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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:1209060..1212456 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G04310.1 vs.
Match: XP_005855409.1 (LL-diaminopimelate aminotransferase [Nannochloropsis gaditana CCMP526]; EKU20940.1 LL-diaminopimelate aminotransferase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 754.6 bits (1947), Expect = 1.800e-214 Identity = 375/448 (83.71%), Postives = 405/448 (90.40%), Query Frame = 0
Query: 1 MMRQTLLLALALLATSSHAFLAPLPTATATRARSAG-VMHMSGVERNPNFDKLVGGYLFPEIGRRRTAFLEANPTAKIISLGIGDTTQPIPPHILSGLVQGAARLGTPEGYSGYGDEKGAGMLREKIAAKLYGNRITADEVFVSDGAKCDIGRLQMMFGQNVVTAVQDPSYPVYVDTAVIMGQTGGIDEESRQFDGIVYMPCTPSNDFFPDLTKLSKRPDVIYFCSPNNPTGVSATRAQLESLVAYARAQGSIIVFDAAYAPFIRDPALPKSIFEIEGALECAIEVNSFSKYAGFTGVRLGWTVVPKQLKFKDGSSVHSDFNRIMGTAFNGASNVVQPGGLAILDDEGMAEIQTLINYYLANAAKLRQTVEAMGYKAYGGDNGPYVYVDLGGKSSWDMFSEILEKAQIVTTPGAGFGPGGEGFLRLSAFASKENVEEACERLQKVMAK 448
MMRQ LLA+AL ATSS AFL P P +R V+ MSGVERNPNF KL+GGYLFPEI RRR+AFLEANP AKIISLGIGDTTQPIPPHILSGLV GA++LGTP GYSGYG ++G LREKIA+ LYGNRI D+VFVSDGAKCDIGRLQ+MFG+NVVTAVQDPSYPVYVDTAVIMGQTG I+E+SRQFDGIVYMPC P NDFFPDL L +RPDVIYFCSPNNPTGV+ATR QLE+LV+YAR QGS+IVFDAAYAPFIRDP+LPKSIFEIEGALECAIEVNSFSKYAGFTGVRLGWTVVPKQLKF+DGSS+H+DFNR+M T FNGASN+VQ GGLAILD EG+AEIQTLI+YYLANAAKLR TVEAMGYKAYGGDNGPYVYVDLGGKSSWD+FSEILEKAQIVTTPGAGFGPGGEGFLRLSAFASKENV+EACERLQKVM K
Sbjct: 1 MMRQVALLAVALCATSSLAFLTPPPRPVRSRCGVRDRVLQMSGVERNPNFGKLMGGYLFPEIARRRSAFLEANPEAKIISLGIGDTTQPIPPHILSGLVHGASKLGTPPGYSGYGPDQGVKDLREKIASTLYGNRIDPDDVFVSDGAKCDIGRLQVMFGKNVVTAVQDPSYPVYVDTAVIMGQTGLINEQSRQFDGIVYMPCNPGNDFFPDLAALPQRPDVIYFCSPNNPTGVAATRPQLEALVSYAREQGSVIVFDAAYAPFIRDPSLPKSIFEIEGALECAIEVNSFSKYAGFTGVRLGWTVVPKQLKFRDGSSMHADFNRMMSTTFNGASNIVQDGGLAILDKEGLAEIQTLISYYLANAAKLRATVEAMGYKAYGGDNGPYVYVDLGGKSSWDVFSEILEKAQIVTTPGAGFGPGGEGFLRLSAFASKENVDEACERLQKVMVK 448
