NO01G00840.1, NO01G00840.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00840.1
Unique NameNO01G00840.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1784
Alignment locationchr1:212693..216067 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:212693..216067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G00840.1 vs.
Match: EWM29015.1 (hypothetical protein Naga_100443g1 [Nannochloropsis gaditana])

HSP 1 Score: 301.2 bits (770), Expect = 3.800e-78
Identity = 159/324 (49.07%), Postives = 219/324 (67.59%), Query Frame = 0 
Query:    1 MSASSFAARHLARRTLQSHIAATSLAPVRPVLRRRPRP--FSTTVHTPP---PAPHGGSIADATVEAAKEGPWAWRLKVAGFILGPLSLPTAFVAAMVYDKDFRDDVDVRFPDVVDFIRNHVGFEENIARRRTDLEKAFISEQPLGVTVQLQSGQRLSLQVSPLQTLSGLYESLPSVEADEAIVSLEFGNISEEKIDDSTWITQELPPSGSLGMVPPSIRSMTLPSLWDKVQDHEGGMGEGMVRESIRMKRQRGSRGEEQAMIDELDASLRDVNEEIAQLKRSLREGSARAIDDVEADIAYLQARSKDIRRQLRGLGKWWRYWW 320
            M   S   R L  +T ++H+     +  RP+ R RPR   FST    PP   P      I+  +VE   E  W W++KVAGFIL PLSLP A VA + YD++FRDDV+  FP++VD +R+ VGF+E++ RRR +LEK FIS QP+GV VQL++G+RL+   SPL+ LSGLYE++   E +  IVSLEF +IS+E + D T  ++++PP  +L ++PP  R M +PSLWDK+QD  GG       +++R++R+   + E+Q +I +L+ASL D+ EEI QL+ S  EGSARAIDD+EADI YL  + +D+RRQLRGLGKWWRYWW
Sbjct:    1 MPTLSILYRPLCHQTFRAHVVKWGKSARRPLRRFRPRQQAFSTASEAPPSSLPPSTENPISSRSVEGNNENSWGWKVKVAGFILVPLSLPAAVVAGLKYDREFRDDVEAHFPEIVDVVRHRVGFQEDLGRRRAELEKTFISTQPVGVQVQLRNGRRLTTVASPLRDLSGLYEAVAPREEEGPIVSLEFQDISQENVQD-TSPSRDVPPPPTLAVIPPETRGMNVPSLWDKIQDEVGG------GDTLRLRREGAGQNEKQILIQQLEASLEDLKEEIGQLQASKLEGSARAIDDIEADINYLAEQRRDVRRQLRGLGKWWRYWW 317
The following BLAST results are available for this feature:
BLAST of NO01G00840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29015.13.800e-7849.07hypothetical protein Naga_100443g1 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00840NO01G00840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00840.1NO01G00840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00840.1.cds1NO01G00840.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00840.1.cds2NO01G00840.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00840.1.cds3NO01G00840.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00840.1.cds4NO01G00840.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00840.1.cds5NO01G00840.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00840.1.cds6NO01G00840.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00840.1 ID=NO01G00840.1|Name=NO01G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1784bp
