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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:758738..760355 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G02560.1 vs.
Match: EWM27581.1 (hypothetical protein Naga_100015g23 [Nannochloropsis gaditana]) HSP 1 Score: 493.8 bits (1270), Expect = 4.200e-136 Identity = 262/329 (79.64%), Postives = 287/329 (87.23%), Query Frame = 0
Query: 10 MPYLKSNWSSMPPLEEFGRFAFGEIFTIPEMTLTQEDPTARACYLYVALEHQARVQELDLICAAPTIVVNLMRGKSSTAMSYTYLTTLKGQSSEEYPGLFVFRIDASLLSHVEVWQLQIKFLFPRVGENSLLVKKISVIVEDQAKRRGELNMKAEAGAGRRGVLDRPNSTAIQTFVPPPQQQRQQGYGPPPPPQPFNAESAVMVGLVVVDQVLGVMTKEIQENLQSTCRGVEERLLADLSRLEEKMGRIEEVYDDIAADIRLTSLLSALEGAKIARGMANAEEEERGMEGAAQEGLSEEKGEDVESPTGAWGTPGGLTPDMYYGVGVGV 339
MPYLKSNWSSMPPLEEFGRFAFGEIFTIPEMTLTQ DPTARACYL+VALEHQARVQELDLICAAPTIVVNLMRGKS+T MSYTYLTTLKGQ+SEEYPGLF FRIDASLLSHVEVWQLQIKFLFPRVGE SLL+KK+SVIVEDQAK+RGELNMKAE GAG+RGVLDR NSTAIQ + P QQ++Q Y PP PPQPFNAESAVMVGLVVVDQVLGVMTKEIQ+NL+STCRGVE+RLLADL RLE KM RIEEVYDDIAADIRLTSL SALE A++A+G+A + E++ A +E+G+ P G WGT G L D+YYG+GVGV
Sbjct: 1 MPYLKSNWSSMPPLEEFGRFAFGEIFTIPEMTLTQTDPTARACYLHVALEHQARVQELDLICAAPTIVVNLMRGKSTTGMSYTYLTTLKGQTSEEYPGLFAFRIDASLLSHVEVWQLQIKFLFPRVGEKSLLIKKVSVIVEDQAKKRGELNMKAETGAGKRGVLDRTNSTAIQNYNP---QQQRQYYPPPVPPQPFNAESAVMVGLVVVDQVLGVMTKEIQDNLESTCRGVEKRLLADLKRLEGKMRRIEEVYDDIAADIRLTSLQSALEEARMAQGLAANDPEKKSATDADGGNEDQEEGD----PGGVWGT-GALQQDIYYGIGVGV 321
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G02560.1 ID=NO09G02560.1|Name=NO09G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1618bp GTTTGAATTACGAACCAGCACCCGAAGTCCTTGGCAATCAACCTAGCGCC CACTCGCCTCTCTCTCTCACCACACAGGAAGCAATTGTACCACAAGGTCC TAATCATGATATATTGTGCTGTTCTCTCATGGGAAAGAGACTTTGCTTGA CTGGCATTGCTTGGCAAGTAGTCAAGGAAGCTCTCTCGTCCTGCATGTCG CCATACCCTCGCTCAGGCCACGCTACGCACTGAGCTTCTGCAACTGAACC CACCACACTGTCCTTTCTCACTCACCATCCAACACACAATACATATGAAC ACTCGCAGTGAGGGCGAGGAGATGCCGTACCTCAAGAGCAACTGGTCATC CATGCCTCCTTTGGAGGAGTTTGGGCGCTTCGCGTTTGGGGAAATTTTCA CCATACCAGAAATGACCTTGACACAAGAGGATCCCACGGCCCGGGCCTGC TACTTATACGTGGCCTTAGAGCACCAAGCACGCGTCCAGGAGTTGGATTT AATATGCGCGGCGCCGACCATCGTCGTGAATCTGATGCGGGGCAAATCCT CCACGGCCATGAGCTACACCTACTTGACAACCCTCAAGGGTCAAAGCTCA GAGGAATATCCAGGGCTCTTTGTCTTTCGCATCGACGCATCTCTGTTGTC GCATGTGGAAGTCTGGCAGCTCCAGATCAAATTCTTGTTTCCCCGGGTGG GGGAGAATTCGTTGCTGGTCAAGAAGATAAGTGTAATTGTGGAGGACCAG GCCAAGAGACGGGGGGAGCTCAACATGAAGGCCGAGGCAGGCGCAGGCAG