NO06G02530.1, NO06G02530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02530.1
Unique NameNO06G02530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1605
Alignment locationchr6:712447..714051 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:712447..714051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02530.1 vs.
Match: EWM26268.1 (glutamyl-trna amidotransferase subunit a [Nannochloropsis gaditana])

HSP 1 Score: 717.2 bits (1850), Expect = 3.700e-203
Identity = 369/490 (75.31%), Postives = 425/490 (86.73%), Query Frame = 0 
Query:   44 SPNSIHDLVESFRRGQASVTGVTKETLQRIEQQDGAVGAFLALSGDHALAQAKILDTKLAMKDTATAVLPLLGLPLAVKDNICTAGVPTTAASRVLQGYIPSYDATAVVRLKAAGCILIGKTNMDEFGMGSTTESSGYHVTRNPRDLTRSPGGSSGGSAAAVASGMVLAALGTDTGGSIRQPASWTGTVGLKPTYGRVSRYGLMAYGSSTDVIGPLTQNVMDAARVLAVLAGEDHAHDTTTSQAPELQDFVGAVREMEGKGSKPLAGVKVALVKETLHSRVEEGVASAVRKAVNLLERLGATVMEVSIPYLDAHCASYYVNVLSEASANLARYDGVRYGLRPKGAESAKTVMLGSRGSGFGEEVKQRILLGTFSLSAGYSDAYYLKSQQLRSVLSQSFSESFGVADVLVCPTSPTVAYPLGKAAESKVDMYADDLFTVPASLAGLPAISLPITGGREGESS---LPVGLQIIGQRFAEAQILQVAKALEL 531
            S  +IHD+VE  ++GQ SV  VTK+TL +IE +D A+GAFL LSGD A+++A+ LD KLA ++  T+ +PLLGLP+A+KDNICTAG+PTTA S+VLQGY+PSYDATAV RL+AAG +L+GKTN+DEFGMGSTTESSGYHVTRNPRDL+RSPGGSSGGSAAAVASGMVLAALGTDTGGSIRQPASWTGTVGLKPTYGRVSR+GL+AYGSSTDVIGPLT  VMD+AR+L+ LAG D  HD TTS AP  +D+V AV+E E +G +PLAG ++ L++ETL +RVE+GV++ V+ AV  LE LGA +MEVSIPYLDAHCASYYVNVLSEASANLARYDGVRYGLRP+ A SAKTVMLGSRG GFGEEVKQRILLGTFSLSAGY+DAYYLKSQQLRSVLS++F  +F  ADVL+ PT+PTVAYPLGKAA SKVDMYADDLFTVPASLAGLPAISLP+       +S   LPVGLQIIGQRFAEA ILQVA+ LEL
Sbjct:   46 SSTTIHDMVERIQQGQISVAEVTKQTLLQIEAEDRAIGAFLTLSGDQAMSEARALDEKLAGREPGTSTMPLLGLPMAIKDNICTAGIPTTAGSKVLQGYVPSYDATAVARLRAAGAVLVGKTNLDEFGMGSTTESSGYHVTRNPRDLSRSPGGSSGGSAAAVASGMVLAALGTDTGGSIRQPASWTGTVGLKPTYGRVSRHGLLAYGSSTDVIGPLTGTVMDSARLLSALAGADPLHDATTSLAPAAEDYVSAVKEAETRGERPLAGTRIGLIRETLQTRVEDGVSTVVQDAVARLEGLGAEIMEVSIPYLDAHCASYYVNVLSEASANLARYDGVRYGLRPRDAGSAKTVMLGSRGEGFGEEVKQRILLGTFSLSAGYADAYYLKSQQLRSVLSEAFKSAFETADVLISPTAPTVAYPLGKAAGSKVDMYADDLFTVPASLAGLPAISLPVGKAPSSSASSDFLPVGLQIIGQRFAEASILQVARILEL 535
The following BLAST results are available for this feature:
