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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:387229..388877 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G01270.1 vs.
Match: EWM26662.1 (hypothetical protein Naga_100001g33 [Nannochloropsis gaditana]) HSP 1 Score: 505.4 bits (1300), Expect = 2.000e-139 Identity = 270/460 (58.70%), Postives = 324/460 (70.43%), Query Frame = 0
Query: 33 WVALAA----FRQTLAAIWGHDNIEV--MPHTSLFSAMSRRSLPPMQRP---RPAFHLWPELNPHEHEDRNLGRSRVWQRFSNATGHSDRVIEVD---------RKTDFQGFLKKERNALELFESNWALTWTRWKPFVSIGAKGMVGATMCLAGAHFGRCVVLFHTMRVTGWPAFQNALVELEKSYSAAREVVKAEVGKVVRPRELLQAVSYELKGVRCLIQESQKALEDGVISKAEAKEILRQAQVDKKKLEYESWCLNQALDSFAALSAAIDTNRLKDAGKGLYTGMVACVASAHSVTVRKLSLAFDLGSILSGNIACVMCSLMERIHSQEMARFLPPETRKFFKMSIQIAGMIQGLLIINTVVPKMSLRISSAALGAAWLSDAIAETVDPWLKAHEGWEPIAGRLPYAVLQVSLTVGGYYVQKHVYPGRFPLLVERFLAPLGFVESRLKDFNGLFKK 475
W +AA + Q+ A WG ++ + SL +R S +R R AFHLW + HEHE R L RS VWQRFSN TG + RK G L +E AL+ E W + KPFVS AK + G TMCL GAH+ RC V+FHTMRVTGWPAF A+ EL +SYSAAREVVK+EV KVVRP EL +AVSYELK V LI+ESQK LEDG +S+ EA EI+R+AQ+DKK+LEYE+WCLNQALDS AAL AAID RL++AGKGLYTG +AC AS+ S+TV KLSLAFDLG IL+ N++CV +LM R HS+E+AR LPPETR+F K+S QI G IQGLLI+NTV+PK+SLRISSAALGAAWL+DAI E DPW++AH+GW P+A LPYAVLQV LT+GGYYVQK VYPG+ PL+VER L+PL F E RL N +F K
Sbjct: 11 WFFIAALGSNWLQSHAGRWGDARLQAATLKPRSLLIRDARYSASNYRRASSHRLAFHLWGK--HHEHEGRALERSTVWQRFSNTTGDATNSSSTTIQQLGSFSTRKNPVFGILSQEDLALDKVEQCVCRCWGQCKPFVSTAAKALAGGTMCLFGAHYARCAVVFHTMRVTGWPAFHKAVQELFRSYSAAREVVKSEVSKVVRPGELFRAVSYELKSVHFLIKESQKKLEDGYLSRMEAMEIIRRAQIDKKRLEYEAWCLNQALDSVAALGAAIDLTRLREAGKGLYTGALACFASSSSMTVCKLSLAFDLGGILANNLSCVCATLMSRWHSKELARILPPETRRFIKLSFQIMGAIQGLLIVNTVLPKVSLRISSAALGAAWLTDAITEICDPWIQAHDGWNPMANHLPYAVLQVGLTIGGYYVQKTVYPGKIPLIVERVLSPLAFFEKRLNYLNSMFAK 468
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G01270.1 ID=NO08G01270.1|Name=NO08G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1425bp ATGGTGCCACGACACCCTACACGGCAAGCTGAATACCACAATAGCATGAC CTGCCCATACCGACGCGTTCCAAGACCACCAGCTCTGTTGCTTTTTTGGG TCGCATTGGCGGCCTTCCGGCAAACACTGGCAGCGATTTGGGGCCATGAC AACATTGAAGTCATGCCCCATACATCCTTATTCTCTGCTATGTCACGACG CTCTCTTCCACCCATGCAGCGACCCCGACCAGCATTTCATCTCTGGCCCG AACTAAACCCCCATGAGCACGAAGACCGCAATCTAGGACGTTCCAGAGTA TGGCAACGATTTAGCAACGCGACGGGGCACTCCGACAGGGTGATTGAGGT CGACAGGAAAACGGACTTCCAAGGTTTCCTAAAGAAAGAGCGGAATGCCT TAGAACTTTTCGAGAGTAATTGGGCATTAACCTGGACGCGATGGAAACCC TTTGTTTCTATTGGAGCCAAGGGCATGGTCGGTGCGACGATGTGCCTTGC AGGGGCCCATTTTGGGAGATGCGTTGTTTTGTTCCACACGATGCGCGTGA CGGGCTGGCCTGCTTTTCAGAATGCGTTGGTGGAGTTGGAGAAGAGCTAC AGTGCCGCACGGGAGGTGGTAAAGGCAGAGGTGGGTAAAGTGGTAAGGCC