|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:741528..743510 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G02480.1 vs.
Match: EWM27542.1 (hypothetical protein Naga_100015g16 [Nannochloropsis gaditana]) HSP 1 Score: 314.7 bits (805), Expect = 2.600e-82 Identity = 143/220 (65.00%), Postives = 166/220 (75.45%), Query Frame = 0
Query: 30 SASSNSRVNFDAQADSNTWCKPADPDMTSWAAPIVKDILELYHCRADDPRVFERYAPDAVFDDPAGTLHGRAAIRVAMEALPKVFSHGEPQNVDITYHPPLVGGERNRFQDGGNGSSTGREQIGPQARITLVQMYEWRRDLLPFGLSPGVFLGHQKDSMVALPTVVYLTFDEQTRLVTRHEDRWWGKDTQSTSFLVGPLHGLVKHLNGRMWAAWGARCYG 250
S S D Q +SNTWCK ADP+M WAAPI+ DILELYHCR DPRV+ RYAPDAVFDDPAG L GR AIRVAMEALPK+F GEP++V ITYH PLVGGERN F++G G+EQ+GPQARI LVQ Y WR+D+LP LSPGV LG + V LPTVV+LTFD +T L+TRHEDRWWGKDT ++S + P+H ++K LNGR W WGARCYG
Sbjct: 30 SFGSTKTAPLDPQIESNTWCKQADPEMAIWAAPIIHDILELYHCRVHDPRVYNRYAPDAVFDDPAGILRGRPAIRVAMEALPKIFRTGEPKDVHITYHAPLVGGERNGFRNG--DEHKGQEQVGPQARIALVQTYVWRQDILPLSLSPGVLLGQGNSTSVELPTVVFLTFDAKTHLITRHEDRWWGKDTTTSSPHLRPVHSIIKQLNGRAWEVWGARCYG 247
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G02480.1 ID=NO09G02480.1|Name=NO09G02480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1309bp CTCGACTCTGGCGAGAGGACAGGTCTGTGTCATTTTCTCCGGGTGTGTAT GTGTTCGTCGACATCCTCGCATTGAGAACGCTAGCGTGGCACATCTAGTG CTGGTGCAAAAGATGAAATATTTCATTGGGAAAGCTCGACACAGCTCATA GCTCGCAGTTTACAGCTCGCATGGTGATTCATAGTTCGTTTTTTCTGCCG TTCCTTCTATAGAACTATCACATGCAACCTGACGTCCTCTAGGACTTGCA TTACGAGGGGGAGCCTTCCAACAATGGAATGTTGCCTATTCACCCCTTAT TTCTTGTCCGAGTTTTTCTAGCGACTTTGACAGTTTTTTCATCGGGCAAA GTTTCCGGACGGCCCACACAGGGCCAGAAGGAGAAGGGTGAGGGGGATAA AAGAGGAGGTCAGCGGGGAGGCTACACATAGAGTGTCCGCATACCCTTTT TGGATGTGGTGTCCAGGCTTCTTGCCTCTTCCCTCCCTTCGAACTCTCCA TCTATCTCGTCGGCTTCGCCCCTTTATGCGGCCCCTCTGCAGTGCCAGCA GCAACAGCAGAGTCAATTTCGACGCCCAGGCCGACAGCAATACATGGTGT AAGCCCGCCGATCCCGACATGACAAGCTGGGCCGCGCCAATTGTCAAAGA TATTTTAGAGCTGTACCACTGCCGAGCCGACGATCCGCGTGTTTTCGAAA GATACGCGCCAGATGCAGTCTTTGACGATCCTGCGGGAACGCTGCATGGA CGCGCGGCTATTCGAGTCGCCATGGAAGCCCTGCCCAAGGTTTTTAGTCA CGGCGAGCCCCAAAATGTCGACATTACATACCATCCACCACTGGTTGGAG GAGAGCGGAATCGTTTCCAAGATGGCGGCAACGGAAGCAGTACGGGGCGA