GCGAGGGGTTCTCGACCGCCCCAATTCCACGGCCATTCAGACTTTTGTTC CGCCTCCTCAGCAGCAACGACAGCAGGGCTACGGCCCGCCCCCGCCCCCC CAGCCTTTCAATGCGGAGAGTGCCGTAATGGTGGGGCTGGTGGTGGTGGA CCAAGTTCTGGGTGTCATGACCAAGGAGATCCAGGAGAACCTTCAGTCAA CTTGTAGGGGGGTAGAAGAACGCTTGCTTGCAGATTTAAGCAGGCTAGAG GAGAAGATGGGGCGGATTGAGGAGGTGTATGATGACATTGCTGCGGACAT TCGATTGACCTCGCTGCTGTCGGCATTGGAAGGGGCCAAAATTGCGCGGG GCATGGCAAACGCGGAAGAAGAAGAGAGAGGAATGGAAGGAGCAGCACAG GAGGGATTATCGGAGGAAAAGGGTGAGGACGTAGAGAGCCCAACGGGGGC TTGGGGGACCCCGGGCGGATTGACGCCAGATATGTATTATGGCGTTGGTG TCGGAGTGTAAAGAGATTAAAAAGTGGAGGGGTACTATGAAAGATGCACG AGTATGTGAGTGGAAAAGAGCGAAATATGTGAGAGGAAAAGAGCGATGTG ATGTGAAAGTGATTGAGTGCGGTGAGTCATGCGATGAAGGGGAAGAGAAG TAGGGAAACAGACCAGAGGTGAATCATAATGGCCCTCGTTTCGAGCTCAA ATGGCCACAAAAGAAAGATTCCGAGAGCCTCAACAGCATCAATCGGGAAA GCCGAAAGCAAAACAGAGAGTGGTCGACTAAGATTGATCCAAAGAAAAAA CAAAACATGTCCGTAAGA back to topprotein sequence of NO09G02560.1 >NO09G02560.1-protein ID=NO09G02560.1-protein|Name=NO09G02560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp MNTRSEGEEMPYLKSNWSSMPPLEEFGRFAFGEIFTIPEMTLTQEDPTAR ACYLYVALEHQARVQELDLICAAPTIVVNLMRGKSSTAMSYTYLTTLKGQ SSEEYPGLFVFRIDASLLSHVEVWQLQIKFLFPRVGENSLLVKKISVIVE DQAKRRGELNMKAEAGAGRRGVLDRPNSTAIQTFVPPPQQQRQQGYGPPP PPQPFNAESAVMVGLVVVDQVLGVMTKEIQENLQSTCRGVEERLLADLSR LEEKMGRIEEVYDDIAADIRLTSLLSALEGAKIARGMANAEEEERGMEGA AQEGLSEEKGEDVESPTGAWGTPGGLTPDMYYGVGVGV* back to topmRNA from alignment at chr9:758738..760355+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G02560.1 ID=NO09G02560.1|Name=NO09G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1618bp|location=Sequence derived from alignment at chr9:758738..760355+ (Nannochloropsis oceanica) GTTTGAATTACGAACCAGCACCCGAAGTCCTTGGCAATCAACCTAGCGCC
CACTCGCCTCTCTCTCTCACCACACAGGAAGCAATTGTACCACAAGGTCC
TAATCATGATATATTGTGCTGTTCTCTCATGGGAAAGAGACTTTGCTTGA
CTGGCATTGCTTGGCAAGTAGTCAAGGAAGCTCTCTCGTCCTGCATGTCG
CCATACCCTCGCTCAGGCCACGCTACGCACTGAGCTTCTGCAACTGAACC
CACCACACTGTCCTTTCTCACTCACCATCCAACACACAATACATATGAAC
ACTCGCAGTGAGGGCGAGGAGATGCCGTACCTCAAGAGCAACTGGTCATC
CATGCCTCCTTTGGAGGAGTTTGGGCGCTTCGCGTTTGGGGAAATTTTCA
CCATACCAGAAATGACCTTGACACAAGAGGATCCCACGGCCCGGGCCTGC
TACTTATACGTGGCCTTAGAGCACCAAGCACGCGTCCAGGAGTTGGATTT
AATATGCGCGGCGCCGACCATCGTCGTGAATCTGATGCGGGGCAAATCCT
CCACGGCCATGAGCTACACCTACTTGACAACCCTCAAGGGTCAAAGCTCA
GAGGAATATCCAGGGCTCTTTGTCTTTCGCATCGACGCATCTCTGTTGTC
