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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:196449..198252 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G00460.1 vs.
Match: CBJ25720.1 (Coatomer protein complex,delta sub-unit [Ectocarpus siliculosus]) HSP 1 Score: 551.6 bits (1420), Expect = 2.800e-153 Identity = 320/569 (56.24%), Postives = 409/569 (71.88%), Query Frame = 0
Query: 2 VVLSGAICTKNGKALLSRQFVEMSRIRIEGLLAAFPKLLGSGEEKQHTFIETETVRYVYQPIENLFLLLITNKASNIVEDLETLRLLSKIVPEVAGGVSEERVIDKCFELVFAFDEVLTTGGYRESVSLQQIKTNMEMDSHEEKLALMIKQSKMDSAKDQAARQAKAIRERQRELARDRLGGARGGAGGAYQGIGGGDGG------------GDY-MGRDGVGGFGGVPGGGFGASTGVSSSSYMPGTVDSNSASILETAPTKIASKGMKLGAPSKASTMLDSLVQEDNLSHIATTTAIAPTSTRGGAGG-EAAVPAPVI--QHQPIQLVVEEKIIAHLTRDGAVDAFEVKGSLTLTATTEAAARSKVVLGEGAGGGIVPVGLNFQTHPKVNKQEYDSSKVLVLKDTNKGFPVGRPVGVLRWSYSSTDESMVPLTLNCWPEEEGQGKMNISIEYQMNGQNRELHDVNISIPLGTAEPPQVAAVDGTFRHDPREQRLVWHMDLVDSSNASGALEFVVAGRDAGAFFPIIVSFASQMLYADVAVSAVTGLENAAPVPYSLSKSLTPDSYIV 555
VVLS +I T+NGKALL+RQFV+MSRIRIEGLLAAFPKL+G+G KQHTFIETETVRYVYQPIENLFLLL+TNKASNIVEDLETLR+LSK+VP+VAGGV+E++V+ K FELVFAFDEV+TTGG++E+++LQQIKTNMEMDSHEE+L MI+ SK ++AK++A R+AK +RE+ +E RG G G+GGG GG DY + G GFGG GGG GAS G+S + P AS A T+++++GMKLG SK+ MLDSL++ED+L I P++++ AGG EAAVPA V+ P+ L VEE++ LTR+G +++ EVKG+L+LTA ++ A + KVVL G FQTHPKVNK YDS+K L KD KGFPV RPVGVLRWS ++TDES +PLT+NCWPE EG G+MN+S+EY++ + ELHDV ISIPLG++ P++AA+DG+ RH +E L+W MDL+D SN +G+LEF +A RDA AFFPI V+FAS L+ DV V+ VT E +P+ Y + SLT DSY V
Sbjct: 16 VVLSASITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGN-KQHTFIETETVRYVYQPIENLFLLLVTNKASNIVEDLETLRMLSKVVPDVAGGVTEDKVMSKSFELVFAFDEVITTGGHKENITLQQIKTNMEMDSHEERLHTMIQDSKREAAKEEADRRAKELREKAKEAQ------LRGSGMGGMSGMGGGGGGMGMSGSSMYTEASDYGVASTGGTGFGG-GGGGSGASLGLSVPAAGP-------ASSTPVADTRVSTQGMKLGGASKSKNMLDSLIKEDHLVSI-------PSASKASAGGTEAAVPAAVVAASVHPVSLSVEERLSCQLTREGTLESMEVKGTLSLTANSDGANKCKVVLASTDPSGT----FTFQTHPKVNKGMYDSAKTLASKDQAKGFPVARPVGVLRWSLNTTDESQMPLTINCWPEPEGGGQMNVSMEYEL-VRPMELHDVRISIPLGSSAVPEIAAIDGSHRHLTQEGTLLWTMDLLDQSNRTGSLEFNIASRDAEAFFPITVTFASNQLFCDVQVAGVTNTETESPIQYGYTASLTADSYTV 557