GAGCAGATCGGCCCACAAGCCCGCATCACTCTTGTACAGATGTACGAATG GCGGCGAGATCTGCTTCCTTTTGGCTTGTCGCCGGGCGTCTTTTTGGGTC ATCAAAAAGACTCCATGGTCGCCCTGCCCACCGTGGTATATCTCACTTTT GACGAGCAAACCCGCCTTGTGACCAGGCACGAAGATCGGTGGTGGGGCAA GGACACCCAGAGCACCTCCTTCCTTGTCGGCCCCTTACATGGCCTTGTCA AGCACCTAAATGGGCGGATGTGGGCGGCATGGGGTGCGCGGTGCTATGGT GGTTGATGAGTCCCACGACATGGGCCAGCAATGCAGCCACCCATATCGAA GGGGAAACTATGTTTAATTAATTTGAAACAAAGCAAGACAGATATCAGAT GTTCACGTA back to topprotein sequence of NO09G02480.1 >NO09G02480.1-protein ID=NO09G02480.1-protein|Name=NO09G02480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp MWCPGFLPLPSLRTLHLSRRLRPFMRPLCSASSNSRVNFDAQADSNTWCK PADPDMTSWAAPIVKDILELYHCRADDPRVFERYAPDAVFDDPAGTLHGR AAIRVAMEALPKVFSHGEPQNVDITYHPPLVGGERNRFQDGGNGSSTGRE QIGPQARITLVQMYEWRRDLLPFGLSPGVFLGHQKDSMVALPTVVYLTFD EQTRLVTRHEDRWWGKDTQSTSFLVGPLHGLVKHLNGRMWAAWGARCYGG * back to topmRNA from alignment at chr9:741528..743510+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G02480.1 ID=NO09G02480.1|Name=NO09G02480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1983bp|location=Sequence derived from alignment at chr9:741528..743510+ (Nannochloropsis oceanica) CTCGACTCTGGCGAGAGGACAGGTCTGTGTCATTTTCTCCGGGTGTGTAT
GTGTTCGTCGACATCCTCGCATTGAGAACGCTAGCGTGGCACATCTAGTG
CTGGTGCAAAAGATGAAATATTTCATTGGGAAAGCTCGACACAGCTCATA
GCTCGCAGTTTACAGCTCGCATGGTGATTCATAGTTCGTTTTTTCTGCCG
TTCCTTCTATAGAACTATCACATGCAACCTGACGTCCTCTAGGACTTGCA
TTACGAGGGGGAGCCTTCCAACAATGGAATGTTGCCTATTCACCCCTTAT
TTCTTGTCCGAGTTTTTCTAGCGACTTTGACAGTTTTTTCATCGGGCAAA
GTTTCCGGACGGCCCACACAGGGCCAGAAGGAGAAGGGTGAGGGGGATAA
AAGAGGAGGTCAGCGGGGAGGCTACACATAGAGTGTCCGCATACCCTTTT
TGGATGTGGTGTCCAGGCTTCTTGCCTCTTCCCTCCCTTCGAACTCTCCA
TCTATCTCGTCGGCTTCGCCCCTTTATGCGGCCCCTCTGCAGTGCCAGCA
GCAACAGCAGAGTCAATTTCGACGCCCAGGCCGACAGCAATACATGGTGT
AAGCCCGCCGATCCCGACATGACAAGCTGGGCCGCGCCAATTGTCAAAGA
TGTACGTACCACAAGTAGCAGGGGCCTCTTATTATTTACGGCCTCTTATT
TTTTTCGTTGTTGTTGTCGTTGTAATTGAATAAAGTTGTCAATGAGATCA
GCTCCGGCCGTGATGTGCGTTAATGATATAGCGTTAATTATGTCGGAACA
CCACATTATGTCATCAACTTTTGATGAGTCTCTCCTTCCCGACGTCCGCT
CCCCTCTTCACGACAAAAACCGCAGATTTTAGAGCTGTACCACTGCCGAG
CCGACGATCCGCGTGTTTTCGAAAGATACGCGCCAGATGCAGTCTTTGAC
