NO07G02850.2, NO07G02850.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02850.2
Unique NameNO07G02850.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1639
Alignment locationchr7:806547..809153 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:806547..809153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02850.2 vs.
Match: EWM27111.1 (tbp-associated factor 15b [Nannochloropsis gaditana])

HSP 1 Score: 268.5 bits (685), Expect = 2.200e-68
Identity = 132/161 (81.99%), Postives = 147/161 (91.30%), Query Frame = 0 
Query:    9 SAQTLVAGGVETVADLAGLDYQDLSKYDISREIRDKLGRVLDKLRVNGTIFISGLSPSTTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDESGKSKGECVLTYEEPNSAHASISFFHGTELAGKTLKVSMVSYGEDEEGGSGGGYSGGGGVTVVE 170
            +A+ LVA GVETVADLAGL+Y+DL  Y + ++IRDKLGRVLDKLRVNGT+FISGL+P+TTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRD+SGKSKGECVLTYEEPNSAHASISFFHGTELAG+ LKVSMVSYGEDEEGG+ GG    GG+  +E
Sbjct:   47 AAKALVAAGVETVADLAGLEYRDLGSYGLPQDIRDKLGRVLDKLRVNGTVFISGLNPATTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDDSGKSKGECVLTYEEPNSAHASISFFHGTELAGRKLKVSMVSYGEDEEGGNQGGAEETGGIGRIE 207
The following BLAST results are available for this feature:
BLAST of NO07G02850.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27111.12.200e-6881.99tbp-associated factor 15b [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02850NO07G02850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02850.2NO07G02850.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02850.2.cds1NO07G02850.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02850.2.cds2NO07G02850.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02850.2.cds3NO07G02850.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02850.2 ID=NO07G02850.2|Name=NO07G02850.2|organism=Nannochloropsis oceanica|type=mRNA|length=1639bp
ACATGCTGCTTGTGTGGGTGGCTGCGGTGGTGCGAGAAAGTGGGTGTGGG
TGTGTCGAAGTGCATGAATGATAAAGAAATGAAAATCACTTCGAGCGAGC
GCTTCTTCAAGAAGTTCCTTCTGAATCCTGGATAATTAAGTTGACACTAA
ATTTCTCCACCACAGACGCAGCCAATCCACACCAAGAAGCTTTACCGCAC
AAGGTCCTGCAAGGATCAGTGGAAGTTTGGTGCGGTTGATCGTGTGCTTG
ACTGCGCCGGAAATAAGCCTCGTGGGGAGGTGTAGACTTCTGGCAACGCA
AAACAACAACTCCCTTACCGAGCAATAACAACCTTCCACCTATCTCCTCC
TTTCTCACACACGCGCACACACCAAATAGACAATCTGTTCAACACGAAGA
CAAAGCAACTGGATTAACTATGAGCGAGAGCAACGCCGCGCCGGCCTCTG
AACCGTCTGCGCCTGCAGAGCCTGCGGAGGACCCTAGCGAGGTTATTCGG
TTCTTGACACATCTAAGCCCTACATACGCGGAGCCTGCGAAGGTATGCAG
GAGAAGAATTGCTGGAGTTGAAAGAATGGTGGTCGTATGCAGGAGAAGAG
AGTCTGGAGTAAAAAGAGCGGTGGTCGGCGTGGAGAGGGGCGAGAAGTGG
ATGGTCAGGCACCTCGTGTAGCGGCAGAGAGGGCGGAGGCTGGTAGTAAG
CCATGACGAAGGAACAAGCTGGGTCTCGGGAGTCTTAGCAAGCCGCACGA
ATCATGAATATTAACTTTCCATTCTTATCCGCACAGACATTGGTGGCGGG
TGGGGTGGAGACCGTGGCAGATTTGGCGGGGCTGGATTATCAAGACTTGA
GCAAATATGATATTTCCCGGGAAATTCGGGACAAGCTGGGTCGCGTGTTG
