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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:1244373..1246126 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G04790.1 vs.
Match: EWM27920.1 (Tetratricopeptide-like helical [Nannochloropsis gaditana]) HSP 1 Score: 449.5 bits (1155), Expect = 1.600e-122 Identity = 286/578 (49.48%), Postives = 363/578 (62.80%), Query Frame = 0
Query: 5 ATLVRRSS-RRRPLPFSSTAAAHRSQAPLPSASITILRGLANIPSHTMPPPRTPPPVPDANVEGLHQRLLMHELAREKEAADAWKANVVAEALATLRGEGGPRKSKGSIAHRQALLTLGHYGSSLEPEDALRVIHQALKLQGLGKVAFTTYQELSKRPEGVMTLLHDADALLLACCRAEKHRMAMMVVKQVQEAYFDAAARQETAGGGEGGGGGGGQASCNVPVTSPSSIPSSSPSLPPLPIVSRDAFLAVLRLLSERDRYKHHWRFAEDMVKDRRLPGVPVDVEVVAAAMVVSWKAQKWGSVQRLSAFLAGKGEVSGPVLLNAGQVWKEGREEEEEERGEVRRVVPVGLSAYALKDWKTMMTLRSMTEILRRMEGACVEKTVPEEKAAAAAAAAAAPAAAGPAPAPAPAPAGRGGGNTKVTRRRPAVVTTAHVNMLLYALLKVGQLDEAQALVVSMVK----QAKAPLSSSSSLPLPMPDALSLSMVMDAFGRKGNWQGALQLLNESNTLPTPPSPAAMRQLYKTAIAALGKDKLWEGALSLFYEMHERGVAADAQVYTTLLKALKEGGGWSRRLSF 578
A+LVR + RRRPLPFS A P P+ + +R LA IP R P PDAN+EGL RL H LA+++EA+DA + N A AL LR EG R + G AHR+ALLTLGHYG L P DALRV+HQAL ++GL K+AF T+ ELSKRPEG+ ++ D +ALLL+ CRAE+HRMA+M+V +Q+A+ PV + + SP+ PP+P +SR+A LA+LRLL ER R +H+W AEDMVKD+R+ G VDVEVVAAAMVV+W+A KW +VQRLSA++AGK V VLL +G+V KE +EEE RGE+RRV+ GLS YA K+WKT MTLRS+ ++L RM+ A E+ VP AA A + A GG + P V+ TAH+NM L ALL+V QLDEA A++ SM+ + P + P P PD LSL M+M+A GR+G+ L LLN + LP P+P+ R LYKTAIAA+GK WEGALSL+YEMHERGVAADAQV+T+LLKALK GG SF
Sbjct: 19 ASLVRSTVWRRRPLPFSFQVQA---PPPFPAQRLCAVRELATIPL------RWSKPNPDANIEGLQHRLDTHGLAQKEEASDARRVNAFAAALRILRREGSHRDT-GKEAHRRALLTLGHYGRELAPADALRVVHQALAMRGLQKLAFITFLELSKRPEGLAAIVQDVNALLLSSCRAEQHRMAIMLVSMLQQAH-------------------------TKPVPAAALEDGFSPTAPPVPTLSREASLALLRLLQERSRSQHYWHVAEDMVKDQRVMGASVDVEVVAAAMVVAWRAVKWAAVQRLSAYVAGKAGVPEVVLLTSGEVRKE-EGKEEESRGELRRVLSPGLSEYARKNWKTAMTLRSLVKVLGRMD-AKNEEDVPPPTAAETAGEGTGRRSGRDA----------GGQGHVPSAGAPHVLHTAHMNMYLKALLRVRQLDEAHAVLSSMLSPRSPPSACPFLPPALPPSPPPDVLSLCMLMEALGRQGDAPAVLTLLNRAQDLPWTPTPSDYRVLYKTAIAAVGKQGRWEGALSLYYEMHERGVAADAQVFTSLLKALKTGGKADSAFSF 549
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G04790.1 ID=NO05G04790.1|Name=NO05G04790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1754bp ACAGCCAAAGCATGTTGCTGGCCGCGACCCTGGTACGGCGGAGCAGCCGA CGACGACCCTTGCCCTTCTCCTCCACAGCAGCCGCACATCGTTCCCAAGC TCCTCTCCCATCAGCATCCATCACCATCCTCCGCGGCTTGGCCAACATCC CCTCCCACACCATGCCCCCACCGCGCACACCGCCACCCGTACCCGACGCC AATGTAGAGGGGCTGCATCAGCGGCTCTTAATGCACGAGCTGGCACGAGA AAAGGAGGCAGCGGACGCATGGAAGGCCAATGTAGTGGCAGAGGCTTTGG CGACCCTCCGGGGCGAGGGCGGGCCCCGCAAGAGCAAGGGAAGCATAGCC CATCGACAGGCCCTCTTGACGCTAGGACATTACGGGAGCTCACTCGAGCC TGAGGATGCTCTGCGTGTGATTCATCAGGCATTGAAACTGCAAGGGTTGG GCAAAGTGGCTTTCACGACGTACCAGGAGCTAAGCAAACGACCCGAAGGT GTCATGACACTTTTGCATGACGCAGACGCATTGCTCTTGGCGTGCTGCCG CGCAGAGAAACATCGCATGGCTATGATGGTGGTAAAGCAAGTCCAGGAGG CATATTTTGATGCTGCCGCACGACAGGAAACAGCAGGAGGAGGAGAAGGA GGAGGAGGAGGAGGGGGGCAAGCTTCCTGCAACGTACCCGTGACATCGCC