|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:547253..549720 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G01760.2 vs.
Match: EWM27615.1 (dna repair protein rad51 [Nannochloropsis gaditana]) HSP 1 Score: 568.9 bits (1465), Expect = 9.100e-159 Identity = 284/297 (95.62%), Postives = 295/297 (99.33%), Query Frame = 0
Query: 1 MEAGYCTVEAVTHATIRKLTDIKGISDQKALKIKEVAYKLVPMGFLTAAQQLETRKDLIQLSTGSKDLDALLGGGIETGSLTEIFGEFRTGKTQLCHTLCVTSQLPLDQGGGEGKAMYIDTEGTFRPQRLVAIAERFGLDVETVLDNVAFARAHNSEQQMDLLKMASAMMSEDRYALVVVDSATALFRTDYCGRGELSERQMQLAQFLRQLTRMSEEFGVAVVLTNQVVANPDGMSFAKDATKPIGGNIIAHASHTRLRLRKGRGENRICQIYDSPTLPEAETQFSIGATGIDNAKE 298
MEAGYCTVE++THAT+RKLTDIKGISDQKA KIKE+AYKLVPMGFLTAAQQLETRKDLIQLSTGSKDLDALLGGG+ETGSLTEIFGEFRTGKTQLCHTLCVTSQLP+DQGGGEGKAMYIDTEGTFRPQRLVAIAERFGLDV+TVLDNVAFARAHNSEQQMDLLKMASAMMSEDRYALVVVDSATALFRTDYCGRGELSERQMQLAQFLRQLTRMSEEFGVAVVLTNQVVANPDGMSFAKD TKPIGGNIIAHASHTRLRLRKGRGENRICQIYDSPTLPEAETQFSIGA+GI++AK+
Sbjct: 79 MEAGYCTVESITHATLRKLTDIKGISDQKAQKIKEIAYKLVPMGFLTAAQQLETRKDLIQLSTGSKDLDALLGGGVETGSLTEIFGEFRTGKTQLCHTLCVTSQLPMDQGGGEGKAMYIDTEGTFRPQRLVAIAERFGLDVDTVLDNVAFARAHNSEQQMDLLKMASAMMSEDRYALVVVDSATALFRTDYCGRGELSERQMQLAQFLRQLTRMSEEFGVAVVLTNQVVANPDGMSFAKDQTKPIGGNIIAHASHTRLRLRKGRGENRICQIYDSPTLPEAETQFSIGASGIEDAKD 375
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G01760.2 ID=NO09G01760.2|Name=NO09G01760.2|organism=Nannochloropsis oceanica|type=mRNA|length=2148bp AAGTTATGAAAATGAATGAATCCAATCGCCAAGACCATCCCCTGCAACGA CCATCGACGCAATCATAAGCACCTGCAAAGGGACTCCTGGGATAACATGA GTGAAACGGCACGAGGCGTTGTTTAGGTTTGGATGCCTTGTGAGGCGCAA TTGACGGAGACTCGCTTCTCGTCAGCCATACCCAGCATCACATTCGCTCC CGCTATCATTCCCTTTCCCAGCATCACAAGCCGCAAGTCCACTCCCTCCT CCTCATTGCGACCAGAAAGTTCCTGGTCCCTGGATCATCCATGCAGAGGG AGTGGCAGCCTTTTGCCGGTACATACTTTTCAGCCCTCTTCAGTGACGTC ATTTTAAGGCACATCGACATCCCTGCTCCCCGCTCCCTCACACGCACCCC ACAGACACCCACACGCCCATAACTAGCATCAGCAACAGCACCAGCCCAGC AACATTGATATACCATGGCGGCAGCAGCAGCAGAGATGCAGCACGTGGGG CTAGAGCAGCAGCAGGTGGGCGAGCACGAGGTACGTGTGGTAATAAAGGT GAAGCGAGGGTGAGAGGGGAAGAGGATCAATGGGCAGACGCCGCCGGCAG