GACAAATTGCGTGTTAACGGCACTATCTTTATCTCTGGGCTCAGTCCCTC
AACAACTGAAGCCGAGATTGCGGAATACTTCGGCCAGATTGGTATTGTCA
AGAAGATGAAGCAAAAGCGAGGCTACCCGGACCAATGGCCTTACAAAATC
AAAATGTACCGCGACGAATCGGGTAAAAGCAAAGGCGAATGCGTGCTCAC
GTACGAAGAGCCTAATTCTGCCCATGCTTCGATCTCATTTTTCCACGGCA
CGGAACTGGCTGGGAAGACGTTGAAGGTGAGTATGGTGTCATACGGGGAG
GATGAGGAGGGAGGAAGTGGAGGAGGGTACTCCGGAGGAGGGGGGGTTAC
GGTGGTGGAGGAGGGGGATACGGAGGAGGGAGGGGCGGAGGGGGTGGGTA
TGGAGGAGGGCGAGGAGGGGGAGGAGGTGGCTATGGAAGGGACGACCGAG
GAGGAGGTGGAGGATATAGGGGTGGCGGAGGAGGAAGGGGAGGGGGAGGA
GGGTACGGAGGAGGTTACGGAAGGTACGATGATAGGGGCGGACGTAGGGG
CGACAGGCGCGACCGGCCGTATTAAATACACACAACAGCCTTTTTACGGA
AAAAGGTCGAGTAAATGAGCACGCTATACAAGATATTTACGAAAGAACCA
ATCAGAAAGGAAGGGGGAAAAGGGGATACATTCAACACTCAACAACTTAC
GTGACACGGATCTCTCGCCCTTGAAGAACTTCTTGCTCA
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protein sequence of NO07G02850.2

>NO07G02850.2-protein ID=NO07G02850.2-protein|Name=NO07G02850.2|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MNINFPFLSAQTLVAGGVETVADLAGLDYQDLSKYDISREIRDKLGRVLD
KLRVNGTIFISGLSPSTTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIK
MYRDESGKSKGECVLTYEEPNSAHASISFFHGTELAGKTLKVSMVSYGED
EEGGSGGGYSGGGGVTVVEEGDTEEGGAEGVGMEEGEEGEEVAMEGTTEE
EVEDIGVAEEEGEGEEGTEEVTEGTMIGADVGATGATGRIKYTQQPFYGK
RSSK*
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mRNA from alignment at chr7:806547..809153-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02850.2 ID=NO07G02850.2|Name=NO07G02850.2|organism=Nannochloropsis oceanica|type=mRNA|length=2607bp|location=Sequence derived from alignment at chr7:806547..809153- (Nannochloropsis oceanica)
ACATGCTGCTTGTGTGGGTGGCTGCGGTGGTGCGAGAAAGTGGGTGTGGG
TGTGTCGAAGTGCATGAATGATAAAGAAATGAAAATCACTTCGAGCGAGC
GCTTCTTCAAGAAGTTCCTTCTGAATCCTGGATAATTAAGTTGACACTAA
ATTTCTCCACCACAGACGCAGCCAATCCACACCAAGAAGCTTTACCGCAC
AAGGTCCTGCAAGGATCAGTGGAAGTTTGGTGCGGTTGATCGTGTGCTTG
ACTGCGCCGGAAATAAGCCTCGTGGGGAGGTGTAGACTTCTGGCAACGCA
AAACAACAACTCCCTTACCGAGCAATAACAACCTTCCACCTATCTCCTCC
TTTCTCACACACGCGCACACACCAAATAGACAATCTGTTCAACACGAAGA
CAAAGCAACTGGATTAACTATGAGCGAGAGCAACGCCGCGCCGGCCTCTG
AACCGTCTGCGCCTGCAGAGCCTGCGGAGGACCCTAGCGAGGTTATTCGG
TTCTTGACACATCTAAGCCCTACATACGCGGAGCCTGCGAAGGTATGCAG
GAGAAGAATTGCTGGAGTTGAAAGAATGGTGGTCGTATGCAGGAGAAGAG
AGTCTGGAGTAAAAAGAGCGGTGGTCGGCGTGGAGAGGGGCGAGAAGTGG
ATGGTCAGGCACCTCGTGTAGCGGCAGAGAGGGCGGAGGCTGGTAGTAAG
CCATGACGAAGGAACAAGCTGGGTCTCGGGAGTCTTAGCAAGCCGCACGA
ATCATGAATATTAACTTTCCATTCTTATCCGCACAGACATTGGTGGCGGG
TGGGGTGGAGACCGTGGCAGATTTGGCGGGGCTGGATTATCAAGACTTGA
GCAAATATGATATTTCCCGGGAAATTCGGGACAAGCTGGGTCGCGTGGTG
AGTGAGGCGGAAGGGGTAAAGGGATGAAAAGATGATAAAAGTGATGAGTG
GAATAAAGGGGAAAGAAGCGCGTTCGCCATGGACGGCTTTGTTGGGCTGC
GTGATAGATAATGTTTTGTCGAAGGAGATGGAGACTGCGGCCAAGACTCC
GTGGGTTAGGTAAGCATAATGAGCAGTTCTTCCCTCCCCCCCTCCGTCCT
