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Properties
| Property Name | Value |
|---|
| Description | Zn(2)-C6 fungal-type DNA-binding domain protein |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr1 | genome | chr1:769956..774218 + |
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003677 | DNA binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006357 | regulation of transcription by RNA polymerase II |
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
Homology
BLAST of NO01G02940 vs. NCBI_GenBank
Match: EWM29230.1 (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana]) HSP 1 Score: 318.2 bits (814), Expect = 5.600e-83 Identity = 190/369 (51.49%), Postives = 238/369 (64.50%), Query Frame = 0
Query: 246 GRGSDDGSVCIIRSGDGAVSMANARKGRMEGNTNEHVSSNSI--SSSNDGDIKATSHGF-----NTTRMINHDAEPV-----AAAAAAGAANVTATEALNTV-NGAAAVMEAVSPSSTPLQMKGHLISILSGGDVAVERTRHLLTSWHLWSLEGGGLSXXXXXXXXXXXXXXCGPVGESTVKAEPGQ-AKEDLRELANLIQLTLPPSVAAWAKSRG---AMGGTVAATEEQEQVQSFLDMCVDDDGSAICSAVYSGGRLQLTLNSRFAAMYMTLEELETTVARDRLRPELVWRQLLSPECFSAYDEALCQAYFKGQNLGGEACEIIKCVDRFGLEMPCFMRLRIFASSQGTITASVIFLLPLQLSQLVE 598
G G D I G G +A G+ ++ +NS+ SSS G T + F + + + + E V ++ AG+ + TA A N +A + +T L+M G +++LS G+VAVERTRHLLTSWHLWS+E + KA Q AKEDL E+A L++L+LP SVA W +SRG G ++A EE+EQVQSFLDMC DDDGSAICSAVY GGRLQLTLNSRFAAM+MTLEE+E T++++ +RPELVWR+LLSPECF AY+EALCQAYF+GQNLGGE CEIIKCVDRFGLE+PCFMR+RIFASS G+ITASVI LLPLQLS+L+E
Sbjct: 541 GEGPQDSRASGIAGGAG-----SATNGKESQRSDSACINNSVSESSSERGSAMVTYNNFRGPPADACEVFHSETERVGFLGGGSSTLAGSDHETARSACTKKHNSSARSFASAGGENTTLEMTGPFLNLLSSGEVAVERTRHLLTSWHLWSVE----------------------TRNANAKAHVDQEAKEDLEEVAKLVRLSLPSSVAEWVESRGPQVTSGASMALLEEEEQVQSFLDMCADDDGSAICSAVYCGGRLQLTLNSRFAAMFMTLEEMEMTISQEIVRPELVWRRLLSPECFVAYNEALCQAYFRGQNLGGEVCEIIKCVDRFGLELPCFMRVRIFASSHGSITASVILLLPLQLSRLLE 882
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G02940 ID=NO01G02940|Name=NO01G02940|organism=Nannochloropsis oceanica|type=gene|length=4263bp
GTCGACATATAGCTGTTTTTTTGTCAGGAAGTTCCCGTCTTCGTTAAATG
TGTGCCTTGCTGAGGCTATTGGAGATGAGGCTCGATTCACACAGCTCCTA
TTCGTTCATCTGTGTCCTGTGCGAGCAAAATATACCCTCTTCGTTGGCTT
CTCTGGGAGTGTTGGCGGGCTGGGATGGACCGATTCGTCACTGACGTAAA
GAGTGAGAGTTTAGGGGTCGATGTCACTTTTCCACGAGTAGTGTAGTTCG
ATGTCCTCGTAGTTCATATTTATGTCAAGTTATCGGTAATGAGTGAGTGT
AATCCGAGAACCATGTCAGATGCGGCCGATCCCGCGTTGCGGCCACGGTC
AAGTTTGTCCTCAAACGACGAAAAGCTTAAGCAAGCTCGACAGAAAGCTG
CGAGCTCATCGAAGTTGAGAGGAAATTCCTTTGGACGACTGAGTCGAACC
