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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:895913..897608 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G03070.1 vs.
Match: EWM27505.1 (u3 small nucleolar rna-associated protein 15 [Nannochloropsis gaditana]) HSP 1 Score: 496.9 bits (1278), Expect = 7.800e-137 Identity = 309/582 (53.09%), Postives = 365/582 (62.71%), Query Frame = 0
Query: 1 MADYKKVRHRQRPRPVERPKPDGNFWAKFIK-------------------PTDL-------------------------SFPGAVYALDFHPLAPHDALVTASARLSLVSISRGAPKVS-------KTFSRLNGLAYSGVFRPTDGRLIACGDDGGVVTVFDVATKASLRQFTTAANHRGTTGAAARVVRWRRDGLALFSGSDDKCVRYWDL-GTGQLLTTIPQAHGDYVRCGATNPAAASE--IPVEACVVLPGGSLLVSAGTDTIKIWDLLGGGGEGNSPL-HSFSNHAKTITSLTIDREGSRLLSSSLDGHVKVYDLQTYDVLHSLRFSGPLLSVGLSPNKGKLMVGKADGCLSIRTRRAATSTTSSSLPSSSSGL----FPKTSTNPLLFGGTTKYFQRGKNAVASTGDFEVELAKRHRLAPYDVALKGFKYHEALDRALESRNPRTIVAVLDELVMRRGLKISLTGRDEAGLEPLLAFLARYLNHPDFALSLGEACHFVLDMYAPMVGQSAVLDELMGRVARGVKAEVGVQREMLELLGAMEMVMATQIEGGGGGGGGRGGGCGVVRGGWKGGEGGE 524
MADYKKVRHRQRPRPVERPKPDGNFW+KFIK P D F G Y+ F P L+ +V++ A K S T G A V DG + G D V +D+ T L A GA + SGS D ++ WD+ G G G G+ P + PVEAC+ LPGGSLLVSAG +TIK+WDLLGGGG + L H+FSNHAKTITSLT DREGSRLLS+SLDGHVKVYDLQTYDVLHS R +GPLLSVGL+P+ GKL++G+ADG S+RTRR+A ++TS++ SSSSGL P+T PLLFGGT ++F RGKNAVA GDF+VELAKR RLAPYD++LKGF+YHEALD+AL SRNPRTIVAVLDEL+MRRGL+++LTGRDEAG+EPLLAFLARYLNHPD+A SL + CH VLD+YAPM+GQS VLDEL+GRVARGVKAEV VQREML L+GAM+M++ATQ+E G GG GGW GG E
Sbjct: 1 MADYKKVRHRQRPRPVERPKPDGNFWSKFIKPTDLSFPGAVYAVDFNPLSPYDALVTASARLSLVSLSRGSPKVSKTFSRFNGLAYSGVFRPT--DGKLIACGDDNGVVTVFDMATKASLRQFTTAATHRGTTGAAARIVRWRKDGLALFSGSDDKCVRYWDLGTAQLLTTIPQAHKDYVRCGA----INPAAASELFVSGSYDHTLKVWDMRGRG--------GGGG----GSNRPVSRFNHGCPVEACLALPGGSLLVSAGGETIKVWDLLGGGGGAHGGLLHAFSNHAKTITSLTTDREGSRLLSASLDGHVKVYDLQTYDVLHSFRAAGPLLSVGLAPDNGKLVMGQADGTFSVRTRRSALTSTSAAPISSSSGLPSSELPRT---PLLFGGTARHFHRGKNAVAGAGDFQVELAKRQRLAPYDISLKGFRYHEALDKALASRNPRTIVAVLDELIMRRGLRVALTGRDEAGMEPLLAFLARYLNHPDYASSLSDVCHMVLDIYAPMLGQSPVLDELIGRVARGVKAEVAVQREMLGLVGAMDMLIATQLEASVGEGGR--------DGGWPGGNEEE 553
