NO01G02190, NO01G02190 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G02190
Unique Name	NO01G02190
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1783
Alignment location	chr1:556394..558176 +

Link to JBrowse

Properties


Property Name	Value
Description	Serine hydroxymethyltransferase

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:556394..558176 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016054	2021-01-14
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PXD008721	2019-04-30
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR015424	PyrdxlP-dep_Trfase

Vocabulary: **Molecular Function**
Term	Definition
GO:0016740	transferase activity
GO:0005488	binding

Vocabulary: **Biological Process**
Term	Definition
GO:0009987	cellular process
GO:0009058	biosynthetic process

Homology

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BLAST of NO01G02190 vs. NCBI_GenBank
Match: XP_008613015.1 (serine hydroxymethyltransferase 2 [Saprolegnia diclina VS20] >EQC33375.1 serine hydroxymethyltransferase 2 [Saprolegnia diclina VS20])

HSP 1 Score: 688.0 bits (1774), Expect = 2.000e-194
Identity = 331/451 (73.39%), Postives = 381/451 (84.48%), Query Frame = 0

Query:    1 MSLAQNKPLKEHDPVLYELIQKEKNRQLTSLELIASENFTSGAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMETNAALFKPAMIISGGSAYPREWDYARIRSIADANGSLMMVDMAHISGLVATQEAADPFEFADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMSPEFKEYAIQVKKNAQAIAKALTAKGYKMATGGTVNHLVLWDLRPQALTGSKMERLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEKVADFLDQAVKIGLRIQAASGPKLVDFTQALGEDEEVKSLKLQVNEFAKGFPMPG 452
            MS + N  L++HDP ++ LI+ EKNRQ   LELIASENFTS AVM+CLGS LTNKYAEG+P ARYYGGNEV+D++E LC+ RAL+AY L+PE+WGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTY+KAE TRKAVSATS+YFESLPYRVHP+TGL+D++++   AALFKPAMI+ GGSAYPR+WDYA  R IAD NG+L+M DMAH SGLVATQE A PF+  DVVTTTTHKSLRGPRAG+IFFRKD R FE +INQAVFPALQGGPHEHQIA +ATQLKEVM+PEFK YA QVK N +AIA AL   GY ++TGGT NHL+LWDLRP  +TGSKME+LCD + ITLNKN+V+GDRSA+TPGGVR+G PALTSRGFKEADF  VA FL +AVK+ L IQA +G K+VDF +AL     VK+L+  VN FA  F MPG
Sbjct:    1 MSASGNISLEQHDPEMFNLIEAEKNRQWKCLELIASENFTSRAVMDCLGSCLTNKYAEGIPSARYYGGNEVIDKIETLCQTRALKAYGLNPEEWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYSKAENTRKAVSATSVYFESLPYRVHPETGLVDFEKLAETAALFKPAMIVCGGSAYPRDWDYASFRKIADDNGALLMCDMAHYSGLVATQEHASPFDLCDVVTTTTHKSLRGPRAGMIFFRKDARGFENKINQAVFPALQGGPHEHQIAAIATQLKEVMTPEFKAYAKQVKANCRAIAAALVEYGYVLSTGGTDNHLLLWDLRPVGITGSKMEKLCDEVCITLNKNSVLGDRSAVTPGGVRVGTPALTSRGFKEADFVTVAGFLHRAVKLCLEIQATTGKKIVDFNKALESHAGVKALRSDVNAFATKFNMPG 451

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BLAST of NO01G02190 vs. NCBI_GenBank
Match: XP_009832949.1 (hypothetical protein H257_08661 [Aphanomyces astaci] >ETV77839.1 hypothetical protein H257_08661 [Aphanomyces astaci])

HSP 1 Score: 687.6 bits (1773), Expect = 2.700e-194
Identity = 328/448 (73.21%), Postives = 378/448 (84.38%), Query Frame = 0