CCTTAACCAAAGTACTCGGCCACGCTAACTGTCTAGCGCCGACATTGCAA
TACCTTTGTCTTTATAGATTAGACGGTTGATTGCCAGCGGGCCTTACGAG
TTTGTACAAGGAAAGAGGCCAGAATTTGTCACCTGCGGGACTAGAGCTGT
CTTCAAATTTTCCAAGCAATAGCCAGATAGCCCATTTATCGTCCCTTACG
GTCGTTTCATTTGCGAATTTTACACGGTGTCCGCCCCACCACAGGGGAGC
AGCACTCATCATGTCTGCGTCGTCTTTCGCCGCCCGGCATCTCGCTCGGC
GCACTCTCCAGTCCCACATCGCCGCCACTTCACTTGCTCCTGTACGTCCA
GTCCTTCGTAGAAGGCCTCGGCCCTTTAGCACAACTGTGCACACACCACC
GCCTGCTCCGCACGGAGGCTCGATAGCCGATGCAACGGTGGAGGCCGCTA
AGGAGGGTCCGTGGGCTTGGAGGCTCAAGGTCGCGGGATTTATCCTAGGG
CCCCTGAGCCTGCCTACGGCTTTTGTGGCCGCCATGGTGTACGACAAGGA
CTTCCGCGATGACGTAGATGTCCGATTTCCGGACGTTGTTGACTTCATTC
GCAATCATGTCGGCTTCGAGGAAAACATCGCCCGCCGTCGGACAGACCTG
GAGAAGGCGTTTATAAGCGAGCAACCCCTGGGCGTGACAGTCCAGCTCCA
AAGCGGACAGCGCCTCTCCCTGCAAGTCAGCCCATTGCAAACGTTATCAG
GGCTTTATGAATCACTTCCTTCGGTGGAGGCGGACGAGGCCATCGTTTCG
CTTGAATTTGGAAATATTTCCGAGGAGAAGATCGACGACTCTACCTGGAT
AACGCAGGAACTTCCCCCCTCGGGCTCACTGGGCATGGTCCCTCCTTCCA
TCCGGAGCATGACATTGCCGTCTCTGTGGGATAAAGTGCAGGACCATGAG
GGGGGGATGGGGGAAGGGATGGTGAGGGAATCGATTCGGATGAAGCGGCA
GAGGGGAAGTAGGGGCGAGGAACAAGCCATGATCGACGAACTCGATGCCT
CCCTCCGCGACGTCAACGAAGAGATTGCCCAACTGAAACGTAGCTTGCGT
GAAGGATCTGCCCGCGCCATTGATGACGTTGAGGCGGATATTGCTTACCT
ACAGGCACGGAGTAAAGACATCCGACGTCAGCTTCGGGGATTGGGGAAGT
GGTGGCGGTATTGGTGGTAGTTATGACCGGAAGGAAGGACAGGGAGGCAT
GCCTCTTGCGTTCAGAGCACGGCGTGTGAGAAAGAAGAAACAAACGTGGC
GCAAAACGAACATAAGGGGCATTTTTTCTTTTTGAGTGATTTTGTGCCCA
GCGTGCTTGCGTCGCGGCCTATTGCTTGCTGCCCCACCATTGCTAGGACC
AGCAGCAGGCCGACATTGAGGACCTTGCCTCCCTTTCTATTCCATGCATA
TATGCAGTGGAAATCGAATTTCGGCCCCATCTTTGGCAGCCGCGCCGTCT
CCAGGCCCCTGTGTCCTCCCCTTCGTTCTTCGTTTTTCCACCCTGCTCCT
TGCATCTTTCATGCCTCCCTCCCTTGCGTCATTAAACCCATCCAAACGGC
CGGTCACTTCATCGCGTAGCCCTTAACTTTATCATTCTATTTAACTGCGA
TTGGTATCCACTGTACACTCGCAAGGCGCATCATTAAAGCGCGATCCTTG
GGATGACCCGGCTTCGTACCGAGCCGTCGTGTTCTCCGGTCGATCGCCGC
GTTTGAAGAGGGGGAGAAACGTCTTGGCCTTCGC
back to top

protein sequence of NO01G00840.1

>NO01G00840.1-protein ID=NO01G00840.1-protein|Name=NO01G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MSASSFAARHLARRTLQSHIAATSLAPVRPVLRRRPRPFSTTVHTPPPAP
HGGSIADATVEAAKEGPWAWRLKVAGFILGPLSLPTAFVAAMVYDKDFRD
DVDVRFPDVVDFIRNHVGFEENIARRRTDLEKAFISEQPLGVTVQLQSGQ
RLSLQVSPLQTLSGLYESLPSVEADEAIVSLEFGNISEEKIDDSTWITQE
LPPSGSLGMVPPSIRSMTLPSLWDKVQDHEGGMGEGMVRESIRMKRQRGS
RGEEQAMIDELDASLRDVNEEIAQLKRSLREGSARAIDDVEADIAYLQAR
SKDIRRQLRGLGKWWRYWW*
back to top

