|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:1263734..1265623 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G04320.1 vs.
Match: EWM26912.1 (hypothetical protein Naga_100103g6 [Nannochloropsis gaditana]) HSP 1 Score: 77.8 bits (190), Expect = 7.100e-11 Identity = 95/317 (29.97%), Postives = 152/317 (47.95%), Query Frame = 0
Query: 16 LLFFLVLLPPQAIVLAFFAHPPPTFIPVWYAPQQQLQQLQHTHTCLWFAAIMSTSDTTHDLPLLDDVRRMHPRELCKLLTENKEDLERLHTVGLMLTEEISRLRNQVWMEQLSRKVTVSRAHAMATKWQVKAVREETKALSTEIRIERLKNRVRFLETTNKDLVEELGWIGGGRGEDEKGGGRSGWAAVRDEEEREGDVDDFLKEKDEDESIVEEEDKDELEEEDDDQLVTEEEEEDELEAEALTDLDPEMEGEEEVGAVARGVEMQAEGLIPNVAEEEAVIKEEGNTAPEGACYPGMEHTDHILENLERLAQKLEE 333
L+ F V LP + + +AF + P L Q T A +TS LPL D+ MHP+E+ KL+ +N+ + +RL+ + +MLT EI RLR+QV ME+ SRKV +SR HA A KWQ + ++ K LS E++I + ++ L+ N+ L+EE EK D ++R GD+ K + E + ++ + DE+ +++D E++ +E + E + E E+++ +G ++ + IPN+ + D IL NLERLAQKLEE
Sbjct: 12 LVTFSVCLPSKILHMAFLSQMP-------------LSTAQRTRPFPKLAR--NTSIGPSGLPLFKDIESMHPKEIYKLVMDNEYNKDRLYIIAMMLTGEIIRLRDQVRMEKSSRKVDISRGHATAMKWQTEVAHQKIKILSQEVKIGNFETQISMLKMANQALIEEF-------TSFEKDIKEIVERKDEDLKKRRGDMPANKKGEALLEDLEKDYNHDEVGNDEEDGHNDEDKGNEEGKGEGGDRNEREKRREKDI----KGGDIWKK--IPNIEK------------------------DPILTNLERLAQKLEE 276
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G04320.1 ID=NO08G04320.1|Name=NO08G04320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1890bp TAAGAAGCATCTTTTTCTATGAGGGTTTTAGACGACTTTATGGACCCTAA GGCTATATTCAGTCTACTTATGGACGATCGCTTGTTTCTAGAGGTGGAGT ATGCAGATGTTTCGCAGTCAGCTGCTGTCATAAGCTAAAGAAGGAGAGCA ACGTTCGAACGTCTCAAATCACACGAGGAAGCTGTGGGGAGGTCGTGTGC ATCATCAGCGAAACAGAACATTTGGGTTAGTAATGTGACAATAATTTGCA AAATTTGCAAGTGACATATAGATCCTTTCACATAAGTGGCACCTTTGTCG ACATCCACCTCCCGACAGGATGCACCGCAACTGTCTTTACCACGCCATTC CTTCTGGCTGGCTGCTGCTCTTTTTCCTGGTCTTGCTCCCACCCCAGGCA ATCGTCTTGGCCTTTTTCGCACACCCTCCACCCACCTTCATCCCTGTTTG GTACGCGCCGCAGCAGCAACTGCAGCAGCTGCAGCATACACATACATGCC TATGGTTTGCAGCTATAATGTCGACTTCGGACACCACCCACGACCTCCCC CTTCTCGATGATGTCCGCCGCATGCATCCGCGGGAGCTCTGTAAGCTGCT GACGGAAAACAAAGAGGATCTAGAACGCCTGCATACTGTGGGGTTGATGC TTACGGAAGAAATTTCCCGTCTTCGGAACCAGGTGTGGATGGAGCAACTG TCACGCAAAGTGACCGTCTCTCGGGCACATGCTATGGCGACGAAATGGCA AGTCAAGGCGGTGCGGGAGGAGACCAAGGCCTTATCGACCGAAATCAGGA TAGAGAGACTGAAAAACCGCGTTCGTTTTCTCGAAACCACCAATAAGGAC TTGGTTGAGGAGCTTGGGTGGATCGGAGGGGGGAGGGGAGAAGATGAAAA GGGAGGGGGAAGGAGTGGATGGGCGGCAGTACGCGACGAAGAGGAGAGAG AAGGGGACGTGGACGACTTTCTAAAAGAGAAAGATGAGGATGAATCCATT GTAGAGGAAGAAGACAAAGATGAGCTGGAAGAAGAGGACGATGATCAGTT