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G00460.1 ID=NO09G00460.1|Name=NO09G00460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1668bp ATGGTGGTGCTTTCCGGTGCAATCTGCACCAAAAATGGCAAGGCACTGCT TTCCCGACAATTTGTGGAGATGAGCCGCATCCGCATCGAGGGATTGTTGG CCGCCTTCCCCAAGCTGCTGGGCTCGGGGGAAGAGAAGCAGCACACTTTT ATCGAGACCGAGACTGTCCGCTACGTCTACCAGCCTATCGAAAACCTTTT CCTGCTCCTAATAACCAACAAGGCCTCCAACATCGTCGAAGACTTAGAGA CCCTCCGTCTGTTGTCCAAGATTGTCCCCGAGGTGGCGGGGGGCGTATCC GAAGAACGGGTAATCGACAAGTGCTTCGAGCTCGTCTTCGCCTTTGACGA GGTCCTAACGACGGGCGGATACCGCGAAAGCGTATCCCTGCAACAAATTA AGACTAACATGGAGATGGACTCGCATGAGGAAAAACTTGCATTGATGATC AAGCAGAGCAAGATGGACTCAGCCAAGGACCAGGCCGCTCGTCAGGCCAA GGCCATCCGGGAACGTCAACGCGAGCTGGCCCGTGACCGGCTGGGGGGGG CCCGAGGTGGCGCGGGGGGGGCTTACCAGGGCATTGGCGGCGGCGATGGT GGTGGTGATTACATGGGTAGGGACGGCGTAGGAGGGTTTGGAGGGGTGCC GGGGGGAGGGTTCGGGGCTTCGACCGGTGTGTCGTCGTCCTCGTATATGC CCGGCACGGTGGACAGCAACTCGGCGTCCATATTGGAAACGGCCCCGACA AAGATTGCGAGCAAGGGGATGAAGCTTGGGGCGCCGAGCAAGGCCTCGAC GATGCTTGACTCGCTTGTACAGGAGGATAATTTGAGTCATATTGCTACTA CCACTGCGATTGCCCCCACTAGCACAAGGGGAGGGGCAGGTGGGGAGGCT GCGGTTCCAGCCCCTGTCATCCAGCACCAGCCCATTCAGTTGGTAGTGGA AGAGAAGATCATCGCGCACCTGACGCGGGATGGGGCGGTGGATGCCTTTG AAGTTAAGGGGTCCTTGACGCTAACAGCGACCACCGAGGCGGCAGCTCGG TCGAAGGTGGTGCTCGGGGAGGGCGCGGGGGGAGGCATTGTGCCGGTGGG TTTGAATTTTCAGACCCACCCGAAGGTAAATAAGCAGGAGTATGACTCTA GCAAGGTTTTGGTGCTGAAAGATACGAATAAGGGCTTTCCTGTCGGGCGC CCTGTTGGGGTCCTCCGGTGGAGCTACTCGTCCACAGATGAGAGCATGGT GCCACTTACGCTCAACTGCTGGCCAGAAGAGGAAGGGCAGGGGAAGATGA ACATTAGCATTGAATATCAGATGAATGGTCAGAACCGGGAATTGCACGAT GTGAATATTTCGATCCCCTTGGGGACGGCCGAGCCTCCGCAAGTGGCGGC GGTGGACGGTACTTTCAGGCATGACCCGCGGGAGCAGCGGCTGGTCTGGC ACATGGATTTGGTCGATTCTTCCAACGCGAGTGGGGCGTTGGAATTTGTA GTGGCGGGGAGGGATGCAGGGGCTTTCTTTCCGATCATCGTCTCGTTTGC GAGTCAAATGCTGTATGCCGATGTGGCGGTGTCGGCAGTTACCGGATTGG AGAATGCCGCCCCAGTTCCCTACAGTCTGTCCAAGAGCCTGACGCCTGAT TCGTACATCGTGGGCTAG back to topprotein sequence of NO09G00460.1 >NO09G00460.1-protein ID=NO09G00460.1-protein|Name=NO09G00460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=556bp MVVLSGAICTKNGKALLSRQFVEMSRIRIEGLLAAFPKLLGSGEEKQHTF IETETVRYVYQPIENLFLLLITNKASNIVEDLETLRLLSKIVPEVAGGVS EERVIDKCFELVFAFDEVLTTGGYRESVSLQQIKTNMEMDSHEEKLALMI KQSKMDSAKDQAARQAKAIRERQRELARDRLGGARGGAGGAYQGIGGGDG GGDYMGRDGVGGFGGVPGGGFGASTGVSSSSYMPGTVDSNSASILETAPT KIASKGMKLGAPSKASTMLDSLVQEDNLSHIATTTAIAPTSTRGGAGGEA