TCGGGAATTACTACAGGCCGTTTCATATGAACTTAAGGGCGTGCGCTGCC TCATCCAAGAATCGCAAAAGGCGCTGGAGGACGGGGTGATATCCAAGGCC GAAGCCAAGGAGATACTGAGGCAGGCACAGGTGGATAAGAAAAAGCTGGA GTACGAATCATGGTGCCTGAATCAGGCGTTGGACTCATTTGCGGCTCTGA GCGCGGCTATTGACACAAATCGGCTCAAGGATGCAGGAAAAGGACTGTAT ACTGGCATGGTTGCTTGTGTTGCTTCGGCCCACAGCGTGACTGTGCGTAA ATTGTCTTTAGCGTTTGATTTGGGGAGTATTTTATCAGGGAATATTGCCT GTGTCATGTGTTCCCTGATGGAGCGCATACACAGTCAAGAGATGGCTCGT TTTTTGCCTCCCGAGACAAGAAAATTTTTCAAAATGTCCATCCAAATCGC AGGAATGATTCAAGGTCTCTTGATCATTAACACCGTCGTACCCAAAATGA GTTTGCGCATCTCCAGTGCTGCCTTGGGGGCGGCCTGGCTGTCGGATGCC ATCGCTGAGACTGTTGATCCATGGTTGAAGGCACATGAGGGATGGGAACC AATAGCCGGACGCTTGCCTTACGCGGTTTTGCAAGTGAGCCTGACTGTTG GAGGGTACTATGTGCAAAAGCATGTATACCCAGGCAGGTTTCCCTTATTA GTGGAGCGTTTTTTGGCACCTTTGGGCTTTGTGGAGAGTCGGCTGAAAGA TTTCAATGGGTTGTTTAAAAAGTAG back to topprotein sequence of NO08G01270.1 >NO08G01270.1-protein ID=NO08G01270.1-protein|Name=NO08G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=475bp MVPRHPTRQAEYHNSMTCPYRRVPRPPALLLFWVALAAFRQTLAAIWGHD NIEVMPHTSLFSAMSRRSLPPMQRPRPAFHLWPELNPHEHEDRNLGRSRV WQRFSNATGHSDRVIEVDRKTDFQGFLKKERNALELFESNWALTWTRWKP FVSIGAKGMVGATMCLAGAHFGRCVVLFHTMRVTGWPAFQNALVELEKSY SAAREVVKAEVGKVVRPRELLQAVSYELKGVRCLIQESQKALEDGVISKA EAKEILRQAQVDKKKLEYESWCLNQALDSFAALSAAIDTNRLKDAGKGLY TGMVACVASAHSVTVRKLSLAFDLGSILSGNIACVMCSLMERIHSQEMAR FLPPETRKFFKMSIQIAGMIQGLLIINTVVPKMSLRISSAALGAAWLSDA IAETVDPWLKAHEGWEPIAGRLPYAVLQVSLTVGGYYVQKHVYPGRFPLL VERFLAPLGFVESRLKDFNGLFKK* back to topmRNA from alignment at chr8:387229..388877+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G01270.1 ID=NO08G01270.1|Name=NO08G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1649bp|location=Sequence derived from alignment at chr8:387229..388877+ (Nannochloropsis oceanica) ATGGTGCCACGACACCCTACACGGCAAGCTGAATACCACAATAGGTGGGT
ACCACAATATGTGTCGGTTTTTGCCAACCGTGCTATTTATGGCCAAAATG
AAACGACAAATGTGGCCTCTTTTCGTTCGTTCAACCTTAACCGACTCCCC
CTTCCCCACATTCAGCATGACCTGCCCATACCGACGCGTTCCAAGACCAC
CAGCTCTGTTGCTTTTTTGGGTCGCATTGGCGGCCTTCCGGCAAACACTG
GCAGCGATTTGGGGCCATGACAACATTGGTAAGCGCAGGCATGTATATAT
ATATGACGTTTCCATGTTCTCCAGACCGGTCCACTTGGTACTAACTTTCC
CAACCCTCTCGTCCCTACTTCTGTTTCCTAGAAGTCATGCCCCATACATC
CTTATTCTCTGCTATGTCACGACGCTCTCTTCCACCCATGCAGCGACCCC
GACCAGCATTTCATCTCTGGCCCGAACTAAACCCCCATGAGCACGAAGAC
CGCAATCTAGGACGTTCCAGAGTATGGCAACGATTTAGCAACGCGACGGG
GCACTCCGACAGGGTGATTGAGGTCGACAGGAAAACGGACTTCCAAGGTT
TCCTAAAGAAAGAGCGGAATGCCTTAGAACTTTTCGAGAGTAATTGGGCA
TTAACCTGGACGCGATGGAAACCCTTTGTTTCTATTGGAGCCAAGGGCAT
GGTCGGTGCGACGATGTGCCTTGCAGGGGCCCATTTTGGGAGATGCGTTG
TTTTGTTCCACACGATGCGCGTGACGGGCTGGCCTGCTTTTCAGAATGCG
TTGGTGGAGTTGGAGAAGAGCTACAGTGCCGCACGGGAGGTGGTAAAGGC