TGAGAGTTGGTATTTCCCTCGTCCTCCCCCTTTTCTTCTCAATTTATGCT TACTGGTTGAATCGTGCCTTAGTAGAGATGTCGCCGCCGCATCCCCCACC TCACCCATCCCTCCCTCTCCTTCCCCTTGCCACCAGGTTATTGTCAACTT CCGGCATATCTCCGAACTTGAGCACCATGGCATCAATCGTACCGACCTGA ACAAGCTCATGGAGGCCGGATATTGCACCGTCGAGGCTGTCACACACGCC ACCATCCGCAAACTAACTGACATCAAGGGCATCTCCGACCAGAAGGCCCT CAAAATCAAAGAAGTCGCCTACAAACTCGTTCCCATGGGATTCCTCACCG CTGCCCAACAGCTCGAAACCCGCAAGGACCTGATTCAGCTCTCGACGGGG TCCAAAGATTTGGATGCTTTGCTGGGCGGAGGGATAGAAACAGGCAGCCT CACGGAGATTTTCGGGGAATTCCGTACGGGCAAGACCCAACTCTGTCACA CCCTCTGTGTGACGAGCCAGTTGCCGCTGGACCAGGGAGGAGGAGAAGGG AAGGCCATGTATATTGACACGGAGGGGACCTTCCGTCCCCAGCGGTTGGT GGCCATTGCCGAGCGTTTCGGCCTGGACGTGGAAACCGTGTTGGACAATG TAGCTTTTGCGCGGGCCCATAATTCGGAGCAGCAAATGGATTTATTGAAG ATGGCGTCGGCCATGATGAGTGAAGACCGGTACGCCCTCGTGGTGGTCGA CAGTGCCACTGCCCTATTCCGTACTGACTACTGCGGCCGCGGGGAGCTGA GCGAGCGCCAGATGCAGCTAGCTCAATTTCTCCGTCAACTGACCCGGATG TCAGAGGAGTTCGGCGTGGCCGTCGTGCTGACCAACCAAGTGGTGGCGAA CCCGGACGGGATGAGTTTTGCCAAGGATGCGACCAAGCCGATTGGGGGCA ATATCATCGCACACGCCAGCCACACGCGGCTGCGGTTGAGGAAGGGGAGG GGGGAGAATCGCATATGCCAGATATATGATTCGCCGACCTTGCCGGAGGC GGAGACGCAGTTTTCGATTGGCGCCACGGGGATTGATAATGCCAAGGAGT AAGAGAGGGAGAGAGAGAGGGTAGGATCGGAAGAAACGGTGTATGCGGGG GGGGGATGAGGAGAGAAGTGAAGAATGAAGGGAAGGTAGGAGAATGGAAA GGAGGTGGAGAAAAGAGGGGAAAGAAACCACAGAAATGCAGAAAGGCAAC CGGCGTGAGAGAAAGCTAGCTAGTGACAGTAAGTGTACAGTAGATAAGGA TGTCAATGCTTGAGGGGGAGGGGGGCAAAGCATGCACCAGGGACTCCGGT AGGGTGTGGAGTGTCACGCTGAGGAGCAGAATGGAACAGTAAGAGGAGGA GGCGGGAGGGAGGGATGGAGGGGTGAGGAAGAATGAGGAGTGTGTGTGTT TGGGAGAGGGCGAGATAAAGTAAGATGCCTAGAGAAAAGAATAAGGAACG ATGTATGTCGGTTCGTTGGGTAGGGGATTGGTTGCGTTGGGGGATGCG back to topprotein sequence of NO09G01760.2 >NO09G01760.2-protein ID=NO09G01760.2-protein|Name=NO09G01760.2|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp MEAGYCTVEAVTHATIRKLTDIKGISDQKALKIKEVAYKLVPMGFLTAAQ QLETRKDLIQLSTGSKDLDALLGGGIETGSLTEIFGEFRTGKTQLCHTLC VTSQLPLDQGGGEGKAMYIDTEGTFRPQRLVAIAERFGLDVETVLDNVAF ARAHNSEQQMDLLKMASAMMSEDRYALVVVDSATALFRTDYCGRGELSER QMQLAQFLRQLTRMSEEFGVAVVLTNQVVANPDGMSFAKDATKPIGGNII