mRNA from alignment at chr1:212693..216067+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00840.1 ID=NO01G00840.1|Name=NO01G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=3375bp|location=Sequence derived from alignment at chr1:212693..216067+ (Nannochloropsis oceanica)
CCTTAACCAAAGTACTCGGCCACGCTAACTGTCTAGCGCCGACATTGCAA
TACCTTTGTCTTTATAGATTAGACGGTTGATTGCCAGCGGGCCTTACGAG
TTTGTACAAGGAAAGAGGCCAGAATTTGTCACCTGCGGGACTAGAGCTGT
CTTCAAATTTTCCAAGCAATAGCCAGATAGCCCATTTATCGTCCCTTACG
GTCGTTTCATTTGCGAATTTTACACGGTGGTAAGTAGTGCACCTGTGGGG
GCATGTCGGAGCTTGGATCCCATGTCTCGCTCCAATTCTTTGCCGCTCCG
ACGTAAAGCCATTCAGCATACAATTATGCCTGGAGAATTAGTATGGGGCC
TCTGGGACCGTGGTGGTGGTACTCATGGACTGTATGTCCCCCGCCTTTAC
CGACCATACCCGAGGCCGTCATGAGAGGCGTCGCAGCTTCCCCCATCCTA
GCCTCCCATCTTTTACCACCACTACGCACGAGTGCCAATTTACCACCACA
AAATATACATACACAAAAAGATGCAGGCCACATAAAGCCCCTCGTAGATC
TCACGTCACTGCGACTTTTGCTCACCCCTTCCTGCTATCCTTCATCATCC
CAGTCCGCCCCACCACAGGGGAGCAGCACTCATCATGTCTGCGTCGTCTT
TCGCCGCCCGGCATCTCGCTCGGCGCACTCTCCAGTCCCACATCGCCGCC
ACTTCACTTGCTCCTGTACGTCCAGTCCTTCGTAGAAGGCCTCGGCCCTT
TAGCACAACTGTGCACACACCACCGCCTGCTCCGCACGGAGGCTCGATAG
CCGATGCAACGGTGGAGGCCGCTAAGGAGGGTCCGTGGGCTTGGAGGGTA
CGTATAATCCACTGGCTGTATGGCATTGCCTCAAAATCTCGCTGGTGAAG
GCCCCCCTCCCCCCCCCCGTCATAATGCCAGGCATCTCAAGGCATAGAGC
TTCCCTGTGGCTTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCTTCCTTCT
TCCCTTTGCCATCGCAGCGTTCGTAAGCCTTCTCCCAGCTTAATCTTATT
GCAAGCTAACTGAAAGTATCCTCTTCAAGGCTACTTCCAAATTTTCGTGC
TCATCTCCTTGATTCATTTCTTCCTCCCCTTACACGACAAGTAGCTCAAG
GTCGCGGGATTTATCCTAGGGCCCCTGAGCCTGCCTACGGCTTTTGTGGC
CGCCATGGTGTACGACAAGGACTTCCGCGATGACGTAGATGTCCGATTTC
CGGACGTTGGTAAGTCTCTCACGGCTTTCTCTTCTCTACTAGTTTAGTCT
TGTCTTCAGGACGATCGTTGAGAAGTCTCCCACCACTCTCTCTTCTTCCC
TCGTTCAGTCTTGGTCCTGACATCGTCGTTGAAGGAGGGGCGTTGCTTGA
ACCCCCTTGGAAGGATCCGACTTTGCTTTCCGTAGCCGCTTACCCTACCT
CTATGCGATTCCACTTATTTAGTCAGTTAGTTAGATAGTTAATTGAGTCC
TACTTTGTTGTTGTGGTCATCTATTCAAGGACGACTGTTCCACCTACGGT
GAACCGACAAACATCGTGTACCCTCCACCTCCCCCTCGCCCCCTCACTCC
TCACAACCCTCCCTTTAGTTGACTTCATTCGCAATCATGTCGGCTTCGAG
GAAAACATCGCCCGCCGTCGGACAGACCTGGAGAAGGCGTTTATAAGCGA
GCAACGTGAGGAAGAAGCAAAGCAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAATTAGTGGTGGTTTGAAGAGATTTCTTTTATGAAAA
TGTTCCTGCTGAAACGATCTCGTCTGGGTGTCATATCTTACCCGTCCCTC
CCTCCTTCCCTCCCTCCCTCCAGCCCTGGGCGTGACAGTCCAGCTCCAAA
GCGGACAGCGCCTCTCCCTGCAAGTCAGCCCATTGCAAACGTTATCAGGG
CTTTATGAATCACTTCCTTCGGTGGAGGCGGACGAGGCCATCGTTTCGCT
TGAATTTGGAAATATTTCCGAGGAGAAGATCGACGGTGAGGGAGGGAGTG
AGGGAGGGAGCGAGGGAGGGAGGGGTGGTCACGTAATTTATTTCATTTTA
GCCCCCTCGCTCTATCATTCTTATATCTTTGTTCAATTATCATGTGCCGT
CTCAATCTCTATGGCACTCGATCCCTCCTTTCTCTCCCTACCTCCCTCCC
