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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:212693..216067 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G00840.2 vs.
Match: EWM29015.1 (hypothetical protein Naga_100443g1 [Nannochloropsis gaditana]) HSP 1 Score: 246.1 bits (627), Expect = 1.000e-61 Identity = 120/226 (53.10%), Postives = 169/226 (74.78%), Query Frame = 0
Query: 3 YDKDFRDDVDVRFPDVVDFIRNHVGFEENIARRRTDLEKAFISEQPLGVTVQLQSGQRLSLQVSPLQTLSGLYESLPSVEADEAIVSLEFGNISEEKIDDSTWITQELPPSGSLGMVPPSIRSMTLPSLWDKVQDHEGGMGEGMVRESIRMKRQRGSRGEEQAMIDELDASLRDVNEEIAQLKRSLREGSARAIDDVEADIAYLQARSKDIRRQLRGLGKWWRYWW 229
YD++FRDDV+ FP++VD +R+ VGF+E++ RRR +LEK FIS QP+GV VQL++G+RL+ SPL+ LSGLYE++ E + IVSLEF +IS+E + D T ++++PP +L ++PP R M +PSLWDK+QD GG +++R++R+ + E+Q +I +L+ASL D+ EEI QL+ S EGSARAIDD+EADI YL + +D+RRQLRGLGKWWRYWW
Sbjct: 99 YDREFRDDVEAHFPEIVDVVRHRVGFQEDLGRRRAELEKTFISTQPVGVQVQLRNGRRLTTVASPLRDLSGLYEAVAPREEEGPIVSLEFQDISQENVQD-TSPSRDVPPPPTLAVIPPETRGMNVPSLWDKIQDEVGG------GDTLRLRREGAGQNEKQILIQQLEASLEDLKEEIGQLQASKLEGSARAIDDIEADINYLAEQRRDVRRQLRGLGKWWRYWW 317
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G00840.2 ID=NO01G00840.2|Name=NO01G00840.2|organism=Nannochloropsis oceanica|type=mRNA|length=2371bp CCTTAACCAAAGTACTCGGCCACGCTAACTGTCTAGCGCCGACATTGCAA TACCTTTGTCTTTATAGATTAGACGGTTGATTGCCAGCGGGCCTTACGAG TTTGTACAAGGAAAGAGGCCAGAATTTGTCACCTGCGGGACTAGAGCTGT CTTCAAATTTTCCAAGCAATAGCCAGATAGCCCATTTATCGTCCCTTACG GTCGTTTCATTTGCGAATTTTACACGGTGGTAAGTAGTGCACCTGTGGGG GCATGTCGGAGCTTGGATCCCATGTCTCGCTCCAATTCTTTGCCGCTCCG ACGTAAAGCCATTCAGCATACAATTATGCCTGGAGAATTAGTATGGGGCC TCTGGGACCGTGGTGGTGGTACTCATGGACTGTATGTCCCCCGCCTTTAC CGACCATACCCGAGGCCGTCATGAGAGGCGTCGCAGCTTCCCCCATCCTA GCCTCCCATCTTTTACCACCACTACGCACGAGTGCCAATTTACCACCACA AAATATACATACACAAAAAGATGCAGGCCACATAAAGCCCCTCGTAGATC TCACGTCACTGCGACTTTTGCTCACCCCTTCCTGCTATCCTTCATCATCC CAGTCCGCCCCACCACAGGGGAGCAGCACTCATCATGTCTGCGTCGTCTT TCGCCGCCCGGCATCTCGCTCGGCGCACTCTCCAGTCCCACATCGCCGCC ACTTCACTTGCTCCTGTACGTCCAGTCCTTCGTAGAAGGCCTCGGCCCTT TAGCACAACTGTGCACACACCACCGCCTGCTCCGCACGGAGGCTCGATAG CCGATGCAACGGTGGAGGCCGCTAAGGAGGGTCCGTGGGCTTGGAGGGCA TCTCAAGGCATAGAGCTTCCCTGTGGCTTCCCTCCCTCCTTCCCTCCCTC CCTCCCTCTTCCTTCTTCCCTTTGCCATCGCAGCGTTCGTAAGCCTTCTC