AGAGGTGGGTAAAGTGGTAAGGCCTCGGGAATTACTACAGGCCGTTTCAT
ATGAACTTAAGGGCGTGCGCTGCCTCATCCAAGAATCGCAAAAGGCGCTG
GAGGACGGGGTGATATCCAAGGCCGAAGCCAAGGAGATACTGAGGCAGGC
ACAGGTGGATAAGAAAAAGCTGGAGTACGAATCATGGTGCCTGAATCAGG
CGTTGGACTCATTTGCGGCTCTGAGCGCGGCTATTGACACAAATCGGCTC
AAGGATGCAGGAAAAGGACTGTATACTGGCATGGTTGCTTGTGTTGCTTC
GGCCCACAGCGTGACTGTGCGTAAATTGTCTTTAGCGTTTGATTTGGGGA
GTATTTTATCAGGGAATATTGCCTGTGTCATGTGTTCCCTGATGGAGCGC
ATACACAGTCAAGAGATGGCTCGTTTTTTGCCTCCCGAGACAAGAAAATT
TTTCAAAATGTCCATCCAAATCGCAGGAATGATTCAAGGTCTCTTGATCA
TTAACACCGTCGTACCCAAAATGAGTTTGCGCATCTCCAGTGCTGCCTTG
GGGGCGGCCTGGCTGTCGGATGCCATCGCTGAGACTGTTGATCCATGGTT
GAAGGCACATGAGGGATGGGAACCAATAGCCGGACGCTTGCCTTACGCGG
TTTTGCAAGTGAGCCTGACTGTTGGAGGGTACTATGTGCAAAAGCATGTA
TACCCAGGCAGGTTTCCCTTATTAGTGGAGCGTTTTTTGGCACCTTTGGG
CTTTGTGGAGAGTCGGCTGAAAGATTTCAATGGGTTGTTTAAAAAGTAG back to topCoding sequence (CDS) from alignment at chr8:387229..388877+ >NO08G01270.1 ID=NO08G01270.1|Name=NO08G01270.1|organism=Nannochloropsis oceanica|type=CDS|length=1425bp|location=Sequence derived from alignment at chr8:387229..388877+ (Nannochloropsis oceanica) ATGGTGCCACGACACCCTACACGGCAAGCTGAATACCACAATAGCATGAC CTGCCCATACCGACGCGTTCCAAGACCACCAGCTCTGTTGCTTTTTTGGG TCGCATTGGCGGCCTTCCGGCAAACACTGGCAGCGATTTGGGGCCATGAC AACATTGAAGTCATGCCCCATACATCCTTATTCTCTGCTATGTCACGACG CTCTCTTCCACCCATGCAGCGACCCCGACCAGCATTTCATCTCTGGCCCG AACTAAACCCCCATGAGCACGAAGACCGCAATCTAGGACGTTCCAGAGTA TGGCAACGATTTAGCAACGCGACGGGGCACTCCGACAGGGTGATTGAGGT CGACAGGAAAACGGACTTCCAAGGTTTCCTAAAGAAAGAGCGGAATGCCT TAGAACTTTTCGAGAGTAATTGGGCATTAACCTGGACGCGATGGAAACCC TTTGTTTCTATTGGAGCCAAGGGCATGGTCGGTGCGACGATGTGCCTTGC AGGGGCCCATTTTGGGAGATGCGTTGTTTTGTTCCACACGATGCGCGTGA CGGGCTGGCCTGCTTTTCAGAATGCGTTGGTGGAGTTGGAGAAGAGCTAC AGTGCCGCACGGGAGGTGGTAAAGGCAGAGGTGGGTAAAGTGGTAAGGCC TCGGGAATTACTACAGGCCGTTTCATATGAACTTAAGGGCGTGCGCTGCC TCATCCAAGAATCGCAAAAGGCGCTGGAGGACGGGGTGATATCCAAGGCC GAAGCCAAGGAGATACTGAGGCAGGCACAGGTGGATAAGAAAAAGCTGGA GTACGAATCATGGTGCCTGAATCAGGCGTTGGACTCATTTGCGGCTCTGA GCGCGGCTATTGACACAAATCGGCTCAAGGATGCAGGAAAAGGACTGTAT ACTGGCATGGTTGCTTGTGTTGCTTCGGCCCACAGCGTGACTGTGCGTAA ATTGTCTTTAGCGTTTGATTTGGGGAGTATTTTATCAGGGAATATTGCCT GTGTCATGTGTTCCCTGATGGAGCGCATACACAGTCAAGAGATGGCTCGT TTTTTGCCTCCCGAGACAAGAAAATTTTTCAAAATGTCCATCCAAATCGC AGGAATGATTCAAGGTCTCTTGATCATTAACACCGTCGTACCCAAAATGA GTTTGCGCATCTCCAGTGCTGCCTTGGGGGCGGCCTGGCTGTCGGATGCC ATCGCTGAGACTGTTGATCCATGGTTGAAGGCACATGAGGGATGGGAACC AATAGCCGGACGCTTGCCTTACGCGGTTTTGCAAGTGAGCCTGACTGTTG GAGGGTACTATGTGCAAAAGCATGTATACCCAGGCAGGTTTCCCTTATTA GTGGAGCGTTTTTTGGCACCTTTGGGCTTTGTGGAGAGTCGGCTGAAAGA TTTCAATGGGTTGTTTAAAAAGTAG back to top
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