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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:1092136..1093672 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G03870.1 vs.
Match: EWM26867.1 (hypothetical protein Naga_100097g14 [Nannochloropsis gaditana]) HSP 1 Score: 211.8 bits (538), Expect = 3.000e-51 Identity = 129/264 (48.86%), Postives = 175/264 (66.29%), Query Frame = 0
Query: 53 PSLMTSSPTKAPSVATSSPTKAPSMATRSPTAAAPAPPAVADDLLQE-EKDENENPVVVIDMKVAGATREQVEAVAALVQYIANMPFHVANVSKINVTVEWRGTVVEGGASPTRSLRALPTIPVVHEEDIWELVNDKDKNKGK----KQCSLNVGDTANVTTITIHGLYGSAQSIKQVEDFLSFLSSGIINIWTGTEHLPAFNFVCASEVRMSNEAPSMQFQVMNAEEDDKRKRTGPNAAAIAVPVVFGVVLLGAVGFVLVKKF 312
PS+ T +PT PS++TS P+ +P+ + AP +D + DE ENPVV ID++VAGAT EQ+EAVA LVQ+IA M F AN S INVTVEWRGTVVE +S T R L ++ ++ L + + + GK K+C L+VGD+ NVTTITIHGL+G ++Q+E FL+ +SSGII + +H+P F FVC SEVRMSNEAPS++FQ M+ +E +K + N AI +PVVFG+ L+GAVGF+L++KF
Sbjct: 2 PSISTRAPTTVPSISTSVPSISPTTLPKPVDENAPENNNNEEDPFDDMYDDEVENPVVQIDLQVAGATEEQIEAVAGLVQFIAGMSFPGANRSDINVTVEWRGTVVEMDSSQTPLPRRLRSV-----GEVRALPSSRRETSGKDNENKRCKLSVGDSVNVTTITIHGLHGETY-VRQIESFLALISSGIIPV-VILDHIPVFKFVCDSEVRMSNEAPSLRFQPMDVQETEKTGKDKTNVTAIVIPVVFGIALVGAVGFLLLRKF 258
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G03870.1 ID=NO08G03870.1|Name=NO08G03870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1537bp TTTCCCCACCGTTCTGGTTTTATTTGTTCTTCTTGTTGCTAAAGAAGTGC CTGCGCCCCTCGACCTTTGACCAATCATACTTAAGCAGAAGAATAAGCCA GTGGCCGACAAGTCTTTCCGACATTTGCTTCAGCTCGGATCTCCTTCCTT ACTCCCATATCCTTGGACAGCAATTTACTTACTTGCCCATCAAGCAATTT ATCAAGCGATGCGAAACTACCTTGCAAAACTAATAAAACCACATTACACA CTCGTATAGGACAGTAATCACCTTTTCTCTCTCTTCCATACCTGTAATGA AGTTCTTCTCCGGCAGTAGCCCCATCTTGCTGGCTCTTTTTGGGATCCTA GTCGTAAGCCATGGGCCGCGGGCTACGGATGCCGATGCCAGTCTCACAAC CAAGGAGGGCTCAGACCCCTCCTTGGTACCTACCTTTGTGTCCATGAAAG CTCCATCATTGATGACAAGCTCACCCACGAAAGCCCCATCGGTGGCGACA AGCTCGCCCACAAAAGCCCCGTCGATGGCGACACGCTCGCCTACTGCTGC CGCACCCGCTCCTCCAGCCGTGGCTGATGACCTTCTGCAAGAGGAGAAGG ACGAGAATGAGAACCCCGTCGTGGTGATTGACATGAAAGTCGCTGGGGCC ACCCGAGAACAAGTAGAGGCAGTGGCAGCCTTGGTCCAGTACATTGCTAA TATGCCCTTCCATGTCGCAAACGTATCCAAGATCAATGTCACAGTGGAAT GGAGGGGTACGGTCGTAGAGGGCGGTGCCAGCCCAACACGCTCCCTTCGT GCATTACCCACGATACCGGTAGTCCATGAAGAGGATATCTGGGAGCTGGT