AVPAPVIQHQPIQLVVEEKIIAHLTRDGAVDAFEVKGSLTLTATTEAAAR SKVVLGEGAGGGIVPVGLNFQTHPKVNKQEYDSSKVLVLKDTNKGFPVGR PVGVLRWSYSSTDESMVPLTLNCWPEEEGQGKMNISIEYQMNGQNRELHD VNISIPLGTAEPPQVAAVDGTFRHDPREQRLVWHMDLVDSSNASGALEFV VAGRDAGAFFPIIVSFASQMLYADVAVSAVTGLENAAPVPYSLSKSLTPD SYIVG* back to topmRNA from alignment at chr9:196449..198252- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G00460.1 ID=NO09G00460.1|Name=NO09G00460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1804bp|location=Sequence derived from alignment at chr9:196449..198252- (Nannochloropsis oceanica) ATGGTATGTATCACAATTTAGAGGCGGACGAGGGCTACTGTTTATCGGGT
CCGTTTCTGTACGCCTTTGAAGCGTTGCAATAGCATTCCCGTCATTGACC
TCGATGCTTCGGATAACACTCCTTCCCCTCCCCTCACAGGTGGTGCTTTC
CGGTGCAATCTGCACCAAAAATGGCAAGGCACTGCTTTCCCGACAATTTG
TGGAGATGAGCCGCATCCGCATCGAGGGATTGTTGGCCGCCTTCCCCAAG
CTGCTGGGCTCGGGGGAAGAGAAGCAGCACACTTTTATCGAGACCGAGAC
TGTCCGCTACGTCTACCAGCCTATCGAAAACCTTTTCCTGCTCCTAATAA
CCAACAAGGCCTCCAACATCGTCGAAGACTTAGAGACCCTCCGTCTGTTG
TCCAAGATTGTCCCCGAGGTGGCGGGGGGCGTATCCGAAGAACGGGTAAT
CGACAAGTGCTTCGAGCTCGTCTTCGCCTTTGACGAGGTCCTAACGACGG
GCGGATACCGCGAAAGCGTATCCCTGCAACAAATTAAGACTAACATGGAG
ATGGACTCGCATGAGGAAAAACTTGCATTGATGATCAAGCAGAGCAAGAT
GGACTCAGCCAAGGACCAGGCCGCTCGTCAGGCCAAGGCCATCCGGGAAC
GTCAACGCGAGCTGGCCCGTGACCGGCTGGGGGGGGCCCGAGGTGGCGCG
GGGGGGGCTTACCAGGGCATTGGCGGCGGCGATGGTGGTGGTGATTACAT
GGGTAGGGACGGCGTAGGAGGGTTTGGAGGGGTGCCGGGGGGAGGGTTCG
GGGCTTCGACCGGTGTGTCGTCGTCCTCGTATATGCCCGGCACGGTGGAC
AGCAACTCGGCGTCCATATTGGAAACGGCCCCGACAAAGATTGCGAGCAA
GGGGATGAAGCTTGGGGCGCCGAGCAAGGCCTCGACGATGCTTGACTCGC
TTGTACAGGAGGATAATTTGAGTCATATTGCTACTACCACTGCGATTGCC
CCCACTAGCACAAGGGGAGGGGCAGGTGGGGAGGCTGCGGTTCCAGCCCC
TGTCATCCAGCACCAGCCCATTCAGTTGGTAGTGGAAGAGAAGATCATCG
CGCACCTGACGCGGGATGGGGCGGTGGATGCCTTTGAAGTTAAGGGGTCC
TTGACGCTAACAGCGACCACCGAGGCGGCAGCTCGGTCGAAGGTGGTGCT
CGGGGAGGGCGCGGGGGGAGGCATTGTGCCGGTGGGTTTGAATTTTCAGA
CCCACCCGAAGGTAAATAAGCAGGAGTATGACTCTAGCAAGGTTTTGGTG
CTGAAAGATACGAATAAGGGCTTTCCTGTCGGGCGCCCTGTTGGGGTCCT
CCGGTGGAGCTACTCGTCCACAGATGAGAGCATGGTGCCACTTACGCTCA
ACTGCTGGCCAGAAGAGGAAGGGCAGGGGAAGATGAACATTAGCATTGAA
TATCAGATGAATGGTCAGAACCGGGAATTGCACGATGTGAATATTTCGAT
CCCCTTGGGGACGGCCGAGCCTCCGCAAGTGGCGGCGGTGGACGGTACTT
TCAGGCATGACCCGCGGGAGCAGCGGCTGGTCTGGCACATGGATTTGGTC
GATTCTTCCAACGCGAGTGGGGCGTTGGAATTTGTAGTGGCGGGGAGGGA