GCATGTGGAAGTCTGGCAGCTCCAGATCAAATTCTTGTTTCCCCGGGTGG
GGGAGAATTCGTTGCTGGTCAAGAAGATAAGTGTAATTGTGGAGGACCAG
GCCAAGAGACGGGGGGAGCTCAACATGAAGGCCGAGGCAGGCGCAGGCAG
GCGAGGGGTTCTCGACCGCCCCAATTCCACGGCCATTCAGACTTTTGTTC
CGCCTCCTCAGCAGCAACGACAGCAGGGCTACGGCCCGCCCCCGCCCCCC
CAGCCTTTCAATGCGGAGAGTGCCGTAATGGTGGGGCTGGTGGTGGTGGA
CCAAGTTCTGGGTGTCATGACCAAGGAGATCCAGGAGAACCTTCAGTCAA
CTTGTAGGGGGGTAGAAGAACGCTTGCTTGCAGATTTAAGCAGGCTAGAG
GAGAAGATGGGGCGGATTGAGGAGGTGTATGATGACATTGCTGCGGACAT
TCGATTGACCTCGCTGCTGTCGGCATTGGAAGGGGCCAAAATTGCGCGGG
GCATGGCAAACGCGGAAGAAGAAGAGAGAGGAATGGAAGGAGCAGCACAG
GAGGGATTATCGGAGGAAAAGGGTGAGGACGTAGAGAGCCCAACGGGGGC
TTGGGGGACCCCGGGCGGATTGACGCCAGATATGTATTATGGCGTTGGTG
TCGGAGTGTAAAGAGATTAAAAAGTGGAGGGGTACTATGAAAGATGCACG
AGTATGTGAGTGGAAAAGAGCGAAATATGTGAGAGGAAAAGAGCGATGTG
ATGTGAAAGTGATTGAGTGCGGTGAGTCATGCGATGAAGGGGAAGAGAAG
TAGGGAAACAGACCAGAGGTGAATCATAATGGCCCTCGTTTCGAGCTCAA
ATGGCCACAAAAGAAAGATTCCGAGAGCCTCAACAGCATCAATCGGGAAA
GCCGAAAGCAAAACAGAGAGTGGTCGACTAAGATTGATCCAAAGAAAAAA
CAAAACATGTCCGTAAGA back to topCoding sequence (CDS) from alignment at chr9:758738..760355+ >NO09G02560.1 ID=NO09G02560.1|Name=NO09G02560.1|organism=Nannochloropsis oceanica|type=CDS|length=1017bp|location=Sequence derived from alignment at chr9:758738..760355+ (Nannochloropsis oceanica) ATGAACACTCGCAGTGAGGGCGAGGAGATGCCGTACCTCAAGAGCAACTG GTCATCCATGCCTCCTTTGGAGGAGTTTGGGCGCTTCGCGTTTGGGGAAA TTTTCACCATACCAGAAATGACCTTGACACAAGAGGATCCCACGGCCCGG GCCTGCTACTTATACGTGGCCTTAGAGCACCAAGCACGCGTCCAGGAGTT GGATTTAATATGCGCGGCGCCGACCATCGTCGTGAATCTGATGCGGGGCA AATCCTCCACGGCCATGAGCTACACCTACTTGACAACCCTCAAGGGTCAA AGCTCAGAGGAATATCCAGGGCTCTTTGTCTTTCGCATCGACGCATCTCT GTTGTCGCATGTGGAAGTCTGGCAGCTCCAGATCAAATTCTTGTTTCCCC GGGTGGGGGAGAATTCGTTGCTGGTCAAGAAGATAAGTGTAATTGTGGAG GACCAGGCCAAGAGACGGGGGGAGCTCAACATGAAGGCCGAGGCAGGCGC AGGCAGGCGAGGGGTTCTCGACCGCCCCAATTCCACGGCCATTCAGACTT TTGTTCCGCCTCCTCAGCAGCAACGACAGCAGGGCTACGGCCCGCCCCCG CCCCCCCAGCCTTTCAATGCGGAGAGTGCCGTAATGGTGGGGCTGGTGGT GGTGGACCAAGTTCTGGGTGTCATGACCAAGGAGATCCAGGAGAACCTTC AGTCAACTTGTAGGGGGGTAGAAGAACGCTTGCTTGCAGATTTAAGCAGG CTAGAGGAGAAGATGGGGCGGATTGAGGAGGTGTATGATGACATTGCTGC GGACATTCGATTGACCTCGCTGCTGTCGGCATTGGAAGGGGCCAAAATTG CGCGGGGCATGGCAAACGCGGAAGAAGAAGAGAGAGGAATGGAAGGAGCA GCACAGGAGGGATTATCGGAGGAAAAGGGTGAGGACGTAGAGAGCCCAAC GGGGGCTTGGGGGACCCCGGGCGGATTGACGCCAGATATGTATTATGGCG TTGGTGTCGGAGTGTAA back to top
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