AAACGATAAGGATAAAAATAAAGGAAAGAAGCAATGCAGCCTAAATGTGG GTGACACGGCCAACGTCACTACCATCACCATTCATGGCCTGTATGGCAGT GCTCAGAGTATCAAACAAGTGGAAGACTTCCTGTCCTTCCTGTCTTCGGG AATCATTAACATCTGGACGGGGACGGAACATCTCCCGGCATTCAATTTTG TGTGTGCGTCCGAGGTGCGCATGAGCAATGAAGCTCCCTCCATGCAATTT CAGGTCATGAATGCAGAGGAGGATGACAAGAGGAAAAGGACGGGTCCTAA TGCAGCGGCTATTGCAGTGCCTGTTGTGTTTGGTGTCGTGCTGTTAGGAG CAGTGGGTTTCGTTCTCGTTAAAAAGTTTGGAGTCGGTGTGTAGAGAAGT GACTATTTGATTGTCGGGCGAGAAGAGAGCAATTGTGTGTACATGTATGA ATGTGTGTGCATTCATGTGAACGAATAACGAGTGAAATAAAGAATGGAAG TGTGCAAGCGAGAGAGCGTATGTGCATGTGCGTGAAGAAGGCAACCGGAC AATTAACCGACAACAATCGTCACGGGAAAGGGTGTTCCGATAGGGGAAAA GGGGCGTGTGAGTGGAACTCACATGTTACCAGAAAGCGAAAAGAGAAGCA TAAGGACAAAGCAAGAGAAATGAGCCCCAAGAATACA back to topprotein sequence of NO08G03870.1 >NO08G03870.1-protein ID=NO08G03870.1-protein|Name=NO08G03870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp MKFFSGSSPILLALFGILVVSHGPRATDADASLTTKEGSDPSLVPTFVSM KAPSLMTSSPTKAPSVATSSPTKAPSMATRSPTAAAPAPPAVADDLLQEE KDENENPVVVIDMKVAGATREQVEAVAALVQYIANMPFHVANVSKINVTV EWRGTVVEGGASPTRSLRALPTIPVVHEEDIWELVNDKDKNKGKKQCSLN VGDTANVTTITIHGLYGSAQSIKQVEDFLSFLSSGIINIWTGTEHLPAFN FVCASEVRMSNEAPSMQFQVMNAEEDDKRKRTGPNAAAIAVPVVFGVVLL GAVGFVLVKKFGVGV* back to topmRNA from alignment at chr8:1092136..1093672+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G03870.1 ID=NO08G03870.1|Name=NO08G03870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1537bp|location=Sequence derived from alignment at chr8:1092136..1093672+ (Nannochloropsis oceanica) TTTCCCCACCGTTCTGGTTTTATTTGTTCTTCTTGTTGCTAAAGAAGTGC
CTGCGCCCCTCGACCTTTGACCAATCATACTTAAGCAGAAGAATAAGCCA
GTGGCCGACAAGTCTTTCCGACATTTGCTTCAGCTCGGATCTCCTTCCTT
ACTCCCATATCCTTGGACAGCAATTTACTTACTTGCCCATCAAGCAATTT
ATCAAGCGATGCGAAACTACCTTGCAAAACTAATAAAACCACATTACACA
CTCGTATAGGACAGTAATCACCTTTTCTCTCTCTTCCATACCTGTAATGA
AGTTCTTCTCCGGCAGTAGCCCCATCTTGCTGGCTCTTTTTGGGATCCTA
GTCGTAAGCCATGGGCCGCGGGCTACGGATGCCGATGCCAGTCTCACAAC
CAAGGAGGGCTCAGACCCCTCCTTGGTACCTACCTTTGTGTCCATGAAAG
CTCCATCATTGATGACAAGCTCACCCACGAAAGCCCCATCGGTGGCGACA
AGCTCGCCCACAAAAGCCCCGTCGATGGCGACACGCTCGCCTACTGCTGC
CGCACCCGCTCCTCCAGCCGTGGCTGATGACCTTCTGCAAGAGGAGAAGG
ACGAGAATGAGAACCCCGTCGTGGTGATTGACATGAAAGTCGCTGGGGCC