Query:    4 AQNKPLKEHDPVLYELIQKEKNRQLTSLELIASENFTSGAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMETNAALFKPAMIISGGSAYPREWDYARIRSIADANGSLMMVDMAHISGLVATQEAADPFEFADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMSPEFKEYAIQVKKNAQAIAKALTAKGYKMATGGTVNHLVLWDLRPQALTGSKMERLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEKVADFLDQAVKIGLRIQAASGPKLVDFTQALGEDEEVKSLKLQVNEFAKGFPMPG 452
            A N PL+ HDP L+ LI+ EKNRQ   LELIASENFTS AVM+CLGS LTNKYAEG    RYYGGNEV+DQ+E LC+DRALQAY L+P +WGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTY+KAE TRKAVSATS+YFESLPYRVHP+TGLID+D++  +A+LFKPA+I+ GGSAYPR+WDY+  R IAD NGSL+M DMAH SGLVAT+E  DPFEF D+VTTTTHKSLRGPRAG+IF+RKD RNFE +INQAVFP LQGGPHEHQIA +ATQLKEV +PEFK+YAIQVK N +A+AKALT KGY +ATGGT NHL+LWDLRP  +TG+KME+LCDV +ITLNKN+V+GDRSA++PGGVR+G PALTSRG  E+DF  VA+FL +AV++ L IQ  SG K+ DF  AL     VK L+  VN FA  F MPG
Sbjct:    5 AGNTPLEHHDPELFNLIEHEKNRQWKCLELIASENFTSRAVMDCLGSCLTNKYAEGYVNQRYYGGNEVIDQIEQLCQDRALQAYGLNPAEWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYSKAENTRKAVSATSVYFESLPYRVHPETGLIDFDKLAESASLFKPALIVCGGSAYPRDWDYSAFRKIADDNGSLLMCDMAHYSGLVATKEHNDPFEFCDIVTTTTHKSLRGPRAGMIFYRKDARNFEVKINQAVFPGLQGGPHEHQIAAIATQLKEVQTPEFKQYAIQVKANCRALAKALTDKGYVLATGGTDNHLLLWDLRPAGITGAKMEKLCDVASITLNKNSVLGDRSAISPGGVRVGTPALTSRGLTESDFVHVAEFLHRAVQLALEIQVTSGKKISDFNAALASHAGVKQLRDDVNTFATQFNMPG 452

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BLAST of NO01G02190 vs. NCBI_GenBank
Match: XP_002898577.1 (serine hydroxymethyltransferase 1, mitochondrial precursor [Phytophthora infestans T30-4] >EEY63054.1 serine hydroxymethyltransferase 1, mitochondrial precursor [Phytophthora infestans T30-4])

HSP 1 Score: 686.8 bits (1771), Expect = 4.500e-194
Identity = 329/451 (72.95%), Postives = 379/451 (84.04%), Query Frame = 0

Query:    1 MSLAQNKPLKEHDPVLYELIQKEKNRQLTSLELIASENFTSGAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMETNAALFKPAMIISGGSAYPREWDYARIRSIADANGSLMMVDMAHISGLVATQEAADPFEFADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMSPEFKEYAIQVKKNAQAIAKALTAKGYKMATGGTVNHLVLWDLRPQALTGSKMERLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEKVADFLDQAVKIGLRIQAASGPKLVDFTQALGEDEEVKSLKLQVNEFAKGFPMPG 452
            M +A N  L+E DP ++ LI+ EKNRQ   LELIASENFTS AVM+CLGS LTNKYAEGLP ARYYGGNEV+D++E LC+ RAL AY LD EKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTY+KAE TRKAVSATS+YFESLPYRV  DTGLID++++   AALFKPAMI+ GGSAYPR+WDYA  R IAD NG+L+M DMAH SGLVATQE A PF++ D+VTTTTHKSLRGPRAG+IFFR+D+R FE RIN AVFPALQGGPHEHQIAG+A QLKEV +PEFK Y  Q+K NA+ ++K LT  GY M TGGT NHL+LWDLRPQ++TGSK+E+LCD++ ITLNKNAV+GDRSALTPGGVR+G PALTSRGFKEA+F KVA+FLD+AVK+ + IQ+ SG KLVDF + +   E VK L+  VN  A  F MPG
Sbjct:   39 MVIANNATLEEQDPEIFNLIEAEKNRQWKCLELIASENFTSRAVMDCLGSCLTNKYAEGLPNARYYGGNEVIDKIEILCQQRALTAYGLDAEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYSKAEKTRKAVSATSVYFESLPYRVSADTGLIDFEKLAEQAALFKPAMIVCGGSAYPRDWDYAAFRKIADDNGALLMCDMAHYSGLVATQEHASPFDYCDIVTTTTHKSLRGPRAGMIFFRRDERGFEPRINNAVFPALQGGPHEHQIAGIAAQLKEVQTPEFKTYVQQLKANAKVLSKTLTDLGYSMCTGGTDNHLILWDLRPQSVTGSKLEKLCDMVCITLNKNAVLGDRSALTPGGVRVGTPALTSRGFKEAEFVKVAEFLDRAVKLCVEIQSTSGKKLVDFVKGVEAHEGVKQLRRDVNALATSFEMPG 489