AHASHTRLRLRKGRGENRICQIYDSPTLPEAETQFSIGATGIDNAKE* back to topmRNA from alignment at chr9:547253..549720+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G01760.2 ID=NO09G01760.2|Name=NO09G01760.2|organism=Nannochloropsis oceanica|type=mRNA|length=2468bp|location=Sequence derived from alignment at chr9:547253..549720+ (Nannochloropsis oceanica) AAGTTATGAAAATGAATGAATCCAATCGCCAAGACCATCCCCTGCAACGA
CCATCGACGCAATCATAAGCACCTGCAAAGGGACTCCTGGGATAACATGA
GTGAAACGGCACGAGGCGTTGTTTAGGTTTGGATGCCTTGTGAGGCGCAA
TTGACGGAGACTCGCTTCTCGTCAGCCATACCCAGCATCACATTCGCTCC
CGCTATCATTCCCTTTCCCAGCATCACAAGCCGCAAGTCCACTCCCTCCT
CCTCATTGCGACCAGAAAGTTCCTGGTCCCTGGATCATCCATGCAGAGGG
AGTGGCAGCCTTTTGCCGGTACATACTTTTCAGCCCTCTTCAGTGACGTC
ATTTTAAGGCACATCGACATCCCTGCTCCCCGCTCCCTCACACGCACCCC
ACAGACACCCACACGCCCATAACTAGCATCAGCAACAGCACCAGCCCAGC
AACATTGATATACCATGGCGGCAGCAGCAGCAGAGATGCAGCACGTGGGG
CTAGAGCAGCAGCAGGTGGGCGAGCACGAGGTACGTGTGGTAATAAAGGT
GAAGCGAGGGTGAGAGGGGAAGAGGATCAATGGGCAGACGCCGCCGGCAG
TGAGAGTTGGTATTTCCCTCGTCCTCCCCCTTTTCTTCTCAATTTATGCT
TACTGGTTGAATCGTGCCTTAGTAGAGATGTCGCCGCCGCATCCCCCACC
TCACCCATCCCTCCCTCTCCTTCCCCTTGCCACCAGGTTATTGTCAACTT
CCGGCATATCTCCGAACTTGAGCACCATGGCATCAATCGTACCGACCTGA
ACAAGCTCATGGAGGCCGGATATTGCACCGTCGAGGCTGTCACACACGCC
ACCATCCGCAAACTAACTGACATCAAGGTAAGGTAGTAGAGTAGGGGAAG
AGAAGGGGGAGTCAGTCCTCTTCACGCTCATTCGTCCGTGCTTCTTCTGC
TACTCATGTCAGGCTAACTTTTTTTCCACACTGTCCTCCTCCTTCCCATT
TCTTTTTCTCTCTTTCTCACCCTACTTCTCCTTTTCCCCAGGGCATCTCC
GACCAGAAGGCCCTCAAAATCAAAGAAGTCGCCTACAAACTCGTTCCCAT
GGGATTCCTCACCGCTGCCCAACAGCTCGAAACCCGCAAGGACCTGATTC
AGCTCTCGACGGGGTCCAAAGATTTGGATGCTTTGCTGGGCGGAGGGATA
GAAACAGGCAGCCTCACGGAGATTTTCGGGGAATTCCGTACGGGCAAGAC
CCAACTCTGTCACACCCTCTGTGTGACGAGCCAGTTGCCGCTGGACCAGG
GAGGAGGAGAAGGGAAGGCCATGTATATTGACACGGAGGGGACCTTCCGT
CCCCAGCGGTTGGTGGCCATTGCCGAGCGTTTCGGCCTGGACGTGGAAAC
CGTGTTGGACAATGTAGCTTTTGCGCGGGCCCATAATTCGGAGCAGCAAA
TGGATTTATTGAAGATGGCGTCGGCCATGATGAGGTACGTCCGATGCCCT
CCTCTCTTCCTTCCTCCCTCCTTTGTCCCCCTTCCTCCGCTTCTGCGCTT
TCTGTCGGGGAGCCAACAAAAGGCAGGTGCAGTTCGCTCACTCCCTCTCT
CCCTCCTTTCCTCCCTCCCTCCTTCCTTCATTCCCCACAGTGAAGACCGG