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G04310.1 ID=NO06G04310.1|Name=NO06G04310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1652bp AATAGGTAGCATCTTTTTGTTTTCATACTTTCCGCGGTCTTCATGATGCG ACAAACCCTTCTCCTGGCCCTGGCCCTCCTCGCGACCTCCTCCCATGCCT TCCTGGCGCCCTTACCTACTGCTACTGCCACCCGCGCCCGCAGCGCTGGT GTCATGCACATGTCCGGCGTGGAGCGCAATCCGAACTTTGACAAGCTTGT CGGCGGTTACTTATTCCCCGAGATCGGCCGTCGACGCACTGCGTTTTTGG AGGCCAACCCAACCGCCAAGATTATCTCTCTGGGCATTGGCGACACGACC CAGCCGATCCCTCCTCACATCCTGTCAGGCCTCGTACAGGGGGCTGCAAG GCTCGGCACGCCCGAGGGCTATTCCGGGTACGGCGACGAGAAGGGCGCGG GCATGCTTCGTGAGAAGATTGCGGCCAAGCTGTACGGAAACCGGATCACG GCGGACGAGGTGTTTGTCTCGGACGGGGCCAAGTGCGACATCGGGCGGCT GCAGATGATGTTCGGACAGAACGTGGTGACGGCCGTGCAGGACCCGTCGT ATCCGGTGTATGTGGACACCGCCGTGATTATGGGGCAGACGGGGGGCATC GACGAGGAGAGCAGGCAATTCGATGGCATCGTCTACATGCCCTGCACCCC CTCCAATGACTTCTTCCCCGACCTGACCAAGCTCTCCAAGCGCCCGGACG TGATCTACTTCTGCTCCCCCAACAACCCCACTGGCGTCTCAGCCACCCGC GCCCAGCTCGAGTCCCTCGTCGCCTATGCACGAGCGCAGGGGTCCATTAT CGTCTTTGATGCCGCCTACGCGCCCTTTATCCGCGACCCGGCCCTCCCCA AGTCCATATTCGAGATTGAGGGCGCGCTGGAGTGTGCCATAGAGGTCAAC TCCTTTTCCAAGTACGCGGGCTTTACGGGAGTGCGCTTGGGCTGGACCGT CGTGCCTAAGCAGCTTAAGTTCAAGGACGGGAGCTCGGTGCACAGCGACT TCAACCGTATTATGGGCACGGCCTTCAACGGGGCCTCCAACGTGGTGCAG CCAGGTGGCCTCGCTATCCTCGACGACGAAGGGATGGCCGAGATTCAGAC CCTCATCAACTACTACCTGGCAAATGCGGCCAAACTCCGGCAGACGGTGG AGGCCATGGGTTACAAGGCATACGGTGGTGACAACGGCCCATACGTGTAC GTGGATTTGGGCGGTAAGAGCAGCTGGGACATGTTCTCCGAGATTTTGGA GAAGGCCCAGATCGTCACCACCCCGGGCGCTGGATTCGGCCCGGGAGGGG AGGGTTTCTTGCGCCTGAGTGCCTTTGCCTCCAAAGAAAACGTTGAGGAG GCGTGCGAGCGCTTGCAAAAGGTCATGGCCAAAAGCCAGTGAGCGGGGGG GTTGGAGTGTGAAAGGCGAAGGGACACGTCCGTGAGGAGGGATGTGGACT GTTGTTGCATCGAGCGTGGAAAAAGCAGTAAGAAAATACCTTGATTGAGC CTGAAAGTAATACCCTGATTGCAAAATGTCATGGTTAAGAGCCAGTGAGA GGGGGGGGGGGTTGAGGAGGGGCTTGGACTTTTGTTGCGAACTTGGAAAC AAACAAAAAGAAAATACCTTGATAAATCCTTAAAGTAACACCCTGAACGA AG back to topprotein sequence of NO06G04310.1 >NO06G04310.1-protein ID=NO06G04310.1-protein|Name=NO06G04310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp MMRQTLLLALALLATSSHAFLAPLPTATATRARSAGVMHMSGVERNPNFD