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BLAST of NO01G02190 vs. NCBI_GenBank
Match: CCA16615.1 (unnamed protein product [Albugo laibachii Nc14])

HSP 1 Score: 685.6 bits (1768), Expect = 1.000e-193
Identity = 333/451 (73.84%), Postives = 380/451 (84.26%), Query Frame = 0

Query:    1 MSLAQNKPLKEHDPVLYELIQKEKNRQLTSLELIASENFTSGAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMETNAALFKPAMIISGGSAYPREWDYARIRSIADANGSLMMVDMAHISGLVATQEAADPFEFADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMSPEFKEYAIQVKKNAQAIAKALTAKGYKMATGGTVNHLVLWDLRPQALTGSKMERLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEKVADFLDQAVKIGLRIQAASGPKLVDFTQALGEDEEVKSLKLQVNEFAKGFPMPG 452
            M L  N PL++HD  L++LI++EKNRQ   LELIASENFTS AVMECLGS LTNKYAEG+P  RYYGGNEV+D++E LC++RAL+AY LDP+KWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTY+KAE TRKAVSATS+YFESLPYRV  +TGLID+  +   AALFKPAMII GGSAYPR+WDY R RSIAD NGSL+M DMAH SGLVA  E   PFEF DVVTTTTHKSLRGPRAG+IF+RKD+R FE RIN AVFPALQGGPHEHQIAGVATQLKEVM+PEFK+YA QV KNA+ +A+ LT++GY M TGGT NHLVLWDLRP  +TGSK+E+LCD++ ITLNKNAV+GDRSAL+PGGVR+G PALTSRGF E DF +VA+FLD+AVK+ + IQ  SG KLVDF +A  + E V  L+  VN  A  F MPG
Sbjct:    1 MPLPGNVPLEQHDNELFKLIEEEKNRQWKCLELIASENFTSQAVMECLGSCLTNKYAEGVPHQRYYGGNEVIDKIEILCQERALKAYGLDPQKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYSKAEKTRKAVSATSVYFESLPYRVSSETGLIDFAALAEQAALFKPAMIICGGSAYPRDWDYDRFRSIADENGSLLMCDMAHYSGLVAAGEHRSPFEFCDVVTTTTHKSLRGPRAGMIFYRKDEREFESRINNAVFPALQGGPHEHQIAGVATQLKEVMTPEFKKYAQQVIKNAKVVAETLTSQGYSMCTGGTENHLVLWDLRPVGITGSKLEKLCDLVCITLNKNAVLGDRSALSPGGVRVGTPALTSRGFVEKDFVQVAEFLDRAVKLCIEIQETSGKKLVDFLKAAEKHEGVSQLRKDVNALATSFEMPG 451

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BLAST of NO01G02190 vs. NCBI_GenBank
Match: GAX14802.1 (glycine hydroxymethyltransferase [Fistulifera solaris])

HSP 1 Score: 685.6 bits (1768), Expect = 1.000e-193
Identity = 332/445 (74.61%), Postives = 381/445 (85.62%), Query Frame = 0