BLAST of NO06G02530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26268.13.700e-20375.31glutamyl-trna amidotransferase subunit a [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02530NO06G02530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02530.1NO06G02530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02530.1.cds1NO06G02530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02530.1 ID=NO06G02530.1|Name=NO06G02530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1605bp
ATGCGTCCATCACTTTATCCACGACTCCTGCTTTTCCTTGCCGTCGCCGT
CCACACGACAACCGCCTTCCACCCTCCACCAAAACTCCGCCAGATTTCAA
GAAATCCTTCGATCCTCCTCTCTGCTTCCTCCCCCAACTCCATCCATGAT
CTAGTCGAGAGTTTCCGCCGAGGCCAAGCGAGCGTCACCGGCGTAACCAA
GGAAACCTTGCAGCGGATCGAGCAACAAGACGGGGCAGTAGGGGCCTTTC
TCGCCTTGAGTGGAGATCACGCCCTCGCGCAAGCGAAAATACTCGACACT
AAACTTGCCATGAAGGATACAGCTACCGCGGTATTGCCCTTATTAGGCCT
ACCCTTGGCAGTCAAGGATAACATCTGTACCGCGGGCGTTCCCACTACTG
CAGCCTCCCGTGTCTTGCAAGGCTACATCCCATCCTACGACGCTACAGCC
GTCGTCCGCCTCAAGGCCGCCGGCTGCATATTGATTGGAAAGACAAACAT
GGACGAGTTCGGAATGGGCTCCACGACGGAATCCTCTGGTTATCACGTCA
CGCGCAACCCTCGCGACCTCACCCGTTCTCCCGGTGGTTCCTCTGGAGGC
TCGGCCGCAGCGGTGGCAAGTGGCATGGTGCTCGCCGCACTAGGCACGGA
CACAGGGGGGTCGATTCGACAGCCCGCATCGTGGACGGGGACGGTAGGAT
TGAAGCCTACGTATGGGAGAGTGTCAAGGTACGGGTTGATGGCGTATGGG
TCGAGTACGGATGTGATAGGTCCCTTGACACAAAATGTAATGGATGCTGC
TCGAGTGCTTGCCGTGCTTGCAGGTGAGGATCATGCGCACGATACTACCA
CGAGTCAAGCGCCTGAGTTGCAGGATTTTGTGGGGGCTGTGCGGGAGATG
GAGGGGAAGGGAAGTAAGCCACTAGCTGGGGTGAAGGTGGCATTGGTGAA
GGAAACACTGCACAGTAGGGTGGAGGAGGGAGTGGCATCGGCGGTACGAA
AGGCGGTGAATCTGCTGGAGCGATTGGGAGCGACAGTGATGGAGGTGTCG
ATTCCTTATTTAGACGCGCATTGTGCTTCCTACTATGTGAATGTGTTGTC
GGAGGCCAGTGCGAATCTGGCGCGGTACGACGGGGTGCGGTATGGGTTGA
GGCCAAAGGGGGCAGAGAGCGCCAAGACGGTCATGTTGGGGAGTAGAGGA
AGCGGATTTGGGGAGGAGGTAAAGCAGAGAATATTGCTGGGGACGTTCTC
GTTGAGCGCCGGTTATTCAGACGCGTACTATTTGAAGAGCCAGCAGTTGC
GGTCGGTTTTGTCGCAGTCATTCAGCGAGAGTTTTGGGGTGGCGGATGTG
TTGGTGTGTCCGACATCGCCGACAGTGGCGTATCCATTGGGGAAGGCGGC
GGAAAGTAAGGTTGATATGTATGCAGACGATTTGTTCACGGTCCCTGCCA
GCCTGGCGGGACTGCCGGCAATCAGCTTACCTATCACGGGAGGGAGGGAG
GGGGAGTCGTCGCTTCCGGTGGGATTGCAAATTATCGGGCAGCGATTTGC
TGAAGCACAAATTTTGCAGGTGGCAAAGGCACTAGAACTGGCGCAAGGGA
GCTAG
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protein sequence of NO06G02530.1

>NO06G02530.1-protein ID=NO06G02530.1-protein|Name=NO06G02530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=535bp
MRPSLYPRLLLFLAVAVHTTTAFHPPPKLRQISRNPSILLSASSPNSIHD