KLVGGYLFPEIGRRRTAFLEANPTAKIISLGIGDTTQPIPPHILSGLVQG AARLGTPEGYSGYGDEKGAGMLREKIAAKLYGNRITADEVFVSDGAKCDI GRLQMMFGQNVVTAVQDPSYPVYVDTAVIMGQTGGIDEESRQFDGIVYMP CTPSNDFFPDLTKLSKRPDVIYFCSPNNPTGVSATRAQLESLVAYARAQG SIIVFDAAYAPFIRDPALPKSIFEIEGALECAIEVNSFSKYAGFTGVRLG WTVVPKQLKFKDGSSVHSDFNRIMGTAFNGASNVVQPGGLAILDDEGMAE IQTLINYYLANAAKLRQTVEAMGYKAYGGDNGPYVYVDLGGKSSWDMFSE ILEKAQIVTTPGAGFGPGGEGFLRLSAFASKENVEEACERLQKVMAKSQ* back to topmRNA from alignment at chr6:1209060..1212456+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G04310.1 ID=NO06G04310.1|Name=NO06G04310.1|organism=Nannochloropsis oceanica|type=mRNA|length=3397bp|location=Sequence derived from alignment at chr6:1209060..1212456+ (Nannochloropsis oceanica) AATAGGTAGCATCTTTTTGTTTTCATACTTTCCGCGGTCTTCATGATGCG
ACAAACCCTTCTCCTGGCCCTGGCCCTCCTCGCGACCTCCTCCCATGCCT
TCCTGGCGCCCTTACCTACTGCTACTGCCACCCGCGCCCGCAGCGCTGGT
GTCATGCACATGTCCGGCGTGGAGCGCAATCCGAACTTTGACAAGCTTGT
CGGCGGGTACGTATATCTTTACAAAGTGTGATGTCTGTGCTCGAACCATC
CGCTCGAAAACCGATTTGATTCCTCACCTTTTTCCGACATCCCGTAGCCT
TGGTGCGCATAAAATGTTTCGCCTGTCCATGTTTCTTTGTTTTTCGTACG
CTGCTTATTTTGTCCTTCTGTAATGTTTCCAAGGTGGTCATCCTTATAAC
CCTCCGCCGTACCTCGCTCGCCTTCCTTTCCCACTCATTTTCTCCGTTCC
CCCTCTACTCCCCCCTGTGAACCCCCTTCCCTCAGTTACTTATTCCCCGA
GATCGGCCGTCGACGCACTGCGTTTTTGGAGGCCAACCCAACCGCCAAGA
TTATCTCTCTGGGCATTGGCGACACGACCCAGCCGATCCCTCCTCACATC
CTGTCAGGCCTCGTACAGGGGGCTGCAAGGCTCGGCACGCCCGAGGGCTA
TTCCGGGTAAGAAGAGAGAGAGCGAGCTGCACGAGGAGAGGGACTGAGTG
GTAGAAGGGCACCATGGGTTCTTTTTCGAGTCCTCTCGAGTGGAGGAAAA
GGGGCAGAGAGGCTTTTGGAAAATTGCATTGCTGAAAAGTTGCAGATCAA
GATGAGGGCTTTTGTCACTGTTCACCCTTGCTTTTTATTCTCCCCCCTCC
CTCCTTCGCTTGGTGCCTTACCCAGGTACGGCGACGAGAAGGGCGCGGGC
ATGCTTCGTGAGAAGATTGCGGCCAAGCTGTACGGAAACCGGATCACGGC
GGACGAGGTGTTTGTCTCGGACGGGGCCAAGTGCGACATCGGGCGGCTGC
AGATGATGTTCGGACAGAACGTGGTGACGGCCGTGCAGGACCCGTCGTAT
CCGGTGTATGTGGACACCGCCGTGATTATGGGGCAGACGGGGGGCATCGA
CGAGGAGAGCAGGCAATTCGATGGTGCGTGTGTTGGCGGCTGTATTATTA
TTGTTATGATGATTGTGTCGTACATGTGGCTAAGATCATTTGTAGTGATT
AGTGCAAGATGCTATTATAATTATCTCTCTGTATATATGGCGAGTAGTAG
