NO01G00840, NO01G00840 (gene) Nannochloropsis oceanica

Overview
NameNO01G00840
Unique NameNO01G00840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3375
Alignment locationchr1:212693..216067 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:212693..216067 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G00840 vs. NCBI_GenBank
Match: EWM29015.1 (hypothetical protein Naga_100443g1 [Nannochloropsis gaditana])

HSP 1 Score: 246.1 bits (627), Expect = 1.000e-61
Identity = 120/226 (53.10%), Postives = 169/226 (74.78%), Query Frame = 0 
Query:    3 YDKDFRDDVDVRFPDVVDFIRNHVGFEENIARRRTDLEKAFISEQPLGVTVQLQSGQRLSLQVSPLQTLSGLYESLPSVEADEAIVSLEFGNISEEKIDDSTWITQELPPSGSLGMVPPSIRSMTLPSLWDKVQDHEGGMGEGMVRESIRMKRQRGSRGEEQAMIDELDASLRDVNEEIAQLKRSLREGSARAIDDVEADIAYLQARSKDIRRQLRGLGKWWRYWW 229
            YD++FRDDV+  FP++VD +R+ VGF+E++ RRR +LEK FIS QP+GV VQL++G+RL+   SPL+ LSGLYE++   E +  IVSLEF +IS+E + D T  ++++PP  +L ++PP  R M +PSLWDK+QD  GG       +++R++R+   + E+Q +I +L+ASL D+ EEI QL+ S  EGSARAIDD+EADI YL  + +D+RRQLRGLGKWWRYWW
Sbjct:   99 YDREFRDDVEAHFPEIVDVVRHRVGFQEDLGRRRAELEKTFISTQPVGVQVQLRNGRRLTTVASPLRDLSGLYEAVAPREEEGPIVSLEFQDISQENVQD-TSPSRDVPPPPTLAVIPPETRGMNVPSLWDKIQDEVGG------GDTLRLRREGAGQNEKQILIQQLEASLEDLKEEIGQLQASKLEGSARAIDDIEADINYLAEQRRDVRRQLRGLGKWWRYWW 317
The following BLAST results are available for this feature:
BLAST of NO01G00840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29015.11.000e-6153.10hypothetical protein Naga_100443g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008298NSK008298Nannochloropsis salina (N. salina CCMP1776)gene


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576061gene_58Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100443g1gene1601Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00840.1NO01G00840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G00840.2NO01G00840.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G00840.3NO01G00840.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G00840.4NO01G00840.4Nannochloropsis oceanica (N. oceanica IMET1)mRNA