Query:    7 KPLKEHDPVLYELIQKEKNRQLTSLELIASENFTSGAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMETNAALFKPAMIISGGSAYPREWDYARIRSIADANGSLMMVDMAHISGLVATQEAADPFEFADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMSPEFKEYAIQVKKNAQAIAKALTAKGYKMATGGTVNHLVLWDLRPQALTGSKMERLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEKVADFLDQAVKIGLRIQAASGPKLVDFTQALGEDEEVKSLKLQVNEFAKGFPMPG 452
            K L+EHDP L++LI++EK+RQ  SLELIASENFTS AVM+CLGS LTNKY+EGLP ARYYGGNEVVDQVE LC+ RAL+AY LDP +WGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTY+K E TRKAVSATS+YFESLPYRVHP+TG IDYDQ+E +A LFKPA+II+GGSAYPRE+DY R R IADANG L+M+DMAHISGLVAT EAA PF++ DVVTTTTHKSLRGPRAGLIFFR+D R+FE RINQAVFPALQGGPHEHQIAGVATQLKEV + +FK YA QVK NA AIA  L++ GYK+ATGGT NHL+LWDL+P  +TGSK E++CD ++ITLNKN V GD SA+TPGGVRIG PALT+R F EADFE+VA FL + ++I L++Q  SGPKL DF   L    E+K L+ +V+ FA  FPMPG
Sbjct:   13 KSLEEHDPELFDLIEQEKSRQWRSLELIASENFTSKAVMDCLGSALTNKYSEGLPHARYYGGNEVVDQVEILCQTRALEAYGLDPTEWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYSKKENTRKAVSATSVYFESLPYRVHPETGYIDYDQLERDAGLFKPALIIAGGSAYPREYDYPRFRQIADANGCLLMMDMAHISGLVATGEAASPFKYCDVVTTTTHKSLRGPRAGLIFFRRDSRDFETRINQAVFPALQGGPHEHQIAGVATQLKEVATDDFKLYAKQVKANAVAIANKLSSMGYKIATGGTENHLILWDLKPCNITGSKFEKVCDAVSITLNKNCVPGDHSAITPGGVRIGTPALTTRRFGEADFEQVAMFLHETLQIALKLQDQSGPKLKDFLPLLESSPEIKELRKRVHSFATTFPMPG 457

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BLAST of NO01G02190 vs. NCBI_GenBank
Match: ETO81904.1 (hypothetical protein F444_03870 [Phytophthora parasitica P1976])

HSP 1 Score: 684.9 bits (1766), Expect = 1.700e-193
Identity = 329/451 (72.95%), Postives = 377/451 (83.59%), Query Frame = 0

Query:    1 MSLAQNKPLKEHDPVLYELIQKEKNRQLTSLELIASENFTSGAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMETNAALFKPAMIISGGSAYPREWDYARIRSIADANGSLMMVDMAHISGLVATQEAADPFEFADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMSPEFKEYAIQVKKNAQAIAKALTAKGYKMATGGTVNHLVLWDLRPQALTGSKMERLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEKVADFLDQAVKIGLRIQAASGPKLVDFTQALGEDEEVKSLKLQVNEFAKGFPMPG 452
            M +A N  L+E DP ++ LI+ EKNRQ   LELIASENFTS AVM+CLGS LTNKYAEGLP ARYYGGNEV+D++E LC+ RAL AY LD EKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTY+KAE TRKAVSATS+YFESLPYRV+ DTGLID++++   AALFKPAMI+ GGSAYPR+WDYA  R IAD NG+L+M DMAH SGLVAT+E A PF++ D+VTTTTHKSLRGPRAG+IFFR+D+R FE RIN AVFPALQGGPHEHQIAG+A QLKEV +PEFK Y  Q+K NA+ +AK LT  GY M TGGT NHL+LWDLRPQ +TGSK+E+LCD++ ITLNKNAV+GDRSALTPGGVR+G PALTSRGFKEA+F KVA+FLD+AVK+ + IQ  SG KLVDF +     E VK L+  VN  A  F MPG
Sbjct:    1 MVIANNATLEEQDPEIFNLIEAEKNRQWKCLELIASENFTSRAVMDCLGSCLTNKYAEGLPNARYYGGNEVIDKIEILCQQRALTAYGLDAEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYSKAEKTRKAVSATSVYFESLPYRVNADTGLIDFEKLAEQAALFKPAMIVCGGSAYPRDWDYAAFRKIADDNGALLMCDMAHYSGLVATKEHASPFDYCDIVTTTTHKSLRGPRAGMIFFRRDERGFEPRINNAVFPALQGGPHEHQIAGIAAQLKEVQTPEFKAYVQQLKANAKVLAKTLTDLGYSMCTGGTDNHLILWDLRPQGVTGSKLEKLCDMVCITLNKNAVLGDRSALTPGGVRVGTPALTSRGFKEAEFVKVAEFLDRAVKLCVEIQNTSGKKLVDFVKGAEAHEGVKQLRRDVNALATSFEMPG 451

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BLAST of NO01G02190 vs. NCBI_GenBank
Match: XP_024586644.1 (serine hydroxymethyltransferase [Plasmopara halstedii] >CEG50275.1 serine hydroxymethyltransferase [Plasmopara halstedii])

HSP 1 Score: 684.9 bits (1766), Expect = 1.700e-193
Identity = 327/451 (72.51%), Postives = 380/451 (84.26%), Query Frame = 0