TGCAGGGGCTTTCTTTCCGATCATCGTCTCGTTTGCGAGTCAAATGCTGT
ATGCCGATGTGGCGGTGTCGGCAGTTACCGGATTGGAGAATGCCGCCCCA
GTTCCCTACAGTCTGTCCAAGAGCCTGACGCCTGATTCGTACATCGTGGG
CTAG back to topCoding sequence (CDS) from alignment at chr9:196449..198252- >NO09G00460.1 ID=NO09G00460.1|Name=NO09G00460.1|organism=Nannochloropsis oceanica|type=CDS|length=1668bp|location=Sequence derived from alignment at chr9:196449..198252- (Nannochloropsis oceanica) ATGGTGGTGCTTTCCGGTGCAATCTGCACCAAAAATGGCAAGGCACTGCT TTCCCGACAATTTGTGGAGATGAGCCGCATCCGCATCGAGGGATTGTTGG CCGCCTTCCCCAAGCTGCTGGGCTCGGGGGAAGAGAAGCAGCACACTTTT ATCGAGACCGAGACTGTCCGCTACGTCTACCAGCCTATCGAAAACCTTTT CCTGCTCCTAATAACCAACAAGGCCTCCAACATCGTCGAAGACTTAGAGA CCCTCCGTCTGTTGTCCAAGATTGTCCCCGAGGTGGCGGGGGGCGTATCC GAAGAACGGGTAATCGACAAGTGCTTCGAGCTCGTCTTCGCCTTTGACGA GGTCCTAACGACGGGCGGATACCGCGAAAGCGTATCCCTGCAACAAATTA AGACTAACATGGAGATGGACTCGCATGAGGAAAAACTTGCATTGATGATC AAGCAGAGCAAGATGGACTCAGCCAAGGACCAGGCCGCTCGTCAGGCCAA GGCCATCCGGGAACGTCAACGCGAGCTGGCCCGTGACCGGCTGGGGGGGG CCCGAGGTGGCGCGGGGGGGGCTTACCAGGGCATTGGCGGCGGCGATGGT GGTGGTGATTACATGGGTAGGGACGGCGTAGGAGGGTTTGGAGGGGTGCC GGGGGGAGGGTTCGGGGCTTCGACCGGTGTGTCGTCGTCCTCGTATATGC CCGGCACGGTGGACAGCAACTCGGCGTCCATATTGGAAACGGCCCCGACA AAGATTGCGAGCAAGGGGATGAAGCTTGGGGCGCCGAGCAAGGCCTCGAC GATGCTTGACTCGCTTGTACAGGAGGATAATTTGAGTCATATTGCTACTA CCACTGCGATTGCCCCCACTAGCACAAGGGGAGGGGCAGGTGGGGAGGCT GCGGTTCCAGCCCCTGTCATCCAGCACCAGCCCATTCAGTTGGTAGTGGA AGAGAAGATCATCGCGCACCTGACGCGGGATGGGGCGGTGGATGCCTTTG AAGTTAAGGGGTCCTTGACGCTAACAGCGACCACCGAGGCGGCAGCTCGG TCGAAGGTGGTGCTCGGGGAGGGCGCGGGGGGAGGCATTGTGCCGGTGGG TTTGAATTTTCAGACCCACCCGAAGGTAAATAAGCAGGAGTATGACTCTA GCAAGGTTTTGGTGCTGAAAGATACGAATAAGGGCTTTCCTGTCGGGCGC CCTGTTGGGGTCCTCCGGTGGAGCTACTCGTCCACAGATGAGAGCATGGT GCCACTTACGCTCAACTGCTGGCCAGAAGAGGAAGGGCAGGGGAAGATGA ACATTAGCATTGAATATCAGATGAATGGTCAGAACCGGGAATTGCACGAT GTGAATATTTCGATCCCCTTGGGGACGGCCGAGCCTCCGCAAGTGGCGGC GGTGGACGGTACTTTCAGGCATGACCCGCGGGAGCAGCGGCTGGTCTGGC ACATGGATTTGGTCGATTCTTCCAACGCGAGTGGGGCGTTGGAATTTGTA GTGGCGGGGAGGGATGCAGGGGCTTTCTTTCCGATCATCGTCTCGTTTGC GAGTCAAATGCTGTATGCCGATGTGGCGGTGTCGGCAGTTACCGGATTGG AGAATGCCGCCCCAGTTCCCTACAGTCTGTCCAAGAGCCTGACGCCTGAT TCGTACATCGTGGGCTAG back to top
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