ACCCGAGAACAAGTAGAGGCAGTGGCAGCCTTGGTCCAGTACATTGCTAA
TATGCCCTTCCATGTCGCAAACGTATCCAAGATCAATGTCACAGTGGAAT
GGAGGGGTACGGTCGTAGAGGGCGGTGCCAGCCCAACACGCTCCCTTCGT
GCATTACCCACGATACCGGTAGTCCATGAAGAGGATATCTGGGAGCTGGT
AAACGATAAGGATAAAAATAAAGGAAAGAAGCAATGCAGCCTAAATGTGG
GTGACACGGCCAACGTCACTACCATCACCATTCATGGCCTGTATGGCAGT
GCTCAGAGTATCAAACAAGTGGAAGACTTCCTGTCCTTCCTGTCTTCGGG
AATCATTAACATCTGGACGGGGACGGAACATCTCCCGGCATTCAATTTTG
TGTGTGCGTCCGAGGTGCGCATGAGCAATGAAGCTCCCTCCATGCAATTT
CAGGTCATGAATGCAGAGGAGGATGACAAGAGGAAAAGGACGGGTCCTAA
TGCAGCGGCTATTGCAGTGCCTGTTGTGTTTGGTGTCGTGCTGTTAGGAG
CAGTGGGTTTCGTTCTCGTTAAAAAGTTTGGAGTCGGTGTGTAGAGAAGT
GACTATTTGATTGTCGGGCGAGAAGAGAGCAATTGTGTGTACATGTATGA
ATGTGTGTGCATTCATGTGAACGAATAACGAGTGAAATAAAGAATGGAAG
TGTGCAAGCGAGAGAGCGTATGTGCATGTGCGTGAAGAAGGCAACCGGAC
AATTAACCGACAACAATCGTCACGGGAAAGGGTGTTCCGATAGGGGAAAA
GGGGCGTGTGAGTGGAACTCACATGTTACCAGAAAGCGAAAAGAGAAGCA
TAAGGACAAAGCAAGAGAAATGAGCCCCAAGAATACA back to topCoding sequence (CDS) from alignment at chr8:1092136..1093672+ >NO08G03870.1 ID=NO08G03870.1|Name=NO08G03870.1|organism=Nannochloropsis oceanica|type=CDS|length=948bp|location=Sequence derived from alignment at chr8:1092136..1093672+ (Nannochloropsis oceanica) ATGAAGTTCTTCTCCGGCAGTAGCCCCATCTTGCTGGCTCTTTTTGGGAT CCTAGTCGTAAGCCATGGGCCGCGGGCTACGGATGCCGATGCCAGTCTCA CAACCAAGGAGGGCTCAGACCCCTCCTTGGTACCTACCTTTGTGTCCATG AAAGCTCCATCATTGATGACAAGCTCACCCACGAAAGCCCCATCGGTGGC GACAAGCTCGCCCACAAAAGCCCCGTCGATGGCGACACGCTCGCCTACTG CTGCCGCACCCGCTCCTCCAGCCGTGGCTGATGACCTTCTGCAAGAGGAG AAGGACGAGAATGAGAACCCCGTCGTGGTGATTGACATGAAAGTCGCTGG GGCCACCCGAGAACAAGTAGAGGCAGTGGCAGCCTTGGTCCAGTACATTG CTAATATGCCCTTCCATGTCGCAAACGTATCCAAGATCAATGTCACAGTG GAATGGAGGGGTACGGTCGTAGAGGGCGGTGCCAGCCCAACACGCTCCCT TCGTGCATTACCCACGATACCGGTAGTCCATGAAGAGGATATCTGGGAGC TGGTAAACGATAAGGATAAAAATAAAGGAAAGAAGCAATGCAGCCTAAAT GTGGGTGACACGGCCAACGTCACTACCATCACCATTCATGGCCTGTATGG CAGTGCTCAGAGTATCAAACAAGTGGAAGACTTCCTGTCCTTCCTGTCTT CGGGAATCATTAACATCTGGACGGGGACGGAACATCTCCCGGCATTCAAT TTTGTGTGTGCGTCCGAGGTGCGCATGAGCAATGAAGCTCCCTCCATGCA ATTTCAGGTCATGAATGCAGAGGAGGATGACAAGAGGAAAAGGACGGGTC CTAATGCAGCGGCTATTGCAGTGCCTGTTGTGTTTGGTGTCGTGCTGTTA GGAGCAGTGGGTTTCGTTCTCGTTAAAAAGTTTGGAGTCGGTGTGTAG back to top
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