TCCCTCCCTCCCTTAGACTCTACCTGGATAACGCAGGAACTTCCCCCCTC
GGGCTCACTGGGCATGGTCCCTCCTTCCATCCGGAGCATGACATTGCCGT
CTCTGTGGGATAAAGTGCAGGACCATGAGGGGGGGATGGGGGAAGGGATG
GTGAGGGAATCGATTCGGATGAAGCGGCAGAGGGGAAGTAGGGGCGAGGT
GAGAGATGAGAGGGAAAAGGGTGAAGGGGTGGAGCCAGTTGTTGTTCCTC
GGACATGGTCTCATGGGCTGGCCGGAAAAGGCCCTCCGCTTGCCTTTGTG
TTGTACTGCGCAATTCTGGACCACTTTCCGCCCACTAGACATTTTCCCAT
TACCTCTCCCTCCTCCCTCCCTCCTTCCCTCCTCCTTCCCTCCCTCCTCC
TCTTCCCTAGGAACAAGCCATGATCGACGAACTCGATGCCTCCCTCCGCG
ACGTCAACGAAGAGATTGCCCAACTGAAACGTAGCTTGCGTGAAGGATCT
GCCCGCGCCATTGATGACGTTGAGGCGGATATTGCTTACCTACAGGCACG
GAGTAAAGACATCCGACGTCAGCTTCGGGGATTGGGGAAGTGGTGGCGGT
ATTGGTGGTAGTTATGACCGGAAGGAAGGACAGGGAGGCATGCCTCTTGC
GTTCAGAGCACGGCGTGTGAGAAAGAAGAAACAAACGTGGCGCAAAACGA
ACATAAGGGGCATTTTTTCTTTTTGAGTGATTTTGTGCCCAGCGTGCTTG
CGTCGCGGCCTATTGCTTGCTGCCCCACCATTGCTAGGACCAGCAGCAGG
CCGACATTGAGGACCTTGCCTCCCTTTCTATTCCATGCATATATGCAGTG
GAAATCGAATTTCGGCCCCATCTTTGGCAGCCGCGCCGTCTCCAGGCCCC
TGTGTCCTCCCCTTCGTTCTTCGTTTTTCCACCCTGCTCCTTGCATCTTT
CATGCCTCCCTCCCTTGCGTCATTAAACCCATCCAAACGGCCGGTCACTT
CATCGCGTAGCCCTTAACTTTATCATTCTATTTAACTGCGATTGGTATCC
ACTGTACACTCGCAAGGCGCATCATTAAAGCGCGATCCTTGGGATGACCC
GGCTTCGTACCGAGCCGTCGTGTTCTCCGGTCGATCGCCGCGTTTGAAGA
GGGGGAGAAACGTCTTGGCCTTCGC
back to top

Coding sequence (CDS) from alignment at chr1:212693..216067+

>NO01G00840.1 ID=NO01G00840.1|Name=NO01G00840.1|organism=Nannochloropsis oceanica|type=CDS|length=960bp|location=Sequence derived from alignment at chr1:212693..216067+ (Nannochloropsis oceanica)
ATGTCTGCGTCGTCTTTCGCCGCCCGGCATCTCGCTCGGCGCACTCTCCA
GTCCCACATCGCCGCCACTTCACTTGCTCCTGTACGTCCAGTCCTTCGTA
GAAGGCCTCGGCCCTTTAGCACAACTGTGCACACACCACCGCCTGCTCCG
CACGGAGGCTCGATAGCCGATGCAACGGTGGAGGCCGCTAAGGAGGGTCC
GTGGGCTTGGAGGCTCAAGGTCGCGGGATTTATCCTAGGGCCCCTGAGCC
TGCCTACGGCTTTTGTGGCCGCCATGGTGTACGACAAGGACTTCCGCGAT
GACGTAGATGTCCGATTTCCGGACGTTGTTGACTTCATTCGCAATCATGT
CGGCTTCGAGGAAAACATCGCCCGCCGTCGGACAGACCTGGAGAAGGCGT
TTATAAGCGAGCAACCCCTGGGCGTGACAGTCCAGCTCCAAAGCGGACAG
CGCCTCTCCCTGCAAGTCAGCCCATTGCAAACGTTATCAGGGCTTTATGA
ATCACTTCCTTCGGTGGAGGCGGACGAGGCCATCGTTTCGCTTGAATTTG
GAAATATTTCCGAGGAGAAGATCGACGACTCTACCTGGATAACGCAGGAA
CTTCCCCCCTCGGGCTCACTGGGCATGGTCCCTCCTTCCATCCGGAGCAT
GACATTGCCGTCTCTGTGGGATAAAGTGCAGGACCATGAGGGGGGGATGG
GGGAAGGGATGGTGAGGGAATCGATTCGGATGAAGCGGCAGAGGGGAAGT
AGGGGCGAGGAACAAGCCATGATCGACGAACTCGATGCCTCCCTCCGCGA
CGTCAACGAAGAGATTGCCCAACTGAAACGTAGCTTGCGTGAAGGATCTG
CCCGCGCCATTGATGACGTTGAGGCGGATATTGCTTACCTACAGGCACGG
AGTAAAGACATCCGACGTCAGCTTCGGGGATTGGGGAAGTGGTGGCGGTA
TTGGTGGTAG
back to top
Synonyms
Publications