CCAGCTTAATCTTATTGCAAGCTAACTGAAAGTATCCTCTTCAAGGCTAC TTCCAAATTTTCGTGCTCATCTCCTTGATTCATTTCTTCCTCCCCTTACA CGACAAGTAGCTCAAGGTCGCGGGATTTATCCTAGGGCCCCTGAGCCTGC CTACGGCTTTTGTGGCCGCCATGGTGTACGACAAGGACTTCCGCGATGAC GTAGATGTCCGATTTCCGGACGTTGTTGACTTCATTCGCAATCATGTCGG CTTCGAGGAAAACATCGCCCGCCGTCGGACAGACCTGGAGAAGGCGTTTA TAAGCGAGCAACCCCTGGGCGTGACAGTCCAGCTCCAAAGCGGACAGCGC CTCTCCCTGCAAGTCAGCCCATTGCAAACGTTATCAGGGCTTTATGAATC ACTTCCTTCGGTGGAGGCGGACGAGGCCATCGTTTCGCTTGAATTTGGAA ATATTTCCGAGGAGAAGATCGACGACTCTACCTGGATAACGCAGGAACTT CCCCCCTCGGGCTCACTGGGCATGGTCCCTCCTTCCATCCGGAGCATGAC ATTGCCGTCTCTGTGGGATAAAGTGCAGGACCATGAGGGGGGGATGGGGG AAGGGATGGTGAGGGAATCGATTCGGATGAAGCGGCAGAGGGGAAGTAGG GGCGAGGAACAAGCCATGATCGACGAACTCGATGCCTCCCTCCGCGACGT CAACGAAGAGATTGCCCAACTGAAACGTAGCTTGCGTGAAGGATCTGCCC GCGCCATTGATGACGTTGAGGCGGATATTGCTTACCTACAGGCACGGAGT AAAGACATCCGACGTCAGCTTCGGGGATTGGGGAAGTGGTGGCGGTATTG GTGGTAGTTATGACCGGAAGGAAGGACAGGGAGGCATGCCTCTTGCGTTC AGAGCACGGCGTGTGAGAAAGAAGAAACAAACGTGGCGCAAAACGAACAT AAGGGGCATTTTTTCTTTTTGAGTGATTTTGTGCCCAGCGTGCTTGCGTC GCGGCCTATTGCTTGCTGCCCCACCATTGCTAGGACCAGCAGCAGGCCGA CATTGAGGACCTTGCCTCCCTTTCTATTCCATGCATATATGCAGTGGAAA TCGAATTTCGGCCCCATCTTTGGCAGCCGCGCCGTCTCCAGGCCCCTGTG TCCTCCCCTTCGTTCTTCGTTTTTCCACCCTGCTCCTTGCATCTTTCATG CCTCCCTCCCTTGCGTCATTAAACCCATCCAAACGGCCGGTCACTTCATC GCGTAGCCCTTAACTTTATCATTCTATTTAACTGCGATTGGTATCCACTG TACACTCGCAAGGCGCATCATTAAAGCGCGATCCTTGGGATGACCCGGCT TCGTACCGAGCCGTCGTGTTCTCCGGTCGATCGCCGCGTTTGAAGAGGGG GAGAAACGTCTTGGCCTTCGC back to topprotein sequence of NO01G00840.2 >NO01G00840.2-protein ID=NO01G00840.2-protein|Name=NO01G00840.2|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp MVYDKDFRDDVDVRFPDVVDFIRNHVGFEENIARRRTDLEKAFISEQPLG VTVQLQSGQRLSLQVSPLQTLSGLYESLPSVEADEAIVSLEFGNISEEKI DDSTWITQELPPSGSLGMVPPSIRSMTLPSLWDKVQDHEGGMGEGMVRES IRMKRQRGSRGEEQAMIDELDASLRDVNEEIAQLKRSLREGSARAIDDVE ADIAYLQARSKDIRRQLRGLGKWWRYWW* back to topmRNA from alignment at chr1:212693..216067+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G00840.2 ID=NO01G00840.2|Name=NO01G00840.2|organism=Nannochloropsis oceanica|type=mRNA|length=3375bp|location=Sequence derived from alignment at chr1:212693..216067+ (Nannochloropsis oceanica) CCTTAACCAAAGTACTCGGCCACGCTAACTGTCTAGCGCCGACATTGCAA
TACCTTTGTCTTTATAGATTAGACGGTTGATTGCCAGCGGGCCTTACGAG