GTAAAAATATACGCCTCCGAACAAGGTGTCATTTTTCACAAGTTTTCGGG
AAAAACGAGACCGAAGAAATCGAAGCATATGGTCCAATACGTGGACTCCC
GACAGCTGCGGCTCCGAGGCCTCAAGTACATCGTCTTGTCTTGGGTACCC
TTAAATATCCCTCACAATGGCAGCCAGCCAAAAAGTGGCCCTGCATCAAA
TACAATAGGCATTATTATGTGACAGCCCGACTTAGTAAGACTTGCACCCG
GAATCCGTGGCTTTTGCAAAAGCAACTAATTGGAGACTAGCCCTGGAAAT
CGGATGTCGTACGCGTTGGTCTTCAGTGCTGAAGGCGGTCGGCCGACCTT
GACTCGTGGCCGCGTCAACCCGCATTGATTATTTCTTGGCAGTCATTGAT
AACTCATGGAAAATCCCCCACAGTTTTACCCCAGGCCTCTCTCTGTCTGG
GTGAGGATGCAGCCGCGGCCGTTGAGGGGGCGAGATTAGAAAAAAAGCAT
CAAAAGCACCTTGCATTGGCCGCATATTGGACATAGGGCCATCGCATTTG
AGGCACCAAAGTGACTTTGGAGTTATGCCCTGTTTATAAGGGGTCTCTCT
CTGTGATCTTTGTTGTGGTGCCCTCCTGACCGTCGCTCCACGCTGGCCAG
TGTTCCATAAAGCCTCTTGGACCGACGCCACCCGAGAGCAATTTCTTTCG
AGTCGCATGAAGGAGGACCACCTCGTCAGAAACCAGCGGAGTCTGGCGTT
TAAGAGTTTCGAATTTTTGTGTGGACTCCAAAAGGGGGCACGGTGTCTGG
TTTTTAATTCATCCTGCCCTTCGATTGCCTCACCCACCTTCCCTAAACGC
CTATATATATATATAGAGAGAGAGAGAGAGAGCCTCCTCCTGCTTCACTC
CCTACATGACTCCCTTTCTAATGCATTATCCACCTTCTCCTTCCTTGCAC
AGGAAGCAACGTGATGGACACCACTTGTTTGAGCTGCTTTCGCTCGCACG
TGAAATGCGACAAGACACTGCCATGCCGTCGATGCATCAGGTTGAACCTA
AAATGCGTGGCCAACCCCCGTCCCCGCGGAAGGCCCAAGAAGTCCTCCTT
TGAATCAAATGCCACACGTCCCGACAAGGAGGCGCGAAATTGTCATCGCC
ACGGAGGTGGCGGGCATGGTGACGGGGGAGGGGGTTTGATGGGAGGATCA
GTAGGAGGCGCTCCTCCGCCTCCTCCGCCACCTCCTCCTCCTCCTCCTCG
TCCTCCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTCCTCATCCTTCTTATCGCCCTTCTCAACAATTCCAACACCCTCAT
TTACCCTACCCTGGCGCTGGTATGGTGGCCCCACGCCCTCCACACACGAT
GGGAATGGGAGTGTATGGGTCGTCCATGTTTCCTCATAATTTTCAGCCAC
ATATGGTAGGACCACCGTCCATGCCACCGCCTCATTTTGGAACTGGGCAC
CCTATGCAGATGGCACAATCCATTGAGATGGGTTCAGTTGCAATGATTAA
TGCAGGTTTCAATAATAATCATGTCAACAGCAGTCGGTATCCTGGTCCAC
CCCCTCCTCCACTTCCTCATCACCCCCCCTGGCTCCTTCTCCTCCTTCTG
CTCCAAGTGTGGTTTCCAATGGTGGTGGAGGAGGAGGCGCTGGCGAAGGA
AATATGAGCGCCGGCACGAAGAACAGCCCGCTTGGAGATGACCAGCAACT
CCGCTCCTTCTCCTCGTCCTCCTCCTCTTCTTATACCCCCACCTTTCCCT
CTGGCGACACACCTGCTTCCGCTGCTAGGGGACACACCGTTGGAAGCCGG
GGAGTGCATAGAGAGGCGATGGGGAACAGTAACAGCAGCAGCAGTATTGA
TGCCAATTTTAATGAAGCGATCGCTCCTTCTTCCATCACCGACCCTGTTC
TGCGCCAGCAGGTTCAACGACATCTCCAGCTGCAGTACCAGAAGCAACAA
CAGCGGGAGCGGCAGCATGGGGGATTGTGCGAGCAGAAACAGCACATAGT
TAGCGGCAGCGATGGCGATAATGGTGCCTGGCCCTCGATGTCTAATCAGT
GGCCCGACCGAGATATGCGCGAAAGAGGACCACCGATCTCCAGCGGTTCG
TCATCCTTCAGAGGGGAGACTTTATTCGAAGGGCCTGGGGCTGGTGTTAG
TACTCGTACTAATGGTGCTGCAGGCTCAATAGGCGCTCCCCTTTGTCTCT
CTTCCAATCAGCCAATATACCCGCCCTTTGGATCCTCAGGTGGGGGAGGG