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G03070.1 ID=NO09G03070.1|Name=NO09G03070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1590bp ATGGCAGACTACAAAAAAGTACGCCATCGGCAACGGCCTCGACCGGTAGA GCGCCCCAAACCGGACGGCAACTTCTGGGCCAAGTTTATCAAGCCCACCG ACCTCTCCTTCCCCGGCGCCGTCTACGCCTTGGATTTTCACCCTCTGGCC CCGCATGATGCCCTCGTCACAGCCTCGGCACGATTGTCCTTAGTCTCAAT CAGTCGTGGTGCACCCAAAGTCAGCAAGACGTTTTCCCGGCTGAATGGTT TGGCGTACTCCGGAGTCTTCCGTCCAACCGACGGGCGGCTCATAGCGTGT GGAGACGATGGGGGCGTCGTCACTGTCTTTGACGTGGCCACCAAGGCCTC CCTCCGTCAATTTACCACCGCAGCCAATCACCGTGGTACCACAGGCGCAG CTGCTCGTGTTGTGCGCTGGCGAAGGGATGGCCTGGCATTGTTTTCGGGG TCGGATGATAAGTGCGTGCGGTATTGGGACTTGGGGACAGGCCAGCTCTT GACCACAATCCCACAAGCCCATGGGGACTACGTCCGTTGCGGTGCCACTA ACCCTGCAGCAGCCTCGGAGATTCCTGTGGAGGCCTGCGTGGTGCTACCA GGGGGCTCCTTGCTCGTCTCCGCCGGAACAGACACTATCAAAATATGGGA TTTGCTCGGCGGCGGTGGAGAAGGCAATAGTCCTCTGCATTCTTTCTCAA ATCACGCCAAGACCATCACTAGCCTTACAATCGATCGAGAGGGCTCTCGC CTGCTGTCCTCCTCACTAGATGGGCACGTCAAAGTGTACGACCTTCAGAC GTACGATGTCCTCCACTCTCTCCGGTTCTCCGGACCCCTCCTCAGCGTCG GTCTCTCCCCCAACAAGGGCAAGCTCATGGTCGGGAAAGCTGATGGATGC CTCTCCATTCGCACCCGCCGCGCCGCCACCAGCACGACCTCGTCCTCCCT CCCTTCCTCGTCCTCTGGTCTTTTCCCCAAAACCAGCACTAATCCCCTGC TTTTCGGTGGTACGACCAAATATTTCCAACGAGGAAAAAATGCTGTTGCG TCCACGGGGGATTTTGAGGTGGAGCTGGCGAAGCGTCATCGACTCGCGCC TTACGACGTAGCCTTGAAGGGATTCAAGTACCATGAGGCTCTGGATAGAG CGCTGGAAAGTCGGAATCCGCGTACGATCGTCGCTGTTCTCGACGAGCTG GTGATGCGGAGGGGATTGAAGATTTCGCTTACCGGGAGGGATGAAGCGGG CCTGGAGCCGTTACTGGCTTTCTTGGCACGATATTTGAATCATCCTGATT TTGCGCTGTCCCTTGGAGAGGCCTGCCATTTTGTACTAGACATGTACGCA CCTATGGTGGGGCAGTCTGCGGTGCTTGACGAGCTAATGGGGAGGGTGGC CCGGGGGGTTAAGGCTGAAGTTGGAGTGCAGAGGGAGATGCTGGAGTTGC TGGGAGCGATGGAGATGGTGATGGCGACCCAGATCGAGGGGGGGGGGGGG GGGGGGGGAGGGAGGGGGGGGGGATGTGGAGTTGTTAGAGGGGGATGGAA AGGAGGAGAAGGAGGAGAAGGAGGGGGAGGAGGCCAGTGA back to topprotein sequence of NO09G03070.1 >NO09G03070.1-protein ID=NO09G03070.1-protein|Name=NO09G03070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=530bp MADYKKVRHRQRPRPVERPKPDGNFWAKFIKPTDLSFPGAVYALDFHPLA PHDALVTASARLSLVSISRGAPKVSKTFSRLNGLAYSGVFRPTDGRLIAC GDDGGVVTVFDVATKASLRQFTTAANHRGTTGAAARVVRWRRDGLALFSG SDDKCVRYWDLGTGQLLTTIPQAHGDYVRCGATNPAAASEIPVEACVVLP GGSLLVSAGTDTIKIWDLLGGGGEGNSPLHSFSNHAKTITSLTIDREGSR