LVESFRRGQASVTGVTKETLQRIEQQDGAVGAFLALSGDHALAQAKILDT
KLAMKDTATAVLPLLGLPLAVKDNICTAGVPTTAASRVLQGYIPSYDATA
VVRLKAAGCILIGKTNMDEFGMGSTTESSGYHVTRNPRDLTRSPGGSSGG
SAAAVASGMVLAALGTDTGGSIRQPASWTGTVGLKPTYGRVSRYGLMAYG
SSTDVIGPLTQNVMDAARVLAVLAGEDHAHDTTTSQAPELQDFVGAVREM
EGKGSKPLAGVKVALVKETLHSRVEEGVASAVRKAVNLLERLGATVMEVS
IPYLDAHCASYYVNVLSEASANLARYDGVRYGLRPKGAESAKTVMLGSRG
SGFGEEVKQRILLGTFSLSAGYSDAYYLKSQQLRSVLSQSFSESFGVADV
LVCPTSPTVAYPLGKAAESKVDMYADDLFTVPASLAGLPAISLPITGGRE
GESSLPVGLQIIGQRFAEAQILQVAKALELAQGS*
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mRNA from alignment at chr6:712447..714051-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02530.1 ID=NO06G02530.1|Name=NO06G02530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1605bp|location=Sequence derived from alignment at chr6:712447..714051- (Nannochloropsis oceanica)
ATGCGTCCATCACTTTATCCACGACTCCTGCTTTTCCTTGCCGTCGCCGT
CCACACGACAACCGCCTTCCACCCTCCACCAAAACTCCGCCAGATTTCAA
GAAATCCTTCGATCCTCCTCTCTGCTTCCTCCCCCAACTCCATCCATGAT
CTAGTCGAGAGTTTCCGCCGAGGCCAAGCGAGCGTCACCGGCGTAACCAA
GGAAACCTTGCAGCGGATCGAGCAACAAGACGGGGCAGTAGGGGCCTTTC
TCGCCTTGAGTGGAGATCACGCCCTCGCGCAAGCGAAAATACTCGACACT
AAACTTGCCATGAAGGATACAGCTACCGCGGTATTGCCCTTATTAGGCCT
ACCCTTGGCAGTCAAGGATAACATCTGTACCGCGGGCGTTCCCACTACTG
CAGCCTCCCGTGTCTTGCAAGGCTACATCCCATCCTACGACGCTACAGCC
GTCGTCCGCCTCAAGGCCGCCGGCTGCATATTGATTGGAAAGACAAACAT
GGACGAGTTCGGAATGGGCTCCACGACGGAATCCTCTGGTTATCACGTCA
CGCGCAACCCTCGCGACCTCACCCGTTCTCCCGGTGGTTCCTCTGGAGGC
TCGGCCGCAGCGGTGGCAAGTGGCATGGTGCTCGCCGCACTAGGCACGGA
CACAGGGGGGTCGATTCGACAGCCCGCATCGTGGACGGGGACGGTAGGAT
TGAAGCCTACGTATGGGAGAGTGTCAAGGTACGGGTTGATGGCGTATGGG
TCGAGTACGGATGTGATAGGTCCCTTGACACAAAATGTAATGGATGCTGC
TCGAGTGCTTGCCGTGCTTGCAGGTGAGGATCATGCGCACGATACTACCA
CGAGTCAAGCGCCTGAGTTGCAGGATTTTGTGGGGGCTGTGCGGGAGATG
GAGGGGAAGGGAAGTAAGCCACTAGCTGGGGTGAAGGTGGCATTGGTGAA
GGAAACACTGCACAGTAGGGTGGAGGAGGGAGTGGCATCGGCGGTACGAA
AGGCGGTGAATCTGCTGGAGCGATTGGGAGCGACAGTGATGGAGGTGTCG
ATTCCTTATTTAGACGCGCATTGTGCTTCCTACTATGTGAATGTGTTGTC
GGAGGCCAGTGCGAATCTGGCGCGGTACGACGGGGTGCGGTATGGGTTGA
GGCCAAAGGGGGCAGAGAGCGCCAAGACGGTCATGTTGGGGAGTAGAGGA
AGCGGATTTGGGGAGGAGGTAAAGCAGAGAATATTGCTGGGGACGTTCTC
GTTGAGCGCCGGTTATTCAGACGCGTACTATTTGAAGAGCCAGCAGTTGC
GGTCGGTTTTGTCGCAGTCATTCAGCGAGAGTTTTGGGGTGGCGGATGTG
TTGGTGTGTCCGACATCGCCGACAGTGGCGTATCCATTGGGGAAGGCGGC