Query:    1 MSLAQNKPLKEHDPVLYELIQKEKNRQLTSLELIASENFTSGAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMETNAALFKPAMIISGGSAYPREWDYARIRSIADANGSLMMVDMAHISGLVATQEAADPFEFADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMSPEFKEYAIQVKKNAQAIAKALTAKGYKMATGGTVNHLVLWDLRPQALTGSKMERLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEKVADFLDQAVKIGLRIQAASGPKLVDFTQALGEDEEVKSLKLQVNEFAKGFPMPG 452
            M +A N  L+E DP ++ LI+ EKNRQ   LELIASENFTS AVM+CLGS LTNKYAEGLP ARYYGGNEV+D++E LC+ RAL AY LD EKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTY+KAE TRKAVSATS+YFESLPYRV+ DTGLID++++   AALFKPAMII GGSAYPR+WDYA  R IAD NG+L+M DMAH SGLV T+E A PF++ D+VTTTTHKSLRGPRAG+IFFR+D+R FE RIN AVFPALQGGPHEHQIAG+A QLKEV +P+FK+Y  Q+K NA+ +AK LT  GY M TGGT NHL+LWDLRPQ +TGSK+E+LCD++ ITLNKNAV+GDRSALTPGGVR+G PALTSRGFKEA+F K+A+FLD+AVK+ + IQ++SG KLVDF ++    E VK L+  VN  A  F MPG
Sbjct:    1 MVIANNATLEEQDPEIFNLIEAEKNRQWKCLELIASENFTSRAVMDCLGSCLTNKYAEGLPNARYYGGNEVIDKIEILCQQRALTAYDLDAEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYSKAENTRKAVSATSVYFESLPYRVNADTGLIDFEKLAELAALFKPAMIICGGSAYPRDWDYAAFRKIADDNGALLMCDMAHYSGLVVTKEHASPFDYCDIVTTTTHKSLRGPRAGMIFFRRDERKFEARINNAVFPALQGGPHEHQIAGIAAQLKEVQTPDFKKYVQQLKANAKILAKTLTDFGYSMCTGGTDNHLILWDLRPQGVTGSKLEKLCDMVCITLNKNAVLGDRSALTPGGVRVGTPALTSRGFKEAEFVKIAEFLDRAVKLCIEIQSSSGKKLVDFVKSAEAHEGVKQLRRDVNALATSFEMPG 451

[Close]

BLAST of NO01G02190 vs. NCBI_GenBank
Match: OQR83827.1 (serine hydroxymethyltransferase 1, mitochondrial precursor [Achlya hypogyna])

HSP 1 Score: 684.9 bits (1766), Expect = 1.700e-193
Identity = 329/451 (72.95%), Postives = 380/451 (84.26%), Query Frame = 0

Query:    1 MSLAQNKPLKEHDPVLYELIQKEKNRQLTSLELIASENFTSGAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMETNAALFKPAMIISGGSAYPREWDYARIRSIADANGSLMMVDMAHISGLVATQEAADPFEFADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMSPEFKEYAIQVKKNAQAIAKALTAKGYKMATGGTVNHLVLWDLRPQALTGSKMERLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEKVADFLDQAVKIGLRIQAASGPKLVDFTQALGEDEEVKSLKLQVNEFAKGFPMPG 452
            MS + N  L++HDP ++ LI+ EKNRQ   LELIASENFTS AVM+CLGS LTNKYAEG+P ARYYGGNEV+D++E LC+ RAL+AY L+PE+WGVNVQPYSGSPANFAVYT LLRPHDRIMGLDLPSGGHLTHGFYTY+KAE TRKAVSATS+YFESLPYRVHP+TGLID+D++  +AALFKPA+I+ GGSAYPR+WDYA  R IAD NG+L+M DMAH SGLVA  E A PFEF DVVTTTTHKSLRGPRAG+IFFRKD R FE +INQAVFPALQGGPHEHQIA +ATQLKEVM+PEFK YA QVK N +AIA AL   GY ++TGGT NHL+LWDLRP  +TGSKME+LCD + ITLNKN+V+GDRSA+TPGGVRIG PALTSRGFKEADF  VA FL +AV++ + IQ  +G K+ DF +AL  + +VK+LK  VN FA  F MPG
Sbjct:    1 MSASGNISLEQHDPEMFNLIENEKNRQWKCLELIASENFTSRAVMDCLGSCLTNKYAEGIPNARYYGGNEVIDKIETLCQTRALKAYGLNPEEWGVNVQPYSGSPANFAVYTGLLRPHDRIMGLDLPSGGHLTHGFYTYSKAENTRKAVSATSVYFESLPYRVHPETGLIDFDKLAESAALFKPALIVCGGSAYPRDWDYASFRKIADDNGALLMCDMAHYSGLVAAGEHASPFEFCDVVTTTTHKSLRGPRAGMIFFRKDARGFENKINQAVFPALQGGPHEHQIAAIATQLKEVMTPEFKAYAKQVKANCRAIAAALVEYGYVLSTGGTDNHLLLWDLRPAGITGSKMEKLCDEVCITLNKNSVLGDRSAVTPGGVRIGTPALTSRGFKEADFITVAGFLHRAVQLCVEIQKTTGKKIADFNKALESNADVKALKADVNAFATKFNMPG 451