AGTCACTGAAGAGGAAGAGGAGGACGAGTTGGAGGCAGAGGCATTGACCG ATCTGGATCCGGAGATGGAGGGCGAGGAGGAGGTGGGCGCCGTGGCGAGG GGAGTTGAGATGCAGGCTGAGGGTTTGATTCCGAACGTAGCGGAAGAGGA AGCAGTCATAAAGGAAGAAGGAAATACTGCACCAGAGGGAGCATGCTATC CAGGGATGGAGCACACGGACCATATTCTGGAGAATCTGGAGCGTCTGGCG CAAAAGCTGGAGGAGTAAGGGCGGAAGCGGGAAAGAATTGGGGACGAGAG GGAACGGCCAGGGAAGCAGGAGGTATACTAAGACAGAAGCATCACAACAA GCAAATAATCAAAATAACGCTTAATATTCAAGAAGCGGGCGTTTTCAAAG ACAGAGCAGACTCCGCAGCCTCCGAGTCGATTTTTTCCTTCTTGTTCCCT TCCCTTGCTATAGAATCTTCTAGTAAGCGCTTCAGATCTCCGGCTACGTC TCCGTCATCAAAGGGCGTCGTGCATCTCTGATGCTTTTCGTCTCCCTACA ATTAACAAGCACCTCTCATCCTTTTGGTCCACACCTGCATCCTTTCAATC GATACCATAGAGTCTCCGCTCCAGCACCTTCTCCTCCCTTCGTGCTCGCC ATCTTCTCCTCCTGATTCTTGAATCGAGTCATAAGAGAGGACAGATGAAA GAAAAGTTTAAAGCACGGAGCCCAAAGCCTATGACTAGAAGCGGAAATAA CAAGGGACAAAATGAGGGAGAAAGAGAGACCAAGGCCCAAATGTGCAAAA TTCAATTTAACACTAAATCAAATACAAAGCCAATAACGAT back to topprotein sequence of NO08G04320.1 >NO08G04320.1-protein ID=NO08G04320.1-protein|Name=NO08G04320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp MHRNCLYHAIPSGWLLLFFLVLLPPQAIVLAFFAHPPPTFIPVWYAPQQQ LQQLQHTHTCLWFAAIMSTSDTTHDLPLLDDVRRMHPRELCKLLTENKED LERLHTVGLMLTEEISRLRNQVWMEQLSRKVTVSRAHAMATKWQVKAVRE ETKALSTEIRIERLKNRVRFLETTNKDLVEELGWIGGGRGEDEKGGGRSG WAAVRDEEEREGDVDDFLKEKDEDESIVEEEDKDELEEEDDDQLVTEEEE EDELEAEALTDLDPEMEGEEEVGAVARGVEMQAEGLIPNVAEEEAVIKEE GNTAPEGACYPGMEHTDHILENLERLAQKLEE* back to topmRNA from alignment at chr8:1263734..1265623- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G04320.1 ID=NO08G04320.1|Name=NO08G04320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1890bp|location=Sequence derived from alignment at chr8:1263734..1265623- (Nannochloropsis oceanica) TAAGAAGCATCTTTTTCTATGAGGGTTTTAGACGACTTTATGGACCCTAA
GGCTATATTCAGTCTACTTATGGACGATCGCTTGTTTCTAGAGGTGGAGT
ATGCAGATGTTTCGCAGTCAGCTGCTGTCATAAGCTAAAGAAGGAGAGCA
ACGTTCGAACGTCTCAAATCACACGAGGAAGCTGTGGGGAGGTCGTGTGC
ATCATCAGCGAAACAGAACATTTGGGTTAGTAATGTGACAATAATTTGCA
AAATTTGCAAGTGACATATAGATCCTTTCACATAAGTGGCACCTTTGTCG
ACATCCACCTCCCGACAGGATGCACCGCAACTGTCTTTACCACGCCATTC
CTTCTGGCTGGCTGCTGCTCTTTTTCCTGGTCTTGCTCCCACCCCAGGCA
ATCGTCTTGGCCTTTTTCGCACACCCTCCACCCACCTTCATCCCTGTTTG
GTACGCGCCGCAGCAGCAACTGCAGCAGCTGCAGCATACACATACATGCC
TATGGTTTGCAGCTATAATGTCGACTTCGGACACCACCCACGACCTCCCC
CTTCTCGATGATGTCCGCCGCATGCATCCGCGGGAGCTCTGTAAGCTGCT
GACGGAAAACAAAGAGGATCTAGAACGCCTGCATACTGTGGGGTTGATGC
TTACGGAAGAAATTTCCCGTCTTCGGAACCAGGTGTGGATGGAGCAACTG
TCACGCAAAGTGACCGTCTCTCGGGCACATGCTATGGCGACGAAATGGCA