TACGCCCTCGTGGTGGTCGACAGTGCCACTGCCCTATTCCGTACTGACTA
CTGCGGCCGCGGGGAGCTGAGCGAGCGCCAGATGCAGCTAGCTCAATTTC
TCCGTCAACTGACCCGGATGTCAGAGGAGTTCGGCGTGGCCGTCGTGCTG
ACCAACCAAGTGGTGGCGAACCCGGACGGGATGAGTTTTGCCAAGGATGC
GACCAAGCCGATTGGGGGCAATATCATCGCACACGCCAGCCACACGCGGC
TGCGGTTGAGGAAGGGGAGGGGGGAGAATCGCATATGCCAGATATATGAT
TCGCCGACCTTGCCGGAGGCGGAGACGCAGTTTTCGATTGGCGCCACGGG
GATTGATAATGCCAAGGAGTAAGAGAGGGAGAGAGAGAGGGTAGGATCGG
AAGAAACGGTGTATGCGGGGGGGGGATGAGGAGAGAAGTGAAGAATGAAG
GGAAGGTAGGAGAATGGAAAGGAGGTGGAGAAAAGAGGGGAAAGAAACCA
CAGAAATGCAGAAAGGCAACCGGCGTGAGAGAAAGCTAGCTAGTGACAGT
AAGTGTACAGTAGATAAGGATGTCAATGCTTGAGGGGGAGGGGGGCAAAG
CATGCACCAGGGACTCCGGTAGGGTGTGGAGTGTCACGCTGAGGAGCAGA
ATGGAACAGTAAGAGGAGGAGGCGGGAGGGAGGGATGGAGGGGTGAGGAA
GAATGAGGAGTGTGTGTGTTTGGGAGAGGGCGAGATAAAGTAAGATGCCT
AGAGAAAAGAATAAGGAACGATGTATGTCGGTTCGTTGGGTAGGGGATTG
GTTGCGTTGGGGGATGCG back to topCoding sequence (CDS) from alignment at chr9:547253..549720+ >NO09G01760.2 ID=NO09G01760.2|Name=NO09G01760.2|organism=Nannochloropsis oceanica|type=CDS|length=894bp|location=Sequence derived from alignment at chr9:547253..549720+ (Nannochloropsis oceanica) ATGGAGGCCGGATATTGCACCGTCGAGGCTGTCACACACGCCACCATCCG CAAACTAACTGACATCAAGGGCATCTCCGACCAGAAGGCCCTCAAAATCA AAGAAGTCGCCTACAAACTCGTTCCCATGGGATTCCTCACCGCTGCCCAA CAGCTCGAAACCCGCAAGGACCTGATTCAGCTCTCGACGGGGTCCAAAGA TTTGGATGCTTTGCTGGGCGGAGGGATAGAAACAGGCAGCCTCACGGAGA TTTTCGGGGAATTCCGTACGGGCAAGACCCAACTCTGTCACACCCTCTGT GTGACGAGCCAGTTGCCGCTGGACCAGGGAGGAGGAGAAGGGAAGGCCAT GTATATTGACACGGAGGGGACCTTCCGTCCCCAGCGGTTGGTGGCCATTG CCGAGCGTTTCGGCCTGGACGTGGAAACCGTGTTGGACAATGTAGCTTTT GCGCGGGCCCATAATTCGGAGCAGCAAATGGATTTATTGAAGATGGCGTC GGCCATGATGAGTGAAGACCGGTACGCCCTCGTGGTGGTCGACAGTGCCA CTGCCCTATTCCGTACTGACTACTGCGGCCGCGGGGAGCTGAGCGAGCGC CAGATGCAGCTAGCTCAATTTCTCCGTCAACTGACCCGGATGTCAGAGGA GTTCGGCGTGGCCGTCGTGCTGACCAACCAAGTGGTGGCGAACCCGGACG GGATGAGTTTTGCCAAGGATGCGACCAAGCCGATTGGGGGCAATATCATC GCACACGCCAGCCACACGCGGCTGCGGTTGAGGAAGGGGAGGGGGGAGAA TCGCATATGCCAGATATATGATTCGCCGACCTTGCCGGAGGCGGAGACGC AGTTTTCGATTGGCGCCACGGGGATTGATAATGCCAAGGAGTAA back to top
|