[Close]

BLAST of NO01G02190 vs. NCBI_GenBank
Match: OWZ17428.1 (Serine hydroxymethyltransferase 1 [Phytophthora megakarya])

HSP 1 Score: 684.9 bits (1766), Expect = 1.700e-193
Identity = 328/451 (72.73%), Postives = 376/451 (83.37%), Query Frame = 0

Query:    1 MSLAQNKPLKEHDPVLYELIQKEKNRQLTSLELIASENFTSGAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMETNAALFKPAMIISGGSAYPREWDYARIRSIADANGSLMMVDMAHISGLVATQEAADPFEFADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMSPEFKEYAIQVKKNAQAIAKALTAKGYKMATGGTVNHLVLWDLRPQALTGSKMERLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEKVADFLDQAVKIGLRIQAASGPKLVDFTQALGEDEEVKSLKLQVNEFAKGFPMPG 452
            M +A N  L+E DP ++ LI+ EKNRQ   LELIASENFTS AVM+CLGS LTNKYAEGLP ARYYGGNEV+D++E LC+ RAL AY LD +KWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTY+KAE TRKAVSATS+YFESLPYRV+ DTGLID++++   AALFKPAMI+ GGSAYPR+WDYA  R IAD NG+L+M DMAH SGLV T+E A PFE+ D+VTTTTHKSLRGPRAG+IFFR+D R FE +IN AVFPALQGGPHEHQIAG+A QLKE  +PEFK Y  Q+K NA+ +AK LT  GY M TGGT NHL+LWDLRPQ +TGSK+E+LCD++ ITLNKNAV+GDRSALTPGGVR+G PALTSRGFKEA+F KVA+FLD+AVK+ + IQA SG KLVDF +A    E VK L+  VN  A  F MPG
Sbjct:    1 MVIANNATLEEQDPEIFNLIEAEKNRQWKCLELIASENFTSRAVMDCLGSCLTNKYAEGLPNARYYGGNEVIDKIEILCQQRALTAYGLDEDKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYSKAENTRKAVSATSVYFESLPYRVNADTGLIDFEKLAEQAALFKPAMIVCGGSAYPRDWDYAAFRKIADDNGALLMCDMAHYSGLVVTKEHASPFEYCDIVTTTTHKSLRGPRAGMIFFRRDSRGFEPKINNAVFPALQGGPHEHQIAGIAAQLKEAQTPEFKTYVQQLKANAKVLAKTLTDLGYSMCTGGTDNHLILWDLRPQGVTGSKLEKLCDMVCITLNKNAVLGDRSALTPGGVRVGTPALTSRGFKEAEFVKVAEFLDRAVKLCIEIQATSGKKLVDFVKAADVHEGVKQLRRDVNALATSFEMPG 451

[Close]

BLAST of NO01G02190 vs. NCBI_GenBank
Match: ETI53207.1 (hypothetical protein F443_03790 [Phytophthora parasitica P1569] >ETK93066.1 hypothetical protein L915_03683 [Phytophthora parasitica] >ETL46490.1 hypothetical protein L916_03618 [Phytophthora parasitica] >ETL99614.1 hypothetical protein L917_03542 [Phytophthora parasitica] >ETM52780.1 hypothetical protein L914_03645 [Phytophthora parasitica] >ETP23027.1 hypothetical protein F441_03772 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 684.5 bits (1765), Expect = 2.300e-193
Identity = 329/451 (72.95%), Postives = 377/451 (83.59%), Query Frame = 0