AGTCAAGGCGGTGCGGGAGGAGACCAAGGCCTTATCGACCGAAATCAGGA
TAGAGAGACTGAAAAACCGCGTTCGTTTTCTCGAAACCACCAATAAGGAC
TTGGTTGAGGAGCTTGGGTGGATCGGAGGGGGGAGGGGAGAAGATGAAAA
GGGAGGGGGAAGGAGTGGATGGGCGGCAGTACGCGACGAAGAGGAGAGAG
AAGGGGACGTGGACGACTTTCTAAAAGAGAAAGATGAGGATGAATCCATT
GTAGAGGAAGAAGACAAAGATGAGCTGGAAGAAGAGGACGATGATCAGTT
AGTCACTGAAGAGGAAGAGGAGGACGAGTTGGAGGCAGAGGCATTGACCG
ATCTGGATCCGGAGATGGAGGGCGAGGAGGAGGTGGGCGCCGTGGCGAGG
GGAGTTGAGATGCAGGCTGAGGGTTTGATTCCGAACGTAGCGGAAGAGGA
AGCAGTCATAAAGGAAGAAGGAAATACTGCACCAGAGGGAGCATGCTATC
CAGGGATGGAGCACACGGACCATATTCTGGAGAATCTGGAGCGTCTGGCG
CAAAAGCTGGAGGAGTAAGGGCGGAAGCGGGAAAGAATTGGGGACGAGAG
GGAACGGCCAGGGAAGCAGGAGGTATACTAAGACAGAAGCATCACAACAA
GCAAATAATCAAAATAACGCTTAATATTCAAGAAGCGGGCGTTTTCAAAG
ACAGAGCAGACTCCGCAGCCTCCGAGTCGATTTTTTCCTTCTTGTTCCCT
TCCCTTGCTATAGAATCTTCTAGTAAGCGCTTCAGATCTCCGGCTACGTC
TCCGTCATCAAAGGGCGTCGTGCATCTCTGATGCTTTTCGTCTCCCTACA
ATTAACAAGCACCTCTCATCCTTTTGGTCCACACCTGCATCCTTTCAATC
GATACCATAGAGTCTCCGCTCCAGCACCTTCTCCTCCCTTCGTGCTCGCC
ATCTTCTCCTCCTGATTCTTGAATCGAGTCATAAGAGAGGACAGATGAAA
GAAAAGTTTAAAGCACGGAGCCCAAAGCCTATGACTAGAAGCGGAAATAA
CAAGGGACAAAATGAGGGAGAAAGAGAGACCAAGGCCCAAATGTGCAAAA
TTCAATTTAACACTAAATCAAATACAAAGCCAATAACGAT back to topCoding sequence (CDS) from alignment at chr8:1263734..1265623- >NO08G04320.1 ID=NO08G04320.1|Name=NO08G04320.1|organism=Nannochloropsis oceanica|type=CDS|length=999bp|location=Sequence derived from alignment at chr8:1263734..1265623- (Nannochloropsis oceanica) ATGCACCGCAACTGTCTTTACCACGCCATTCCTTCTGGCTGGCTGCTGCT CTTTTTCCTGGTCTTGCTCCCACCCCAGGCAATCGTCTTGGCCTTTTTCG CACACCCTCCACCCACCTTCATCCCTGTTTGGTACGCGCCGCAGCAGCAA CTGCAGCAGCTGCAGCATACACATACATGCCTATGGTTTGCAGCTATAAT GTCGACTTCGGACACCACCCACGACCTCCCCCTTCTCGATGATGTCCGCC GCATGCATCCGCGGGAGCTCTGTAAGCTGCTGACGGAAAACAAAGAGGAT CTAGAACGCCTGCATACTGTGGGGTTGATGCTTACGGAAGAAATTTCCCG TCTTCGGAACCAGGTGTGGATGGAGCAACTGTCACGCAAAGTGACCGTCT CTCGGGCACATGCTATGGCGACGAAATGGCAAGTCAAGGCGGTGCGGGAG GAGACCAAGGCCTTATCGACCGAAATCAGGATAGAGAGACTGAAAAACCG CGTTCGTTTTCTCGAAACCACCAATAAGGACTTGGTTGAGGAGCTTGGGT GGATCGGAGGGGGGAGGGGAGAAGATGAAAAGGGAGGGGGAAGGAGTGGA TGGGCGGCAGTACGCGACGAAGAGGAGAGAGAAGGGGACGTGGACGACTT TCTAAAAGAGAAAGATGAGGATGAATCCATTGTAGAGGAAGAAGACAAAG ATGAGCTGGAAGAAGAGGACGATGATCAGTTAGTCACTGAAGAGGAAGAG GAGGACGAGTTGGAGGCAGAGGCATTGACCGATCTGGATCCGGAGATGGA GGGCGAGGAGGAGGTGGGCGCCGTGGCGAGGGGAGTTGAGATGCAGGCTG AGGGTTTGATTCCGAACGTAGCGGAAGAGGAAGCAGTCATAAAGGAAGAA GGAAATACTGCACCAGAGGGAGCATGCTATCCAGGGATGGAGCACACGGA CCATATTCTGGAGAATCTGGAGCGTCTGGCGCAAAAGCTGGAGGAGTAA back to top
|