GATCCTGCGGGAACGCTGCATGGACGCGCGGCTATTCGAGTCGCCATGGA
AGCCCTGGTACGTGTGCGTGGGGTCACCTGCCGGCTGCAGGTGCTCGTAT
TCGTATATGTGTTTCATTTTCACGTTCTTGTGCACGCTTTTTGTAAATAT
TGTAATTACGACAGTGTTAAAGCTATGTGCCTACCTAGATCAGAATTAAA
ATATAGCTGGCGTCGTCCTCTCGTGTAAGCTCGACGGCTCCCGGCACATG
CTGTCACACGCGAAAAAGAAAGTTGAGAGCGAGCATTTTGGTTACTCCCA
CAGCATACTTTACCACCCACCTTTTTACCGCGTTGTTATACCCTCATGAA
ATCCAAGCATGCTGTCGCTCATTCATTCCTACCCCAATCTCTTCCTCTTC
TCGACAAAAAACAGCCCAAGGTTTTTAGTCACGGCGAGCCCCAAAATGTC
GACATTACATACCATCCACCACTGGTTGGAGGAGAGCGGAATCGTTTCCA
AGATGGCGGCAACGGAAGCAGTACGGGGCGAGAGCAGGTTTAAAGGAGGA
AGAAGGGGAAATGGGAAGAGGAAAGAAAAAATAGGCAACACTTCATGATC
ACATAGTCTCCCTTCTTCCATCCTCAATAGATCGGCCCACAAGCCCGCAT
CACTCTTGTACAGATGTACGAATGGCGGCGAGATCTGCTTCCTTTTGGCT
TGTCGCCGGGCGTCTTTTTGGGTCATCAAAAAGACTCCATGGTCGCCCTG
CCCACCGTGGTATATCTCACTTTTGACGAGCAAACCCGCCTTGTGACCAG
GCACGAAGATCGGTGGTGGGGCAAGGACACCCAGAGCACCTCCTTCCTTG
TCGGCCCCTTACATGGCCTTGTCAAGCACCTAAATGGGCGGATGTGGGCG
GCATGGGGTGCGCGGTGCTATGGTGGTTGATGAGTCCCACGACATGGGCC
AGCAATGCAGCCACCCATATCGAAGGGGAAACTATGTTTAATTAATTTGA
AACAAAGCAAGACAGATATCAGATGTTCACGTA back to topCoding sequence (CDS) from alignment at chr9:741528..743510+ >NO09G02480.1 ID=NO09G02480.1|Name=NO09G02480.1|organism=Nannochloropsis oceanica|type=CDS|length=753bp|location=Sequence derived from alignment at chr9:741528..743510+ (Nannochloropsis oceanica) ATGTGGTGTCCAGGCTTCTTGCCTCTTCCCTCCCTTCGAACTCTCCATCT ATCTCGTCGGCTTCGCCCCTTTATGCGGCCCCTCTGCAGTGCCAGCAGCA ACAGCAGAGTCAATTTCGACGCCCAGGCCGACAGCAATACATGGTGTAAG CCCGCCGATCCCGACATGACAAGCTGGGCCGCGCCAATTGTCAAAGATAT TTTAGAGCTGTACCACTGCCGAGCCGACGATCCGCGTGTTTTCGAAAGAT ACGCGCCAGATGCAGTCTTTGACGATCCTGCGGGAACGCTGCATGGACGC GCGGCTATTCGAGTCGCCATGGAAGCCCTGCCCAAGGTTTTTAGTCACGG CGAGCCCCAAAATGTCGACATTACATACCATCCACCACTGGTTGGAGGAG AGCGGAATCGTTTCCAAGATGGCGGCAACGGAAGCAGTACGGGGCGAGAG CAGATCGGCCCACAAGCCCGCATCACTCTTGTACAGATGTACGAATGGCG GCGAGATCTGCTTCCTTTTGGCTTGTCGCCGGGCGTCTTTTTGGGTCATC AAAAAGACTCCATGGTCGCCCTGCCCACCGTGGTATATCTCACTTTTGAC GAGCAAACCCGCCTTGTGACCAGGCACGAAGATCGGTGGTGGGGCAAGGA CACCCAGAGCACCTCCTTCCTTGTCGGCCCCTTACATGGCCTTGTCAAGC ACCTAAATGGGCGGATGTGGGCGGCATGGGGTGCGCGGTGCTATGGTGGT TGA back to top
|