LLSSSLDGHVKVYDLQTYDVLHSLRFSGPLLSVGLSPNKGKLMVGKADGC LSIRTRRAATSTTSSSLPSSSSGLFPKTSTNPLLFGGTTKYFQRGKNAVA STGDFEVELAKRHRLAPYDVALKGFKYHEALDRALESRNPRTIVAVLDEL VMRRGLKISLTGRDEAGLEPLLAFLARYLNHPDFALSLGEACHFVLDMYA PMVGQSAVLDELMGRVARGVKAEVGVQREMLELLGAMEMVMATQIEGGGG GGGGRGGGCGVVRGGWKGGEGGEGGGGGQ* back to topmRNA from alignment at chr9:895913..897608- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G03070.1 ID=NO09G03070.1|Name=NO09G03070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1696bp|location=Sequence derived from alignment at chr9:895913..897608- (Nannochloropsis oceanica) ATGGCAGACTACAAAAAAGTACGCCATCGGCAACGGCCTCGACCGGTAGA
GCGCCCCAAACCGGACGGCAACTTCTGGGCCAAGTTTATCAAGCCCACCG
ACCTCTCCTTCCCCGGCGCCGTCTACGCCTTGGATTTTCACCCTCTGGCC
CCGCATGATGCCCTCGTCACAGCCTCGGCACGATTGTCCTTAGTCTCAAT
CAGTCGTGGTGCACCCAAAGTCAGCAAGACGTTTTCCCGGCTGAATGGTT
TGGCGTACTCCGGAGTCTTCCGTCCAACCGACGGGCGGCTCATAGCGTGT
GGAGACGATGGGGGCGTCGTCACTGTCTTTGACGTGGCCACCAAGGCCTC
CCTCCGTCAATTTACCACCGCAGCCAATCACCGTGGTACCACAGGCGCAG
CTGCTCGTGTTGTGCGCTGGCGAAGGGATGGCCTGGCATTGTTTTCGGGG
TCGGATGATAAGTGCGTGCGGTATTGGGACTTGGGGACAGGCCAGCTCTT
GACCACAATCCCACAAGCCCATGGGGACTACGTCCGTTGCGGTGCCACTA
ACCCTGCAGCAGCCTCGGAGATGTTCGTGTCAGGCTCGTATGACCACACA
TTGAAACTATGGGACATGCGAGGGAGGGGGGAGGGGGGGAGGGAGCAATC
GGCCAGTTGCTAGCTTTGACCACGGCAGTCCTGTGGAGGCCTGCGTGGTG
CTACCAGGGGGCTCCTTGCTCGTCTCCGCCGGAACAGACACTATCAAAAT
ATGGGATTTGCTCGGCGGCGGTGGAGAAGGCAATAGTCCTCTGCATTCTT
TCTCAAATCACGCCAAGACCATCACTAGCCTTACAATCGATCGAGAGGGC
TCTCGCCTGCTGTCCTCCTCACTAGATGGGCACGTCAAAGTGTACGACCT
TCAGACGTACGATGTCCTCCACTCTCTCCGGTTCTCCGGACCCCTCCTCA
GCGTCGGTCTCTCCCCCAACAAGGGCAAGCTCATGGTCGGGAAAGCTGAT
GGATGCCTCTCCATTCGCACCCGCCGCGCCGCCACCAGCACGACCTCGTC
CTCCCTCCCTTCCTCGTCCTCTGGTCTTTTCCCCAAAACCAGCACTAATC
CCCTGCTTTTCGGTGGTACGACCAAATATTTCCAACGAGGAAAAAATGCT
GTTGCGTCCACGGGGGATTTTGAGGTGGAGCTGGCGAAGCGTCATCGACT
CGCGCCTTACGACGTAGCCTTGAAGGGATTCAAGTACCATGAGGCTCTGG
ATAGAGCGCTGGAAAGTCGGAATCCGCGTACGATCGTCGCTGTTCTCGAC
GAGCTGGTGATGCGGAGGGGATTGAAGATTTCGCTTACCGGGAGGGATGA
AGCGGGCCTGGAGCCGTTACTGGCTTTCTTGGCACGATATTTGAATCATC
CTGATTTTGCGCTGTCCCTTGGAGAGGCCTGCCATTTTGTACTAGACATG
TACGCACCTATGGTGGGGCAGTCTGCGGTGCTTGACGAGCTAATGGGGAG
GGTGGCCCGGGGGGTTAAGGCTGAAGTTGGAGTGCAGAGGGAGATGCTGG