TTTGTACAAGGAAAGAGGCCAGAATTTGTCACCTGCGGGACTAGAGCTGT
CTTCAAATTTTCCAAGCAATAGCCAGATAGCCCATTTATCGTCCCTTACG
GTCGTTTCATTTGCGAATTTTACACGGTGGTAAGTAGTGCACCTGTGGGG
GCATGTCGGAGCTTGGATCCCATGTCTCGCTCCAATTCTTTGCCGCTCCG
ACGTAAAGCCATTCAGCATACAATTATGCCTGGAGAATTAGTATGGGGCC
TCTGGGACCGTGGTGGTGGTACTCATGGACTGTATGTCCCCCGCCTTTAC
CGACCATACCCGAGGCCGTCATGAGAGGCGTCGCAGCTTCCCCCATCCTA
GCCTCCCATCTTTTACCACCACTACGCACGAGTGCCAATTTACCACCACA
AAATATACATACACAAAAAGATGCAGGCCACATAAAGCCCCTCGTAGATC
TCACGTCACTGCGACTTTTGCTCACCCCTTCCTGCTATCCTTCATCATCC
CAGTCCGCCCCACCACAGGGGAGCAGCACTCATCATGTCTGCGTCGTCTT
TCGCCGCCCGGCATCTCGCTCGGCGCACTCTCCAGTCCCACATCGCCGCC
ACTTCACTTGCTCCTGTACGTCCAGTCCTTCGTAGAAGGCCTCGGCCCTT
TAGCACAACTGTGCACACACCACCGCCTGCTCCGCACGGAGGCTCGATAG
CCGATGCAACGGTGGAGGCCGCTAAGGAGGGTCCGTGGGCTTGGAGGGTA
CGTATAATCCACTGGCTGTATGGCATTGCCTCAAAATCTCGCTGGTGAAG
GCCCCCCTCCCCCCCCCCGTCATAATGCCAGGCATCTCAAGGCATAGAGC
TTCCCTGTGGCTTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCTTCCTTCT
TCCCTTTGCCATCGCAGCGTTCGTAAGCCTTCTCCCAGCTTAATCTTATT
GCAAGCTAACTGAAAGTATCCTCTTCAAGGCTACTTCCAAATTTTCGTGC
TCATCTCCTTGATTCATTTCTTCCTCCCCTTACACGACAAGTAGCTCAAG
GTCGCGGGATTTATCCTAGGGCCCCTGAGCCTGCCTACGGCTTTTGTGGC
CGCCATGGTGTACGACAAGGACTTCCGCGATGACGTAGATGTCCGATTTC
CGGACGTTGGTAAGTCTCTCACGGCTTTCTCTTCTCTACTAGTTTAGTCT
TGTCTTCAGGACGATCGTTGAGAAGTCTCCCACCACTCTCTCTTCTTCCC
TCGTTCAGTCTTGGTCCTGACATCGTCGTTGAAGGAGGGGCGTTGCTTGA
ACCCCCTTGGAAGGATCCGACTTTGCTTTCCGTAGCCGCTTACCCTACCT
CTATGCGATTCCACTTATTTAGTCAGTTAGTTAGATAGTTAATTGAGTCC
TACTTTGTTGTTGTGGTCATCTATTCAAGGACGACTGTTCCACCTACGGT
GAACCGACAAACATCGTGTACCCTCCACCTCCCCCTCGCCCCCTCACTCC
TCACAACCCTCCCTTTAGTTGACTTCATTCGCAATCATGTCGGCTTCGAG
GAAAACATCGCCCGCCGTCGGACAGACCTGGAGAAGGCGTTTATAAGCGA
GCAACGTGAGGAAGAAGCAAAGCAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAATTAGTGGTGGTTTGAAGAGATTTCTTTTATGAAAA
TGTTCCTGCTGAAACGATCTCGTCTGGGTGTCATATCTTACCCGTCCCTC
CCTCCTTCCCTCCCTCCCTCCAGCCCTGGGCGTGACAGTCCAGCTCCAAA
GCGGACAGCGCCTCTCCCTGCAAGTCAGCCCATTGCAAACGTTATCAGGG
CTTTATGAATCACTTCCTTCGGTGGAGGCGGACGAGGCCATCGTTTCGCT
TGAATTTGGAAATATTTCCGAGGAGAAGATCGACGGTGAGGGAGGGAGTG
AGGGAGGGAGCGAGGGAGGGAGGGGTGGTCACGTAATTTATTTCATTTTA
GCCCCCTCGCTCTATCATTCTTATATCTTTGTTCAATTATCATGTGCCGT
CTCAATCTCTATGGCACTCGATCCCTCCTTTCTCTCCCTACCTCCCTCCC