TCCCCGTCCCACATACTGATGTGTCATTTCTTTTTAATTTACCCAGTTTC
ATAAACTGAAAACACACGTGAACATACTCCGGCTAGTTAGCTTCCCATGC
CCCCACCCTCGCAAGGGTGGGCTGAGATGAGTGCGGGCGAAGTTGTTTAC
TCCGGAGGAGAACAAGATGCGTCTTCCCCCTCTTTTCTTCTTCGAAGGAA
GAAAGGGAGGCACGACTCGGTCGAACTCGCATAAGCACCCTGGGATTAAT
TTCCTCATTCCAGGGCCGCTTGTTTAGTTGGAGCACATAGGTTTCTTTTT
ATGGAGAGTCTTTCCCCTTGAATTTTCCTCAACCTTGCCGTCCTCCCTCC
CTTTTTATGCATTCGGATAACCGGTGTATCAACCAGAGCGATTTATCAGA
TTTAGGGCACTATCCTCTACAGCTGCATCATAAACAACATTAGCATTCCT
TACTCAATTTTTCCCTTCACCCTCCCTCCCTCCCCCCCTTGCCAGTTGGA
CAAATTGCGTGTTAACGGCACTATCTTTATCTCTGGGCTCAGTCCCTCAA
CAACTGAAGCCGAGATTGCGGAATACTTCGGCCAGATTGGTATTGTCAAG
AAGATGAAGCAAAAGCGAGGGTAAGAGAAAATGATATTGAGCGCGTGCGT
TGCTTTGGGTGAAGAGATGTACCACCTCCCCATCCTTTCCTCCTTCCCTT
TTTTTCTCCCTCCCTTCTCCCTACTTCTTGATCCAGATGTTCGACAAAAA
CAATCTGTACCGGGGCGGGCCATGCGAAGGCCCAAAACGATTTGACGTGA
CCCACGAAGATGCAAATTCCACCTTCTCTTCCATTCTCAGTCACCCCTCT
CTCCCTCCCACCCTCCCTCCCTCCCTCCTTATTTTCTTAGCTACCCGGAC
CAATGGCCTTACAAAATCAAAATGTACCGCGACGAATCGGGTAAAAGCAA
AGGCGAATGCGTGCTCACGTACGAAGAGCCTAATTCTGCCCATGCTTCGA
TCTCATTTTTCCACGGCACGGAACTGGCTGGGAAGACGTTGAAGGTGAGT
ATGGTGTCATACGGGGAGGATGAGGAGGGAGGAAGTGGAGGAGGGTACTC
CGGAGGAGGGGGGGTTACGGTGGTGGAGGAGGGGGATACGGAGGAGGGAG
GGGCGGAGGGGGTGGGTATGGAGGAGGGCGAGGAGGGGGAGGAGGTGGCT
ATGGAAGGGACGACCGAGGAGGAGGTGGAGGATATAGGGGTGGCGGAGGA
GGAAGGGGAGGGGGAGGAGGGTACGGAGGAGGTTACGGAAGGTACGATGA
TAGGGGCGGACGTAGGGGCGACAGGCGCGACCGGCCGTATTAAATACACA
CAACAGCCTTTTTACGGAAAAAGGTCGAGTAAATGAGCACGCTATACAAG
ATATTTACGAAAGAACCAATCAGAAAGGAAGGGGGAAAAGGGGATACATT
CAACACTCAACAACTTACGTGACACGGATCTCTCGCCCTTGAAGAACTTC
TTGCTCA
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Coding sequence (CDS) from alignment at chr7:806547..809153-

>NO07G02850.2 ID=NO07G02850.2|Name=NO07G02850.2|organism=Nannochloropsis oceanica|type=CDS|length=765bp|location=Sequence derived from alignment at chr7:806547..809153- (Nannochloropsis oceanica)
ATGAATATTAACTTTCCATTCTTATCCGCACAGACATTGGTGGCGGGTGG
GGTGGAGACCGTGGCAGATTTGGCGGGGCTGGATTATCAAGACTTGAGCA
AATATGATATTTCCCGGGAAATTCGGGACAAGCTGGGTCGCGTGTTGGAC
AAATTGCGTGTTAACGGCACTATCTTTATCTCTGGGCTCAGTCCCTCAAC
AACTGAAGCCGAGATTGCGGAATACTTCGGCCAGATTGGTATTGTCAAGA
AGATGAAGCAAAAGCGAGGCTACCCGGACCAATGGCCTTACAAAATCAAA
ATGTACCGCGACGAATCGGGTAAAAGCAAAGGCGAATGCGTGCTCACGTA
CGAAGAGCCTAATTCTGCCCATGCTTCGATCTCATTTTTCCACGGCACGG
AACTGGCTGGGAAGACGTTGAAGGTGAGTATGGTGTCATACGGGGAGGAT
GAGGAGGGAGGAAGTGGAGGAGGGTACTCCGGAGGAGGGGGGGTTACGGT
GGTGGAGGAGGGGGATACGGAGGAGGGAGGGGCGGAGGGGGTGGGTATGG
AGGAGGGCGAGGAGGGGGAGGAGGTGGCTATGGAAGGGACGACCGAGGAG
GAGGTGGAGGATATAGGGGTGGCGGAGGAGGAAGGGGAGGGGGAGGAGGG
TACGGAGGAGGTTACGGAAGGTACGATGATAGGGGCGGACGTAGGGGCGA
CAGGCGCGACCGGCCGTATTAAATACACACAACAGCCTTTTTACGGAAAA
AGGTCGAGTAAATGA
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Synonyms
Publications