TAGTACAAGTAGTCGTGGAGGGAGAGGAAGGAGGATTGCTGCCTGTCTCA
GCGCAGCCCCCCCCCTTCACTGACTCTCCTTTTCTCCTCCCCCCCCCCCC
TTCACTGACTCTCCTCTTCTCCTCCCCCCCCTTCTCCTCCTCTCTCAGGC
ATCGTCTACATGCCCTGCACCCCCTCCAATGACTTCTTCCCCGACCTGAC
CAAGCTCTCCAAGCGCCCGGACGTGATCTACTTCTGCTCCCCCAACAACC
CCACTGGCGTCTCAGCCACCCGCGCCCAGCTCGAGTCCCTCGTCGCCTAT
GCACGAGCGCAGGGGTCCATTATCGTCTTTGATGCCGCCTACGCGCCCTT
TATCCGCGACCCGGCCCTCCCCAAGTCCATATTCGAGATTGAGGGCGCGC
TGGAGTGTGCCATAGAGGTCAACTCCTTTTCCAAGGTGAAGGGGGGGGGA
AGGAGGGAAGGACAGGGGCGGAGGGTGAAGAAGGAGATGGGAGTGAAGGA
GAGGGGAGGAAGTGTTTCTCACCTTCCGGTGATGCCATGTGCTTCACCTG
TGATTTTCTCACCTCAGCCTTCTCTCCCTCCTTTCTCGCCCCCCCCCTCC
CTTCCCTCCTCTCTCCCTTCATCGTGTTGCAGTACGCGGGCTTTACGGGA
GTGCGCTTGGGCTGGACCGTCGTGCCTAAGCAGCTTAAGTTCAAGGACGG
GAGCTCGGTACGTGTTAGGCACGAGGGGAAGAAGGGAGGGATGGAGGGAG
GGACAAGAGGAGTGAGGGAAGGAAGGAAGGAAGGAAGGAATGCGAATGGG
AAAGAAGGGAAGGAAGCGATTTTGTATGTGGAGTTGGCGGGGCAAGGAGC
TTGGGAAGGCATGTCAGGTGGACTTGAATGGAATGTGAGGTGGACTTAGA
AGGCATGGGAGGTGGGATTGGAAAGTCGGAGTAGCAGCACTGAGGCCTCC
TGCTCTGACACTCATTCGCTCTCCCTCCCTGCCTCCTTCCTTCCCTCCCT
TCCTTCCTCCCTTCCTTCCTCCCAGGTGCACAGCGACTTCAACCGTATTA
TGGGCACGGCCTTCAACGGGGCCTCCAACGTGGTGCAGCCAGGTGGCCTC
GCTATCCTCGACGACGAAGGGATGGCCGAGATTCAGGTAAGGAAAAAGGC
AGGGAAGGAGGGAGGGAGGGAAGGAGGAAGGGAGGGGAGGAGGGAGCAGA
AGGCCTCTATGCAGGTGGAGTAGCGTAAGAGACTACGAGTTGAAAAGCAG
CTTTCTCTCGTGCTTCAATACGCCTCGACACATTTCAATATTCCTCAACA
TGTCTCAATGGCTCGCCTGAACCTCAGTCCCGCCCTCAAACGTGCCGCCT
ACACCCCCTGATGAATGCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCC
AGACCCTCATCAACTACTACCTGGCAAATGCGGCCAAACTCCGGCAGACG
GTGGAGGCCATGGGTTACAAGGTACGTCGATGTGCTAAAGGGAGGGAGCG
AGGAGAAGTGGGAAGGAATGAAGGACGCCAATCTCGCATCAAACACAAGC
ACGAGAGAGGCGCTGCGAGGCTGGGTCTTGTAAGGGAGAAAATCCAATGC
GGCCTCGTCATTCACTTGTGTCATTATTCTCCTCTGCTTCCCTCCCCACT
TTTCGTGCCCAGGCATACGGTGGTGACAACGGCCCATACGTGTACGTGGA
TTTGGGCGGTAAGAGCAGCTGGGACATGTTCTCCGAGATTTTGGAGAAGG
CCCAGATCGTCACCACCCCGGGCGCTGGATTCGGCCCGGGAGGGGAGGGT
TTCTTGCGCCTGAGTGCCTTTGCCTCCAAAGAAAACGTTGAGGAGGCGTG
CGAGCGCTTGCAAAAGGTCATGGCCAAAAGCCAGTGAGCGGGGGGGTTGG