GGAAAGTAAGGTTGATATGTATGCAGACGATTTGTTCACGGTCCCTGCCA
GCCTGGCGGGACTGCCGGCAATCAGCTTACCTATCACGGGAGGGAGGGAG
GGGGAGTCGTCGCTTCCGGTGGGATTGCAAATTATCGGGCAGCGATTTGC
TGAAGCACAAATTTTGCAGGTGGCAAAGGCACTAGAACTGGCGCAAGGGA
GCTAG
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Coding sequence (CDS) from alignment at chr6:712447..714051-

>NO06G02530.1 ID=NO06G02530.1|Name=NO06G02530.1|organism=Nannochloropsis oceanica|type=CDS|length=1605bp|location=Sequence derived from alignment at chr6:712447..714051- (Nannochloropsis oceanica)
ATGCGTCCATCACTTTATCCACGACTCCTGCTTTTCCTTGCCGTCGCCGT
CCACACGACAACCGCCTTCCACCCTCCACCAAAACTCCGCCAGATTTCAA
GAAATCCTTCGATCCTCCTCTCTGCTTCCTCCCCCAACTCCATCCATGAT
CTAGTCGAGAGTTTCCGCCGAGGCCAAGCGAGCGTCACCGGCGTAACCAA
GGAAACCTTGCAGCGGATCGAGCAACAAGACGGGGCAGTAGGGGCCTTTC
TCGCCTTGAGTGGAGATCACGCCCTCGCGCAAGCGAAAATACTCGACACT
AAACTTGCCATGAAGGATACAGCTACCGCGGTATTGCCCTTATTAGGCCT
ACCCTTGGCAGTCAAGGATAACATCTGTACCGCGGGCGTTCCCACTACTG
CAGCCTCCCGTGTCTTGCAAGGCTACATCCCATCCTACGACGCTACAGCC
GTCGTCCGCCTCAAGGCCGCCGGCTGCATATTGATTGGAAAGACAAACAT
GGACGAGTTCGGAATGGGCTCCACGACGGAATCCTCTGGTTATCACGTCA
CGCGCAACCCTCGCGACCTCACCCGTTCTCCCGGTGGTTCCTCTGGAGGC
TCGGCCGCAGCGGTGGCAAGTGGCATGGTGCTCGCCGCACTAGGCACGGA
CACAGGGGGGTCGATTCGACAGCCCGCATCGTGGACGGGGACGGTAGGAT
TGAAGCCTACGTATGGGAGAGTGTCAAGGTACGGGTTGATGGCGTATGGG
TCGAGTACGGATGTGATAGGTCCCTTGACACAAAATGTAATGGATGCTGC
TCGAGTGCTTGCCGTGCTTGCAGGTGAGGATCATGCGCACGATACTACCA
CGAGTCAAGCGCCTGAGTTGCAGGATTTTGTGGGGGCTGTGCGGGAGATG
GAGGGGAAGGGAAGTAAGCCACTAGCTGGGGTGAAGGTGGCATTGGTGAA
GGAAACACTGCACAGTAGGGTGGAGGAGGGAGTGGCATCGGCGGTACGAA
AGGCGGTGAATCTGCTGGAGCGATTGGGAGCGACAGTGATGGAGGTGTCG
ATTCCTTATTTAGACGCGCATTGTGCTTCCTACTATGTGAATGTGTTGTC
GGAGGCCAGTGCGAATCTGGCGCGGTACGACGGGGTGCGGTATGGGTTGA
GGCCAAAGGGGGCAGAGAGCGCCAAGACGGTCATGTTGGGGAGTAGAGGA
AGCGGATTTGGGGAGGAGGTAAAGCAGAGAATATTGCTGGGGACGTTCTC
GTTGAGCGCCGGTTATTCAGACGCGTACTATTTGAAGAGCCAGCAGTTGC
GGTCGGTTTTGTCGCAGTCATTCAGCGAGAGTTTTGGGGTGGCGGATGTG
TTGGTGTGTCCGACATCGCCGACAGTGGCGTATCCATTGGGGAAGGCGGC
GGAAAGTAAGGTTGATATGTATGCAGACGATTTGTTCACGGTCCCTGCCA
GCCTGGCGGGACTGCCGGCAATCAGCTTACCTATCACGGGAGGGAGGGAG
GGGGAGTCGTCGCTTCCGGTGGGATTGCAAATTATCGGGCAGCGATTTGC
TGAAGCACAAATTTTGCAGGTGGCAAAGGCACTAGAACTGGCGCAAGGGA
GCTAG
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Synonyms
Publications