYN+KD+R TDHRL  NF L   LDG++ D+   C+  +QQEKL
Sbjct:    3 ESYLLDKLQSVEQTYKELTRRLADPDVTGNPGELHRLAKSRASLEETVNTYEIWQKSQEDLIGAKQIFKESASDPELREMAALEVAELEEKIATLEDQLTILLLPRDPLDEKNIMLEIRAGTGGDEASIWAGDLVRLYSKYAETQNWKVSLLSESQADMGGFKEAILEIKGDNVYSKLKFEAGVHRVQRVPLTEASGRVHTSTATVAIMPEVDDVEVHIDPKDIELTTARSGGAGGQNVNKVETAVDLIHKPTGIRVFCTEERSQLQNRERAMQILRAKLYDMKLQEQQEAVSSMRRSQVGTGSRSEKIRTYNYKDNRLTDHRLNQNFSLDRILDGDIEDVIQSCIAKDQQEKL 356          
The following BLAST results are available for this feature:
BLAST of NO01G03680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29306.13.600e-18881.86peptide chain release factor 1 [Nannochloropsis ga... [more]
XP_005854782.15.900e-18391.60peptide chain release factor 1 [Nannochloropsis ga... [more]
AMK98481.14.300e-16575.43plastid peptide chain release factor 1 [Monodopsis... [more]
AMK98477.13.200e-15275.13plastid peptide chain release factor 1 [Vischeria ... [more]
AMK98475.17.600e-14666.83plastid peptide chain release factor 1 [Trachydisc... [more]
CBJ32429.12.100e-12763.36peptide chain release factor 1 [Ectocarpus silicul... [more]
GAX20416.14.300e-12559.55peptide chain release factor 1 [Fistulifera solari... [more]
GAX26856.13.600e-12459.30peptide chain release factor 1 [Fistulifera solari... [more]
WP_002759621.16.200e-12461.06peptide chain release factor 1 [Microcystis aerugi... [more]
WP_061430851.18.100e-12461.58peptide chain release factor 1 [Microcystis aerugi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007936NSK007936Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03680.1NO01G03680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577142gene_377Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100152g12gene1327Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03680.1NO01G03680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03680 ID=NO01G03680|Name=NO01G03680|organism=Nannochloropsis oceanica|type=gene|length=1308bp
ATGCCGAGCAGCATCAGTACAAGCAACAGCGGCGGCAGTGCCAAGCCAGG
GTGGGCCCTCGTCCGTAACAAGGTCTCAAATTATTGTTTTGTTGCACTAT
GGTTGGCAGCGACCGCCTCTCTAACCCAAGCCTTCCTTAATCCTGCCGTC
CCCGCCGCCACGTCCGTGATGAGGCCCACTTCGCGAAGAATAAAGCAGCG
CGCTCTGCACATGGTGTTAGACTCGTTTATCAAGACCAAACTCGACAGCT
TCTCCCGCACGTACAAGGAGTTGACCGAGCGCCTGGGGGACCCGGATGTG
ATTGCCAACCCTACCACGCTCATGCAGGTGAACCAAGAGCGCATGAACAT
TGAAGACGTTGTGGTGAATTACCAGGAATGGCAAAAACTCGCAGAGGACT
TGGTGGGGGCCAAGCAACTGTTCAATGAAGCAGCAGGGGACCCGGAAATG
AAAGAGATGGCACGATTGGAAATCAAGGAGCTGGAGGAGAAACAGGAAAT
GATTGAGAAGAAGCTTGTAGTGTTGATGCTGCCCACTGACCCCTTGGACG
ACCGCAACGTGATGTTGGAAATTCGGGCGGGCACGGGAGGGAGCGAGGCA
GGACTATTTGCTGGGGATCTGATCGATGTTTATCAGCGGTATGGACAGAC
TTTGGGCTGGCGGGTGCGCATCGTTGAAGAGTCCAAGAACGACGAAGGAG
GGTACAAGAATGCGGTGTTGGAGATCCAGGGAGAAAAAGTCTATTCGAAG
CTTAAGTTTGAGGCGGGCGTGCATCGTGTGCAGCGAGTACCGGCGACTGA
GACACAGGGGCGGGTACATACCAGTACTGCGACTGTGGCCGTCATGCCTG
AGGTGGACGATGTGCAAGTGAAGATTGACCCCAAGGATATAACATTGACA
ACGGCCCGCTCAGGGGGCTCGGGGGGACAGAACGTGAACAAGGTCGAAAC
GGCAATTGACCTATTTCACAAACCCTCAGGCATCCGTATTTTCTGCACGC
AAGAGCGGTCGCAGCTCAAGAATAAGGAGCTGGCGTTGACCATGTTAAGG
TCACGTTTGTTTGCGTTGGAGCAGGAGAAGCAACGTGAGGCGGTGGCAGG
GCAGCGGCGATCGCAGATCGGCTCGGGGAGTAGGTCAGAGAAGATTAGGA
CGTATAATTGGAAGGATAGTCGGTGCACTGATCACAGGCTGGGGACGAAT
TTTCCGTTGCAAATGTTCTTGGATGGGAATTTGGGAGATATCACCAACCA
GTGTTTGGTGCTAGAGCAGCAGGAGAAGCTGGAAGCGATGCAATTGACTA
ATGCGTAG
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protein sequence of NO01G03680.1

>NO01G03680.1-protein ID=NO01G03680.1-protein|Name=NO01G03680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MPSSISTSNSGGSAKPGWALVRNKVSNYCFVALWLAATASLTQAFLNPAV
PAATSVMRPTSRRIKQRALHMVLDSFIKTKLDSFSRTYKELTERLGDPDV
IANPTTLMQVNQERMNIEDVVVNYQEWQKLAEDLVGAKQLFNEAAGDPEM
KEMARLEIKELEEKQEMIEKKLVVLMLPTDPLDDRNVMLEIRAGTGGSEA
GLFAGDLIDVYQRYGQTLGWRVRIVEESKNDEGGYKNAVLEIQGEKVYSK
LKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDDVQVKIDPKDITLT
TARSGGSGGQNVNKVETAIDLFHKPSGIRIFCTQERSQLKNKELALTMLR
SRLFALEQEKQREAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTN
FPLQMFLDGNLGDITNQCLVLEQQEKLEAMQLTNA*
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Synonyms
Publications