AGTTGCTGGGAGCGATGGAGATGGTGATGGCGACCCAGATCGAGGGGGGG
GGGGGGGGGGGGGGAGGGAGGGGGGGGGGATGTGGAGTTGTTAGAGGGGG
ATGGAAAGGAGGAGAAGGAGGAGAAGGAGGGGGAGGAGGCCAGTGA back to topCoding sequence (CDS) from alignment at chr9:895913..897608- >NO09G03070.1 ID=NO09G03070.1|Name=NO09G03070.1|organism=Nannochloropsis oceanica|type=CDS|length=1590bp|location=Sequence derived from alignment at chr9:895913..897608- (Nannochloropsis oceanica) ATGGCAGACTACAAAAAAGTACGCCATCGGCAACGGCCTCGACCGGTAGA GCGCCCCAAACCGGACGGCAACTTCTGGGCCAAGTTTATCAAGCCCACCG ACCTCTCCTTCCCCGGCGCCGTCTACGCCTTGGATTTTCACCCTCTGGCC CCGCATGATGCCCTCGTCACAGCCTCGGCACGATTGTCCTTAGTCTCAAT CAGTCGTGGTGCACCCAAAGTCAGCAAGACGTTTTCCCGGCTGAATGGTT TGGCGTACTCCGGAGTCTTCCGTCCAACCGACGGGCGGCTCATAGCGTGT GGAGACGATGGGGGCGTCGTCACTGTCTTTGACGTGGCCACCAAGGCCTC CCTCCGTCAATTTACCACCGCAGCCAATCACCGTGGTACCACAGGCGCAG CTGCTCGTGTTGTGCGCTGGCGAAGGGATGGCCTGGCATTGTTTTCGGGG TCGGATGATAAGTGCGTGCGGTATTGGGACTTGGGGACAGGCCAGCTCTT GACCACAATCCCACAAGCCCATGGGGACTACGTCCGTTGCGGTGCCACTA ACCCTGCAGCAGCCTCGGAGATTCCTGTGGAGGCCTGCGTGGTGCTACCA GGGGGCTCCTTGCTCGTCTCCGCCGGAACAGACACTATCAAAATATGGGA TTTGCTCGGCGGCGGTGGAGAAGGCAATAGTCCTCTGCATTCTTTCTCAA ATCACGCCAAGACCATCACTAGCCTTACAATCGATCGAGAGGGCTCTCGC CTGCTGTCCTCCTCACTAGATGGGCACGTCAAAGTGTACGACCTTCAGAC GTACGATGTCCTCCACTCTCTCCGGTTCTCCGGACCCCTCCTCAGCGTCG GTCTCTCCCCCAACAAGGGCAAGCTCATGGTCGGGAAAGCTGATGGATGC CTCTCCATTCGCACCCGCCGCGCCGCCACCAGCACGACCTCGTCCTCCCT CCCTTCCTCGTCCTCTGGTCTTTTCCCCAAAACCAGCACTAATCCCCTGC TTTTCGGTGGTACGACCAAATATTTCCAACGAGGAAAAAATGCTGTTGCG TCCACGGGGGATTTTGAGGTGGAGCTGGCGAAGCGTCATCGACTCGCGCC TTACGACGTAGCCTTGAAGGGATTCAAGTACCATGAGGCTCTGGATAGAG CGCTGGAAAGTCGGAATCCGCGTACGATCGTCGCTGTTCTCGACGAGCTG GTGATGCGGAGGGGATTGAAGATTTCGCTTACCGGGAGGGATGAAGCGGG CCTGGAGCCGTTACTGGCTTTCTTGGCACGATATTTGAATCATCCTGATT TTGCGCTGTCCCTTGGAGAGGCCTGCCATTTTGTACTAGACATGTACGCA CCTATGGTGGGGCAGTCTGCGGTGCTTGACGAGCTAATGGGGAGGGTGGC CCGGGGGGTTAAGGCTGAAGTTGGAGTGCAGAGGGAGATGCTGGAGTTGC TGGGAGCGATGGAGATGGTGATGGCGACCCAGATCGAGGGGGGGGGGGGG GGGGGGGGAGGGAGGGGGGGGGGATGTGGAGTTGTTAGAGGGGGATGGAA AGGAGGAGAAGGAGGAGAAGGAGGGGGAGGAGGCCAGTGA back to top
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