Query:    1 MSLAQNKPLKEHDPVLYELIQKEKNRQLTSLELIASENFTSGAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMETNAALFKPAMIISGGSAYPREWDYARIRSIADANGSLMMVDMAHISGLVATQEAADPFEFADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMSPEFKEYAIQVKKNAQAIAKALTAKGYKMATGGTVNHLVLWDLRPQALTGSKMERLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEKVADFLDQAVKIGLRIQAASGPKLVDFTQALGEDEEVKSLKLQVNEFAKGFPMPG 452
            M +A N  L+E DP ++ LI+ EKNRQ   LELIASENFTS AVM+CLGS LTNKYAEGLP ARYYGGNEV+D++E LC+ RAL AY LD EKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTY+KAE TRKAVSATS+YFESLPYRV+ DTGLID++++   AALFKPAMI+ GGSAYPR+WDYA  R IAD NG+L+M DMAH SGLVAT+E A PF++ D+VTTTTHKSLRGPRAG+IFFR+D+R FE RIN AVFPALQGGPHEHQIAG+A QLKEV +PEFK Y  Q+K NA+ +AK LT  GY M TGGT NHL+LWDLRPQ +TGSK+E+LCD++ ITLNKNAV+GDRSALTPGGVR+G PALTSRGFKEA+F KVA+FLD+AVK+ + IQ  SG KLVDF +     E VK L+  VN  A  F MPG
Sbjct:    1 MVIANNATLEEQDPEIFNLIEAEKNRQWKCLELIASENFTSRAVMDCLGSCLTNKYAEGLPNARYYGGNEVIDKIEILCQQRALTAYGLDAEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYSKAEKTRKAVSATSVYFESLPYRVNADTGLIDFEKLAEQAALFKPAMIVCGGSAYPRDWDYAAFRKIADDNGALLMCDMAHYSGLVATKEHASPFDYCDIVTTTTHKSLRGPRAGMIFFRRDERGFEPRINNAVFPALQGGPHEHQIAGIAAQLKEVQTPEFKAYVQQLKANAKVLAKTLTDLGYSMCTGGTDNHLILWDLRPQGVTGSKLEKLCDMVCITLNKNAVLGDRSALTPGGVRVGTPALTSRGFKEAEFVKVAEFLDRAVKLCVEIQNTSGKKLVDFVKGAEVHEGVKQLRRDVNALATSFEMPG 451

The following BLAST results are available for this feature:

BLAST of NO01G02190 vs. NCBI_GenBank

BLAST of NO01G02190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_008613015.1	2.000e-194	73.39	serine hydroxymethyltransferase 2 [Saprolegnia dic...	[more]
XP_009832949.1	2.700e-194	73.21	hypothetical protein H257_08661 [Aphanomyces astac...	[more]
XP_002898577.1	4.500e-194	72.95	serine hydroxymethyltransferase 1, mitochondrial p...	[more]
CCA16615.1	1.000e-193	73.84	unnamed protein product [Albugo laibachii Nc14]	[more]
GAX14802.1	1.000e-193	74.61	glycine hydroxymethyltransferase [Fistulifera sola...	[more]
ETO81904.1	1.700e-193	72.95	hypothetical protein F444_03870 [Phytophthora para...	[more]
XP_024586644.1	1.700e-193	72.51	serine hydroxymethyltransferase [Plasmopara halste...	[more]
OQR83827.1	1.700e-193	72.95	serine hydroxymethyltransferase 1, mitochondrial p...	[more]
OWZ17428.1	1.700e-193	72.73	Serine hydroxymethyltransferase 1 [Phytophthora me...	[more]
ETI53207.1	2.300e-193	72.95	hypothetical protein F443_03790 [Phytophthora para...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL006	nonsL006	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR047	ncniR047	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR091	ngnoR091	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK008117	NSK008117	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO01G02190.1	NO01G02190.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576554	gene_204	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
SHMT2	gene1472	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO01G02190.1	NO01G02190.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO01G02190 ID=NO01G02190|Name=NO01G02190|organism=Nannochloropsis oceanica|type=gene|length=1783bp
ATGTCTCTGGCTCAGAACAAACCGCTGAAGGAACACGACCCCGTGCTCTA
TGAGCTAATTCAAAAGgtaaggaagggagtaagtgaaggaggagagggta
tgtggccccaggtcgcgtgtgatgagtgcttggagcttcttacggcagct
tggttggctgcacagtcgcttcgccctttggaagacagcatgtgggtctg
tgtctgcatgtgcttgactcatgaagtatttatcttccctccgtggtgat
gaacagcgtaactcattctatcccttcccttttttctctccttgcccgca
cacagGAGAAGAACCGCCAGCTCACCTCCTTAGAGCTGATTGCCTCGGAA
AACTTCACTTCCGGTGCCGTTATGGAATGCTTGGGCTCCGTACTAACAAA
TAAGgtgagaaggagggatatagtgagagactattctgtggtatgtcgtc
cagctgcttgacacggtgttcctcttaatttgccgccacatcaactaaat
gcggtccctgtctcccgacgcctcaccgcttcacgatctttctttaattt
aatccctctcacccttccttccatcctttcctgtagTATGCCGAAGGTCT
TCCCGGCGCCCGCTACTACGGCGGCAATGAAGTGGTGGACCAAGTCGAGA
ACTTGTGCCGCGACCGGGCCCTGCAGGCTTACCGGTTGGATCCGGAGAAG
TGGGGCGTGAACGTCCAGCCCTATTCCGGCAGCCCGGCCAACTTTGCGGT
ATACACGGCGTTGCTTCGCCCGCACGACCGTATCATGGGCTTGGACTTGC
CCAGTGGAGGGCACTTGACCCACGGTTTCTACACCTACAACAAGGCGGAG
GGTACCCGTAAGGCTGTGTCCGCCACGAGCATCTACTTCGAGTCTCTCCC
TTACCGCGTGCACCCTGATACGGGCCTGATCGACTACGACCAGATGGAGA
CGAACGCCGCGCTGTTCAAGCCCGCTATGATAATTTCCGGTGGCTCGGCC
TACCCCCGTGAGTGGGACTATGCTCGTATCCGCTCTATTGCCGATGCCAA
CGGCTCACTCATGATGGTGGACATGGCGCATATCTCGGGCCTGGTCGCCA
CGCAAGAGGCGGCGGACCCCTTCGAGTTCGCAGACGTGGTCACCACAACC
ACTCACAAGTCCCTTCGTGGGCCCCGAGCTGGCCTCATCTTTTTCCGCAA
AGATGACCGTAACTTTGAAGGCCGCATCAATCAGGCTGTCTTCCCGGCTC
TGCAGGGCGGGCCTCACGAACACCAGATTGCTGGTGTTGCCACGCAACTG
AAGGAGGTCATGTCACCCGAGTTCAAGGAATACGCAATCCAGGTAAAGAA
GAACGCGCAGGCCATCGCCAAGGCTCTGACTGCTAAGGGTTACAAGATGG
CGACCGGCGGCACGGTCAATCACTTGGTGCTGTGGGATTTGCGTCCTCAG
GCTCTAACGGGGAGCAAGATGGAGAGGCTCTGCGATGTCCTCAACATCAC
CCTGAACAAGAACGCTGTCGTCGGCGACCGTAGCGCCTTGACTCCCGGCG
GGGTGCGCATCGGTGCACCGGCCTTGACAAGTCGTGGATTCAAGGAGGCG
GATTTCGAAAAGGTTGCTGACTTTTTGGACCAGGCGGTGAAGATCGGGTT
GAGGATCCAAGCTGCCTCTGGGCCGAAGCTGGTGGATTTCACCCAGGCTC
TAGGGGAGGATGAAGAGGTCAAGTCGTTGAAGTTGCAGGTGAATGAGTTT
GCCAAGGGCTTTCCCATGCCGGGATTGGTCTAA

protein sequence of NO01G02190.1

>NO01G02190.1-protein ID=NO01G02190.1-protein|Name=NO01G02190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp
MSLAQNKPLKEHDPVLYELIQKEKNRQLTSLELIASENFTSGAVMECLGS
VLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQP
YSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVS
ATSIYFESLPYRVHPDTGLIDYDQMETNAALFKPAMIISGGSAYPREWDY
ARIRSIADANGSLMMVDMAHISGLVATQEAADPFEFADVVTTTTHKSLRG
PRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMSPE
FKEYAIQVKKNAQAIAKALTAKGYKMATGGTVNHLVLWDLRPQALTGSKM
ERLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEKVAD
FLDQAVKIGLRIQAASGPKLVDFTQALGEDEEVKSLKLQVNEFAKGFPMP
GLV*

Synonyms

Publications