TCCCTCCCTCCCTTAGACTCTACCTGGATAACGCAGGAACTTCCCCCCTC
GGGCTCACTGGGCATGGTCCCTCCTTCCATCCGGAGCATGACATTGCCGT
CTCTGTGGGATAAAGTGCAGGACCATGAGGGGGGGATGGGGGAAGGGATG
GTGAGGGAATCGATTCGGATGAAGCGGCAGAGGGGAAGTAGGGGCGAGGT
GAGAGATGAGAGGGAAAAGGGTGAAGGGGTGGAGCCAGTTGTTGTTCCTC
GGACATGGTCTCATGGGCTGGCCGGAAAAGGCCCTCCGCTTGCCTTTGTG
TTGTACTGCGCAATTCTGGACCACTTTCCGCCCACTAGACATTTTCCCAT
TACCTCTCCCTCCTCCCTCCCTCCTTCCCTCCTCCTTCCCTCCCTCCTCC
TCTTCCCTAGGAACAAGCCATGATCGACGAACTCGATGCCTCCCTCCGCG
ACGTCAACGAAGAGATTGCCCAACTGAAACGTAGCTTGCGTGAAGGATCT
GCCCGCGCCATTGATGACGTTGAGGCGGATATTGCTTACCTACAGGCACG
GAGTAAAGACATCCGACGTCAGCTTCGGGGATTGGGGAAGTGGTGGCGGT
ATTGGTGGTAGTTATGACCGGAAGGAAGGACAGGGAGGCATGCCTCTTGC
GTTCAGAGCACGGCGTGTGAGAAAGAAGAAACAAACGTGGCGCAAAACGA
ACATAAGGGGCATTTTTTCTTTTTGAGTGATTTTGTGCCCAGCGTGCTTG
CGTCGCGGCCTATTGCTTGCTGCCCCACCATTGCTAGGACCAGCAGCAGG
CCGACATTGAGGACCTTGCCTCCCTTTCTATTCCATGCATATATGCAGTG
GAAATCGAATTTCGGCCCCATCTTTGGCAGCCGCGCCGTCTCCAGGCCCC
TGTGTCCTCCCCTTCGTTCTTCGTTTTTCCACCCTGCTCCTTGCATCTTT
CATGCCTCCCTCCCTTGCGTCATTAAACCCATCCAAACGGCCGGTCACTT
CATCGCGTAGCCCTTAACTTTATCATTCTATTTAACTGCGATTGGTATCC
ACTGTACACTCGCAAGGCGCATCATTAAAGCGCGATCCTTGGGATGACCC
GGCTTCGTACCGAGCCGTCGTGTTCTCCGGTCGATCGCCGCGTTTGAAGA
GGGGGAGAAACGTCTTGGCCTTCGC back to topCoding sequence (CDS) from alignment at chr1:212693..216067+ >NO01G00840.2 ID=NO01G00840.2|Name=NO01G00840.2|organism=Nannochloropsis oceanica|type=CDS|length=687bp|location=Sequence derived from alignment at chr1:212693..216067+ (Nannochloropsis oceanica) ATGGTGTACGACAAGGACTTCCGCGATGACGTAGATGTCCGATTTCCGGA CGTTGTTGACTTCATTCGCAATCATGTCGGCTTCGAGGAAAACATCGCCC GCCGTCGGACAGACCTGGAGAAGGCGTTTATAAGCGAGCAACCCCTGGGC GTGACAGTCCAGCTCCAAAGCGGACAGCGCCTCTCCCTGCAAGTCAGCCC ATTGCAAACGTTATCAGGGCTTTATGAATCACTTCCTTCGGTGGAGGCGG ACGAGGCCATCGTTTCGCTTGAATTTGGAAATATTTCCGAGGAGAAGATC GACGACTCTACCTGGATAACGCAGGAACTTCCCCCCTCGGGCTCACTGGG CATGGTCCCTCCTTCCATCCGGAGCATGACATTGCCGTCTCTGTGGGATA AAGTGCAGGACCATGAGGGGGGGATGGGGGAAGGGATGGTGAGGGAATCG ATTCGGATGAAGCGGCAGAGGGGAAGTAGGGGCGAGGAACAAGCCATGAT CGACGAACTCGATGCCTCCCTCCGCGACGTCAACGAAGAGATTGCCCAAC TGAAACGTAGCTTGCGTGAAGGATCTGCCCGCGCCATTGATGACGTTGAG GCGGATATTGCTTACCTACAGGCACGGAGTAAAGACATCCGACGTCAGCT TCGGGGATTGGGGAAGTGGTGGCGGTATTGGTGGTAG back to top
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