NO08G02270.1, NO08G02270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02270.1
Unique NameNO08G02270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length591
Alignment locationchr8:665071..665661 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:665071..665661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02270.1 vs.
Match: EWM26762.1 (mitochondrial import inner membrane translocase subunit tim22 [Nannochloropsis gaditana])

HSP 1 Score: 345.9 bits (886), Expect = 8.300e-92
Identity = 167/175 (95.43%), Postives = 172/175 (98.29%), Query Frame = 0 
Query:   22 KRDVLFTNPPPFPLPFYKYVSLPQTPAGTVAVAPPNPQENCVGRSVFGAIAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQMRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAIFSGVMEVVMGPH 197
            K D+LFT+PPPFPLPFYKYVSLPQTPAG VAVAPPNPQENCVGRSVFGA+AGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQ+RLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFA FSG+MEVVMGPH
Sbjct:   33 KPDLLFTSPPPFPLPFYKYVSLPQTPAGMVAVAPPNPQENCVGRSVFGAVAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVMGPH 207
The following BLAST results are available for this feature:
BLAST of NO08G02270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26762.18.300e-9295.43mitochondrial import inner membrane translocase su... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02270NO08G02270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02270.1NO08G02270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02270.1.cds1NO08G02270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02270.1 ID=NO08G02270.1|Name=NO08G02270.1|organism=Nannochloropsis oceanica|type=mRNA|length=591bp
ATGGCATCTCCCCCACCCAGCACCAGCACCGACAACCCCACCCCACCCGT
CCACGGTCCCATCAAGCGGGACGTCCTATTCACCAACCCACCACCCTTTC
CTCTGCCCTTCTATAAGTACGTCTCGTTGCCACAGACACCCGCGGGAACG
GTGGCAGTGGCACCGCCCAATCCCCAGGAAAATTGTGTTGGCCGAAGTGT
GTTTGGCGCAATTGCAGGTGCGGGACTGGGCGTGATGATGGGCATTTTTC
TGGGTGCTATGGGAGACATGTCACCCGCTATCCCCATTATCAATGGCCGA
GAGGCCCCGCAGGCACCTGCGGGGGAGCAGATGCGCCTGGCCTATCGCGC
CACCTTCGAGCGCTGCGGGCATTGGGCCCGCAATTTCATGGCCCTCACCG
CCTTGTTTTCGGGTGTGGACTGTGTTGTGGAAAAGTTCCGTGGCAAGCAC
GATGCATATAATGCGGTTATCTCTGGCTGTGGGGTTGGGGCTGCGCTCTC
GGCCAAGCAAGGTCCCCAGGCGGCGTGTCTGGGATGCGCGGGATTTGCCA
TTTTTTCGGGCGTCATGGAGGTTGTGATGGGGCCACATTAA
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protein sequence of NO08G02270.1

>NO08G02270.1-protein ID=NO08G02270.1-protein|Name=NO08G02270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MASPPPSTSTDNPTPPVHGPIKRDVLFTNPPPFPLPFYKYVSLPQTPAGT
VAVAPPNPQENCVGRSVFGAIAGAGLGVMMGIFLGAMGDMSPAIPIINGR
EAPQAPAGEQMRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKH
DAYNAVISGCGVGAALSAKQGPQAACLGCAGFAIFSGVMEVVMGPH*
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mRNA from alignment at chr8:665071..665661+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02270.1 ID=NO08G02270.1|Name=NO08G02270.1|organism=Nannochloropsis oceanica|type=mRNA|length=591bp|location=Sequence derived from alignment at chr8:665071..665661+ (Nannochloropsis oceanica)
ATGGCATCTCCCCCACCCAGCACCAGCACCGACAACCCCACCCCACCCGT
CCACGGTCCCATCAAGCGGGACGTCCTATTCACCAACCCACCACCCTTTC
CTCTGCCCTTCTATAAGTACGTCTCGTTGCCACAGACACCCGCGGGAACG
GTGGCAGTGGCACCGCCCAATCCCCAGGAAAATTGTGTTGGCCGAAGTGT
GTTTGGCGCAATTGCAGGTGCGGGACTGGGCGTGATGATGGGCATTTTTC
TGGGTGCTATGGGAGACATGTCACCCGCTATCCCCATTATCAATGGCCGA
GAGGCCCCGCAGGCACCTGCGGGGGAGCAGATGCGCCTGGCCTATCGCGC
CACCTTCGAGCGCTGCGGGCATTGGGCCCGCAATTTCATGGCCCTCACCG
CCTTGTTTTCGGGTGTGGACTGTGTTGTGGAAAAGTTCCGTGGCAAGCAC
GATGCATATAATGCGGTTATCTCTGGCTGTGGGGTTGGGGCTGCGCTCTC
GGCCAAGCAAGGTCCCCAGGCGGCGTGTCTGGGATGCGCGGGATTTGCCA
TTTTTTCGGGCGTCATGGAGGTTGTGATGGGGCCACATTAA
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Coding sequence (CDS) from alignment at chr8:665071..665661+

>NO08G02270.1 ID=NO08G02270.1|Name=NO08G02270.1|organism=Nannochloropsis oceanica|type=CDS|length=591bp|location=Sequence derived from alignment at chr8:665071..665661+ (Nannochloropsis oceanica)
ATGGCATCTCCCCCACCCAGCACCAGCACCGACAACCCCACCCCACCCGT
CCACGGTCCCATCAAGCGGGACGTCCTATTCACCAACCCACCACCCTTTC
CTCTGCCCTTCTATAAGTACGTCTCGTTGCCACAGACACCCGCGGGAACG
GTGGCAGTGGCACCGCCCAATCCCCAGGAAAATTGTGTTGGCCGAAGTGT
GTTTGGCGCAATTGCAGGTGCGGGACTGGGCGTGATGATGGGCATTTTTC
TGGGTGCTATGGGAGACATGTCACCCGCTATCCCCATTATCAATGGCCGA
GAGGCCCCGCAGGCACCTGCGGGGGAGCAGATGCGCCTGGCCTATCGCGC
CACCTTCGAGCGCTGCGGGCATTGGGCCCGCAATTTCATGGCCCTCACCG
CCTTGTTTTCGGGTGTGGACTGTGTTGTGGAAAAGTTCCGTGGCAAGCAC
GATGCATATAATGCGGTTATCTCTGGCTGTGGGGTTGGGGCTGCGCTCTC
GGCCAAGCAAGGTCCCCAGGCGGCGTGTCTGGGATGCGCGGGATTTGCCA
TTTTTTCGGGCGTCATGGAGGTTGTGATGGGGCCACATTAA
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Synonyms
Publications