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00840.1NO01G00840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G00840.2NO01G00840.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G00840.3NO01G00840.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G00840.4NO01G00840.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00840 ID=NO01G00840|Name=NO01G00840|organism=Nannochloropsis oceanica|type=gene|length=3375bp
CCTTAACCAAAGTACTCGGCCACGCTAACTGTCTAGCGCCGACATTGCAA
TACCTTTGTCTTTATAGATTAGACGGTTGATTGCCAGCGGGCCTTACGAG
TTTGTACAAGGAAAGAGGCCAGAATTTGTCACCTGCGGGACTAGAGCTGT
CTTCAAATTTTCCAAGCAATAGCCAGATAGCCCATTTATCGTCCCTTACG
GTCGTTTCATTTGCGAATTTTACACGGTGGTAAGTAGTGCACCTGTGGGG
GCATGTCGGAGCTTGGATCCCATGTCTCGCTCCAATTCTTTGCCGCTCCG
ACGTAAAGCCATTCAGCATACAATTATGCCTGGAGAATTAGTATGGGGCC
TCTGGGACCGTGGTGGTGGTACTCATGGACTGTATGTCCCCCGCCTTTAC
CGACCATACCCGAGGCCGTCATGAGAGGCGTCGCAGCTTCCCCCATCCTA
GCCTCCCATCTTTTACCACCACTACGCACGAGTGCCAATTTACCACCACA
AAATATACATACACAAAAAGATGCAGGCCACATAAAGCCCCTCGTAGATC
TCACGTCACTGCGACTTTTGCTCACCCCTTCCTGCTATCCTTCATCATCC
CAGTCCGCCCCACCACAGGGGAGCAGCACTCATCATGTCTGCGTCGTCTT
TCGCCGCCCGGCATCTCGCTCGGCGCACTCTCCAGTCCCACATCGCCGCC
ACTTCACTTGCTCCTGTACGTCCAGTCCTTCGTAGAAGGCCTCGGCCCTT
TAGCACAACTGTGCACACACCACCGCCTGCTCCGCACGGAGGCTCGATAG
CCGATGCAACGGTGGAGGCCGCTAAGGAGGGTCCGTGGGCTTGGAGGgta
cgtataatccactggctgtatggcattgcctcaaaatctcgctggtgaag
gcccccctccccccccccgtcataatgccagGCATCTCAAGGCATAGAGC
TTCCCTGTGGCTTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCTTCCTTCT
TCCCTTTGCCATCGCAGCGTTCGTAAGCCTTCTCCCAGCTTAATCTTATT
GCAAGCTAACTGAAAGTATCCTCTTCAAGGCTACTTCCAAATTTTCGTGC
TCATCTCCTTGATTCATTTCTTCCTCCCCTTACACGACAAGTAGCTCAAG
GTCGCGGGATTTATCCTAGGGCCCCTGAGCCTGCCTACGGCTTTTGTGGC
CGCCATGGTGTACGACAAGGACTTCCGCGATGACGTAGATGTCCGATTTC
CGGACGTTGgtaagtctctcacggctttctcttctctactagtttagtct
tgtcttcaggacgatcgttgagaagtctcccaccactctctcttcttccc
tcgttcagtcttggtcctgacatcgtcgttgaaggaggggcgttgcttga
acccccttggaaggatccgactttgctttccgtagccgcttaccctacct
ctatgcgattccacttatttagtcagttagttagatagttaattgagtcc
tactttgttgttgtggtcatctattcaaggacgactgttccacctacggt
gaaccgacaaacatcgtgtaccctccacctccccctcgccccctcactcc
tcacaaccctccctttagTTGACTTCATTCGCAATCATGTCGGCTTCGAG
GAAAACATCGCCCGCCGTCGGACAGACCTGGAGAAGGCGTTTATAAGCGA
GCAACgtgaggaagaagcaaagcagggagggagggagggagggagggagg
gagggagggagggaattagtggtggtttgaagagatttcttttatgaaaa
tgttcctgctgaaacgatctcgtctgggtgtcatatcttacccgtccctc
cctccttccctccctccctccagCCCTGGGCGTGACAGTCCAGCTCCAAA
GCGGACAGCGCCTCTCCCTGCAAGTCAGCCCATTGCAAACGTTATCAGGG
CTTTATGAATCACTTCCTTCGGTGGAGGCGGACGAGGCCATCGTTTCGCT
TGAATTTGGAAATATTTCCGAGGAGAAGATCGACGgtgagggagggagtg
agggagggagcgagggagggaggggtggtcacgtaatttatttcatttta
gccccctcgctctatcattcttatatctttgttcaattatcatgtgccgt
ctcaatctctatggcactcgatccctcctttctctccctacctccctccc
tccctccctcccttagACTCTACCTGGATAACGCAGGAACTTCCCCCCTC
GGGCTCACTGGGCATGGTCCCTCCTTCCATCCGGAGCATGACATTGCCGT
CTCTGTGGGATAAAGTGCAGGACCATGAGGGGGGGATGGGGGAAGGGATG
GTGAGGGAATCGATTCGGATGAAGCGGCAGAGGGGAAGTAGGGGCGAGgt
gagagatgagagggaaaagggtgaaggggtggagccagttgttgttcctc
ggacatggtctcatgggctggccggaaaaggccctccgcttgcctttgtg
ttgtactgcgcaattctggaccactttccgcccactagacattttcccat
tacctctccctcctccctccctccttccctcctccttccctccctcctcc
tcttccctagGAACAAGCCATGATCGACGAACTCGATGCCTCCCTCCGCG
ACGTCAACGAAGAGATTGCCCAACTGAAACGTAGCTTGCGTGAAGGATCT
GCCCGCGCCATTGATGACGTTGAGGCGGATATTGCTTACCTACAGGCACG
GAGTAAAGACATCCGACGTCAGCTTCGGGGATTGGGGAAGTGGTGGCGGT
ATTGGTGGTAGTTATGACCGGAAGGAAGGACAGGGAGGCATGCCTCTTGC
GTTCAGAGCACGGCGTGTGAGAAAGAAGAAACAAACGTGGCGCAAAACGA
ACATAAGGGGCATTTTTTCTTTTTGAGTGATTTTGTGCCCAGCGTGCTTG
CGTCGCGGCCTATTGCTTGCTGCCCCACCATTGCTAGGACCAGCAGCAGG
CCGACATTGAGGACCTTGCCTCCCTTTCTATTCCATGCATATATGCAGTG
GAAATCGAATTTCGGCCCCATCTTTGGCAGCCGCGCCGTCTCCAGGCCCC
TGTGTCCTCCCCTTCGTTCTTCGTTTTTCCACCCTGCTCCTTGCATCTTT
CATGCCTCCCTCCCTTGCGTCATTAAACCCATCCAAACGGCCGGTCACTT
CATCGCGTAGCCCTTAACTTTATCATTCTATTTAACTGCGATTGGTATCC
ACTGTACACTCGCAAGGCGCATCATTAAAGCGCGATCCTTGGGATGACCC
GGCTTCGTACCGAGCCGTCGTGTTCTCCGGTCGATCGCCGCGTTTGAAGA
GGGGGAGAAACGTCTTGGCCTTCGC
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protein sequence of NO01G00840.1

