NO08G03900.1, NO08G03900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03900.1
Unique NameNO08G03900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length806
Alignment locationchr8:1097095..1098389 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1097095..1098389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03900.1 vs.
Match: CBJ29554.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 99.4 bits (246), Expect = 6.900e-18
Identity = 47/86 (54.65%), Postives = 63/86 (73.26%), Query Frame = 0 
Query:    1 MPFRVNFPSFFMALIRAPTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVT 87
            MP R  FP+  MA+I  P++++P QA F++ P M K E++EYLTKIY + V+KVMT N  G+RKRI G R ++ YKRP+FKKA VT
Sbjct:    1 MPIRSWFPNMVMAMISGPSRSRPAQASFKIQPKMTKWEVKEYLTKIYNVPVKKVMTQNFEGKRKRIMGKRSIVPYKRPNFKKAIVT 86
The following BLAST results are available for this feature:
BLAST of NO08G03900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ29554.16.900e-1854.65conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03900NO08G03900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03900.1NO08G03900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03900.1.cds1NO08G03900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03900.1.cds2NO08G03900.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03900.1 ID=NO08G03900.1|Name=NO08G03900.1|organism=Nannochloropsis oceanica|type=mRNA|length=806bp
TTCGTGGTGGCGCGACCATGCTGTAGTTGTATGTACGGTGCGTGGCACGG
GTTGACAAGTGAGGCAGGAGGCCGCCACAACGAAAGAACATAGGCGGTTG
TCCGTTGTTGATGACGCTTTGGAGATCGTTGATGCTGGCGCGCCTGTTGG
TGAGCCTAGGAGATGTACATGTCCCCAAACTCACGACATTCCCCTCTGTA
AATCTACAGATCGGTAGGGGACGCAAAGAGTAGCGGGGACTGGTTGCGCC
GCAAAAGAGGAAGGGGACAGAGACAGGAAAGGAAGAGCAAAGCAAGTACT
CTTTGAGACGAGGCGCGCACTCAAGCGGCTAGATTACTTGTCCAAGGATC
CACACCACTACCACAAAGATGCCGTTTCGCGTCAACTTTCCCTCCTTCTT
CATGGCCCTTATCCGAGCTCCCACTCAAGCTCAGCCGTACCAAGCCGTCT
TCCGCGTGTCCCCAGCCATGAACAAATTAGAGATCCGGGAATACTTGACA
AAAATTTATGGGTTGTCAGTGCGCAAGGTCATGACGGCAAATATGGCAGG
GAGAAGAAAAAGGATTTTTGGTGCCAGGAGACTTCTGCGATACAAGCGAC
CCGATTTTAAGAAGGCATATGTGACCCTTGGAGAGGAGGTGGAAGCGGGA
CAAGGAGGAGGGGCGGTATGAGGGAAGGAAGGAGGGAGGGAAGAGAGGAT
AAGACAAACGGAAAGAATGAAGAGGAAAAACGCATGTACGCAATGTTTTT
TTTTTCTGAATGCGAGGATACACATACATACATACATACATACATACATA
CATACA
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protein sequence of NO08G03900.1

>NO08G03900.1-protein ID=NO08G03900.1-protein|Name=NO08G03900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MPFRVNFPSFFMALIRAPTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLS
VRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGEEVEAGQGGGAV
*
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mRNA from alignment at chr8:1097095..1098389-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03900.1 ID=NO08G03900.1|Name=NO08G03900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1295bp|location=Sequence derived from alignment at chr8:1097095..1098389- (Nannochloropsis oceanica)
TTCGTGGTGGCGCGACCATGCTGTAGTTGTATGTACGGTGCGTGGCACGG
GTTGACAAGTGAGGCAGGAGGCCGCCACAACGAAAGAACATAGGCGGTTG
TCCGTTGTTGATGACGCTTTGGAGATCGTTGATGCTGGCGCGCCTGTTGG
TGAGCCTAGGAGATGTACATGTCCCCAAACTCACGACATTCCCCTCTGTA
AATCTACAGATCGGTAGGGGACGCAAAGAGTAGCGGGGACTGGTTGCGCC
GCAAAAGAGGAAGGGGACAGAGACAGGAAAGGAAGAGCAAAGCAAGTACT
CTTTGAGACGAGGCGCGCACTCAAGCGGCTAGATTACTTGTCCAAGGATC
CACACCACTACCACAAAGGTATGTAGTCGACCACCAATACCGTCAAAATA
ATCGGATGGGGTTGCTTGTGTAAGGCGGCAAGGACGGAGCTCGTGGGACT
GCCGCAGCCTTAGGGTAAGGATGCAAGACACATGGAGAGCCAAGATAGCG
TCGTGAACATCACCAACAGACCCTCTCTCCCTGCAACCGCCTTCACGGCA
ACATATGCAAATGGGTAGCCGTGTTGAATCGCAGACATGTATGACCGGCC
ACTCATTTCCTCCTTCCCCTTAATTCTTTTATCAGATGCCGTTTCGCGTC
AACTTTCCCTCCTTCTTCATGGCCCTTATCCGAGCTCCCACTCAAGCTCA
GCCGTACCAAGCCGTCTTCCGCGTGTCCCCAGCCATGAACAAATTAGAGA
TCCGGGAATACTTGACAAAAATTTATGGGTTGTCAGTGCGCAAGGTCATG
ACGGCAAATATGGCAGGGAGAAGAAAAAGGTGCGTTTGTGTGTGTGTGCT
GCCATGAGGTACAACGTCTCTCATTCCTTTCATCCAACGCGGTGCAGAAG
TCTCTCTGGCTCGCATGCTACCCTTTCCCATACTCCTTCTTCCTCCATCC
TGTGACCCTCCGAACCCCATTTACTCCACCCATCGGCTCTCTCTCTTCCT
CCCTCTCTCTCTCCCTCCCTTCCTCCTCCTCCTTTTCCTCCTCCTCTCCA
GGATTTTTGGTGCCAGGAGACTTCTGCGATACAAGCGACCCGATTTTAAG
AAGGCATATGTGACCCTTGGAGAGGAGGTGGAAGCGGGACAAGGAGGAGG
GGCGGTATGAGGGAAGGAAGGAGGGAGGGAAGAGAGGATAAGACAAACGG
AAAGAATGAAGAGGAAAAACGCATGTACGCAATGTTTTTTTTTTCTGAAT
GCGAGGATACACATACATACATACATACATACATACATACATACA
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Coding sequence (CDS) from alignment at chr8:1097095..1098389-

>NO08G03900.1 ID=NO08G03900.1|Name=NO08G03900.1|organism=Nannochloropsis oceanica|type=CDS|length=303bp|location=Sequence derived from alignment at chr8:1097095..1098389- (Nannochloropsis oceanica)
ATGCCGTTTCGCGTCAACTTTCCCTCCTTCTTCATGGCCCTTATCCGAGC
TCCCACTCAAGCTCAGCCGTACCAAGCCGTCTTCCGCGTGTCCCCAGCCA
TGAACAAATTAGAGATCCGGGAATACTTGACAAAAATTTATGGGTTGTCA
GTGCGCAAGGTCATGACGGCAAATATGGCAGGGAGAAGAAAAAGGATTTT
TGGTGCCAGGAGACTTCTGCGATACAAGCGACCCGATTTTAAGAAGGCAT
ATGTGACCCTTGGAGAGGAGGTGGAAGCGGGACAAGGAGGAGGGGCGGTA
TGA
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Synonyms
Publications