AGTGTGAAAGGCGAAGGGACACGTCCGTGAGGAGGGATGTGGACTGTTGT
TGCATCGAGCGTGGAAAAAGCAGTAAGAAAATACCTTGATTGAGCCTGAA
AGTAATACCCTGATTGCAAAATGTCATGGTTAAGAGCCAGTGAGAGGGGG
GGGGGGTTGAGGAGGGGCTTGGACTTTTGTTGCGAACTTGGAAACAAACA
AAAAGAAAATACCTTGATAAATCCTTAAAGTAACACCCTGAACGAAG back to topCoding sequence (CDS) from alignment at chr6:1209060..1212456+ >NO06G04310.1 ID=NO06G04310.1|Name=NO06G04310.1|organism=Nannochloropsis oceanica|type=CDS|length=1350bp|location=Sequence derived from alignment at chr6:1209060..1212456+ (Nannochloropsis oceanica) ATGATGCGACAAACCCTTCTCCTGGCCCTGGCCCTCCTCGCGACCTCCTC CCATGCCTTCCTGGCGCCCTTACCTACTGCTACTGCCACCCGCGCCCGCA GCGCTGGTGTCATGCACATGTCCGGCGTGGAGCGCAATCCGAACTTTGAC AAGCTTGTCGGCGGTTACTTATTCCCCGAGATCGGCCGTCGACGCACTGC GTTTTTGGAGGCCAACCCAACCGCCAAGATTATCTCTCTGGGCATTGGCG ACACGACCCAGCCGATCCCTCCTCACATCCTGTCAGGCCTCGTACAGGGG GCTGCAAGGCTCGGCACGCCCGAGGGCTATTCCGGGTACGGCGACGAGAA GGGCGCGGGCATGCTTCGTGAGAAGATTGCGGCCAAGCTGTACGGAAACC GGATCACGGCGGACGAGGTGTTTGTCTCGGACGGGGCCAAGTGCGACATC GGGCGGCTGCAGATGATGTTCGGACAGAACGTGGTGACGGCCGTGCAGGA CCCGTCGTATCCGGTGTATGTGGACACCGCCGTGATTATGGGGCAGACGG GGGGCATCGACGAGGAGAGCAGGCAATTCGATGGCATCGTCTACATGCCC TGCACCCCCTCCAATGACTTCTTCCCCGACCTGACCAAGCTCTCCAAGCG CCCGGACGTGATCTACTTCTGCTCCCCCAACAACCCCACTGGCGTCTCAG CCACCCGCGCCCAGCTCGAGTCCCTCGTCGCCTATGCACGAGCGCAGGGG TCCATTATCGTCTTTGATGCCGCCTACGCGCCCTTTATCCGCGACCCGGC CCTCCCCAAGTCCATATTCGAGATTGAGGGCGCGCTGGAGTGTGCCATAG AGGTCAACTCCTTTTCCAAGTACGCGGGCTTTACGGGAGTGCGCTTGGGC TGGACCGTCGTGCCTAAGCAGCTTAAGTTCAAGGACGGGAGCTCGGTGCA CAGCGACTTCAACCGTATTATGGGCACGGCCTTCAACGGGGCCTCCAACG TGGTGCAGCCAGGTGGCCTCGCTATCCTCGACGACGAAGGGATGGCCGAG ATTCAGACCCTCATCAACTACTACCTGGCAAATGCGGCCAAACTCCGGCA GACGGTGGAGGCCATGGGTTACAAGGCATACGGTGGTGACAACGGCCCAT ACGTGTACGTGGATTTGGGCGGTAAGAGCAGCTGGGACATGTTCTCCGAG ATTTTGGAGAAGGCCCAGATCGTCACCACCCCGGGCGCTGGATTCGGCCC GGGAGGGGAGGGTTTCTTGCGCCTGAGTGCCTTTGCCTCCAAAGAAAACG TTGAGGAGGCGTGCGAGCGCTTGCAAAAGGTCATGGCCAAAAGCCAGTGA back to top
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