>NO01G00840.1-protein ID=NO01G00840.1-protein|Name=NO01G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MSASSFAARHLARRTLQSHIAATSLAPVRPVLRRRPRPFSTTVHTPPPAP
HGGSIADATVEAAKEGPWAWRLKVAGFILGPLSLPTAFVAAMVYDKDFRD
DVDVRFPDVVDFIRNHVGFEENIARRRTDLEKAFISEQPLGVTVQLQSGQ
RLSLQVSPLQTLSGLYESLPSVEADEAIVSLEFGNISEEKIDDSTWITQE
LPPSGSLGMVPPSIRSMTLPSLWDKVQDHEGGMGEGMVRESIRMKRQRGS
RGEEQAMIDELDASLRDVNEEIAQLKRSLREGSARAIDDVEADIAYLQAR
SKDIRRQLRGLGKWWRYWW*
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protein sequence of NO01G00840.2

>NO01G00840.2-protein ID=NO01G00840.2-protein|Name=NO01G00840.2|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp
MVYDKDFRDDVDVRFPDVVDFIRNHVGFEENIARRRTDLEKAFISEQPLG
VTVQLQSGQRLSLQVSPLQTLSGLYESLPSVEADEAIVSLEFGNISEEKI
DDSTWITQELPPSGSLGMVPPSIRSMTLPSLWDKVQDHEGGMGEGMVRES
IRMKRQRGSRGEEQAMIDELDASLRDVNEEIAQLKRSLREGSARAIDDVE
ADIAYLQARSKDIRRQLRGLGKWWRYWW*
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protein sequence of NO01G00840.3

>NO01G00840.3-protein ID=NO01G00840.3-protein|Name=NO01G00840.3|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MSASSFAARHLARRTLQSHIAATSLAPVRPVLRRRPRPFSTTVHTPPPAP
HGGSIADATVEAAKEGPWAWRLKVAGFILGPLSLPTAFVAAMVYDKDFRD
DVDVRFPDVVDFIRNHVGFEENIARRRTDLEKAFISEQPLGVTVQLQSGQ
RLSLQVSPLQTLSGLYESLPSVEADEAIVSLEFGNISEEKIDDSTWITQE
LPPSGSLGMVPPSIRSMTLPSLWDKVQDHEGGMGEGMVRESIRMKRQRGS
RGEVRDEREKGEGVEPVVVPRTWSHGLAGKGPPLAFVLYCAILDHFPPTR
HFPITSPSSLPPSLLLPSLLLFPRNKP*
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protein sequence of NO01G00840.4

>NO01G00840.4-protein ID=NO01G00840.4-protein|Name=NO01G00840.4|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp
MVYDKDFRDDVDVRFPDVVDFIRNHVGFEENIARRRTDLEKAFISEQPLG
VTVQLQSGQRLSLQVSPLQTLSGLYESLPSVEADEAIVSLEFGNISEEKI
DDSTWITQELPPSGSLGMVPPSIRSMTLPSLWDKVQDHEGGMGEGMVRES
IRMKRQRGSRGEEQAMIDELDASLRDVNEEIAQLKRSLREGSARAIDDVE
ADIAYLQARSKDIRRQLRGLGKWWRYWW*
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Synonyms
Publications