GAAGTAGTAGGAGGAGGAGAAATAGGAAGGGGGCCTTCAGTCACGAGCAC
CACTAGGGGAACCGGGAACAACAATAATAACAAGGGCGGTATCACCAGCA
TCAGTAGCGGGAGCAGCAGCGACGAGTGTGGAGGGGATGGGAGAGGAAGT
GATGACGGAAGTGTTTGCATTATCCGGAGTGGCGACGGGGCGGTCTCGAT
GGCTAATGCGAGGAAGGGACGGATGGAGGGAAACACGAACGAGCATGTAA
GCAGCAACAGCATCAGCAGCAGCAACGATGGCGACATCAAGGCGACCAGC
CACGGTTTCAACACCACGAGAATGATAAACCACGACGCTGAGCCAGTCGC
TGCTGCTGCTGCTGCTGGTGCTGCAAACGTTACAGCGACAGAAGCATTAA
ACACGGTGAATGGAGCTGCAGCAGTGATGGAGGCCGTGTCCCCAAGCAGC
ACACCTTTGCAAATGAAGGGCCATTTGATTAGCATACTTTCGGGGGGGGA
CGTCGCCGTGGAGCGGACGCGGCACCTGCTCACCTCCTGGCATTTGTGGA
GTTTGGAAGGGGGAGGGCTTAGCAACAGCAGCAGCAGTAGCAGCAGTGTC
AGTAGCACTAGCAAATGTGGCCCTGTGGGGGAGTCTACTGTGAAAGCAGA
ACCTGGACAGGCGAAGGAGGATTTGAGGGAACTGGCAAATTTGATTCAAT
TAACATTGCCTCCGTCAGTGGCTGCGTGGGCGAAGAGCCGTGGGGCCATG
GGTGGCACGGTGGCGGCGACTGAGGAACAGGAGCAGGTACAGAGTTTTTT
GGATATGTGTGTGGATGATGATGGATCAGCGATTTGTAGTGCTGTTTACA
GTGGGGGGAGGTTGCAGCTGACTTTGAATTCGAGGTTTGCTGCTATGTAT
ATGACGCTGGAAGAGTTGGAGACGACAGTGGCGAGGGATAGGTTGAGACC
AGAGTTGGTGTGGCGGCAGTTGTTGAGTCCTGAATGTTTCTCGGCATATG
ATGAGGCGCTATGTCAGGCGTATTTTAAGGGGCAGAACTTGGGGGGAGAG
GCATGTGAGATTATAAAGTGCGTGGATAGGTTTGGGCTTGAAATGCCGTG
TTTCATGCGACTGCGCATCTTTGCGTCGTCACAAGGGACCATTACGGCTT
CGGTTATATTCTTGTTGCCGTTGCAGTTATCCCAGTTAGTGGAGGCCTCG
TGAAGTGGCGGAGACCAGAGCGGGGGGGGTGAAGCATATGAGTTATTGAC
TGGAAAGTAAAAGAGAGCAGAGTGGGAGGAACAAAAGGCAAGACACATGA
TCTACTTAAAAATGTTCTAAGAGTGTGGCTGGAAAGGATAAGGGAAGAGC
CAGGGGAGTGTCACACCAAATATATAAAGTGCCCCCTCCCCCCCCCGCCG
CACCCTCCAAAAGCAGTTTCCGCGACAAAAACATGTCAGGAGTGGATAAA
AAGGAGGTGAGGATCGATCGATCCAGTGCATAAATACATTAACAAAGAGG
TAGTCAGCTGAAT back to topprotein sequence of NO01G02940.1 >NO01G02940.1-protein ID=NO01G02940.1-protein|Name=NO01G02940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=600bp
MSAGTKNSPLGDDQQLRSFSSSSSSSYTPTFPSGDTPASAARGHTVGSRG
VHREAMGNSNSSSSIDANFNEAIAPSSITDPVLRQQVQRHLQLQYQKQQQ
RERQHGGLCEQKQHIVSGSDGDNGAWPSMSNQWPDRDMRERGPPISSGSS
SFRGETLFEGPGAGVSTRTNGAAGSIGAPLCLSSNQPIYPPFGSSGGGGE
VVGGGEIGRGPSVTSTTRGTGNNNNNKGGITSISSGSSSDECGGDGRGSD
DGSVCIIRSGDGAVSMANARKGRMEGNTNEHVSSNSISSSNDGDIKATSH
GFNTTRMINHDAEPVAAAAAAGAANVTATEALNTVNGAAAVMEAVSPSST
PLQMKGHLISILSGGDVAVERTRHLLTSWHLWSLEGGGLSNSSSSSSSVS
STSKCGPVGESTVKAEPGQAKEDLRELANLIQLTLPPSVAAWAKSRGAMG
GTVAATEEQEQVQSFLDMCVDDDGSAICSAVYSGGRLQLTLNSRFAAMYM
TLEELETTVARDRLRPELVWRQLLSPECFSAYDEALCQAYFKGQNLGGEA
CEIIKCVDRFGLEMPCFMRLRIFASSQGTITASVIFLLPLQLSQLVEAS* back to top
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