CTCCTCCATCCCCTCCTCCTCACCATCGCTACCACCACTCCCAATTGTTT CCCGCGATGCTTTCTTGGCTGTCCTCCGCTTGTTGAGCGAACGTGATCGA TACAAGCACCATTGGCGGTTTGCGGAAGACATGGTGAAGGACAGGCGACT GCCAGGAGTACCTGTGGACGTGGAGGTGGTGGCAGCGGCGATGGTGGTCT CGTGGAAGGCTCAAAAATGGGGATCTGTTCAGAGATTATCTGCCTTTCTG GCAGGCAAGGGAGAGGTGTCAGGGCCGGTGTTGCTGAATGCGGGGCAGGT TTGGAAAGAGGGGAGGGAAGAGGAGGAGGAGGAGAGGGGGGAGGTCAGGA GGGTGGTGCCGGTGGGGTTGTCAGCTTATGCACTCAAGGATTGGAAGACG ATGATGACGTTGCGAAGCATGACAGAAATTTTAAGGCGAATGGAAGGCGC GTGTGTGGAAAAGACGGTGCCTGAAGAAAAAGCAGCAGCAGCAGCAGCAG CAGCAGCAGCACCAGCAGCAGCAGGACCAGCACCAGCACCAGCACCAGCA CCAGCAGGGCGGGGAGGGGGAAATACTAAAGTGACACGTCGTCGGCCAGC GGTCGTGACCACCGCTCATGTGAACATGCTCCTATACGCCTTGCTCAAAG TAGGACAACTTGATGAAGCCCAAGCGCTCGTCGTATCCATGGTTAAGCAA GCAAAGGCACCCCTGTCCTCCTCGTCCTCCCTCCCTCTCCCCATGCCCGA CGCCCTCTCCCTCTCTATGGTAATGGACGCGTTCGGTCGCAAAGGCAACT GGCAAGGAGCTCTGCAACTACTCAACGAATCCAACACCCTGCCGACCCCT CCCTCTCCCGCCGCCATGCGCCAGCTCTACAAAACGGCCATAGCAGCCTT GGGGAAAGATAAGCTGTGGGAGGGGGCCCTGTCCTTGTTTTACGAGATGC ACGAGAGAGGCGTGGCGGCCGACGCCCAGGTGTACACGACATTATTGAAG GCTTTGAAGGAGGGGGGAGGGTGGAGTCGGCGTTTGAGTTTTGGAGGATC ATGA back to topprotein sequence of NO05G04790.1 >NO05G04790.1-protein ID=NO05G04790.1-protein|Name=NO05G04790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=581bp MLLAATLVRRSSRRRPLPFSSTAAAHRSQAPLPSASITILRGLANIPSHT MPPPRTPPPVPDANVEGLHQRLLMHELAREKEAADAWKANVVAEALATLR GEGGPRKSKGSIAHRQALLTLGHYGSSLEPEDALRVIHQALKLQGLGKVA FTTYQELSKRPEGVMTLLHDADALLLACCRAEKHRMAMMVVKQVQEAYFD AAARQETAGGGEGGGGGGGQASCNVPVTSPSSIPSSSPSLPPLPIVSRDA FLAVLRLLSERDRYKHHWRFAEDMVKDRRLPGVPVDVEVVAAAMVVSWKA QKWGSVQRLSAFLAGKGEVSGPVLLNAGQVWKEGREEEEEERGEVRRVVP VGLSAYALKDWKTMMTLRSMTEILRRMEGACVEKTVPEEKAAAAAAAAAA PAAAGPAPAPAPAPAGRGGGNTKVTRRRPAVVTTAHVNMLLYALLKVGQL DEAQALVVSMVKQAKAPLSSSSSLPLPMPDALSLSMVMDAFGRKGNWQGA LQLLNESNTLPTPPSPAAMRQLYKTAIAALGKDKLWEGALSLFYEMHERG VAADAQVYTTLLKALKEGGGWSRRLSFGGS* back to topmRNA from alignment at chr5:1244373..1246126- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G04790.1 ID=NO05G04790.1|Name=NO05G04790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1754bp|location=Sequence derived from alignment at chr5:1244373..1246126- (Nannochloropsis oceanica) ACAGCCAAAGCATGTTGCTGGCCGCGACCCTGGTACGGCGGAGCAGCCGA
CGACGACCCTTGCCCTTCTCCTCCACAGCAGCCGCACATCGTTCCCAAGC
TCCTCTCCCATCAGCATCCATCACCATCCTCCGCGGCTTGGCCAACATCC
CCTCCCACACCATGCCCCCACCGCGCACACCGCCACCCGTACCCGACGCC
AATGTAGAGGGGCTGCATCAGCGGCTCTTAATGCACGAGCTGGCACGAGA
AAAGGAGGCAGCGGACGCATGGAAGGCCAATGTAGTGGCAGAGGCTTTGG
CGACCCTCCGGGGCGAGGGCGGGCCCCGCAAGAGCAAGGGAAGCATAGCC
CATCGACAGGCCCTCTTGACGCTAGGACATTACGGGAGCTCACTCGAGCC
TGAGGATGCTCTGCGTGTGATTCATCAGGCATTGAAACTGCAAGGGTTGG
GCAAAGTGGCTTTCACGACGTACCAGGAGCTAAGCAAACGACCCGAAGGT
GTCATGACACTTTTGCATGACGCAGACGCATTGCTCTTGGCGTGCTGCCG
CGCAGAGAAACATCGCATGGCTATGATGGTGGTAAAGCAAGTCCAGGAGG
CATATTTTGATGCTGCCGCACGACAGGAAACAGCAGGAGGAGGAGAAGGA
GGAGGAGGAGGAGGGGGGCAAGCTTCCTGCAACGTACCCGTGACATCGCC
CTCCTCCATCCCCTCCTCCTCACCATCGCTACCACCACTCCCAATTGTTT
CCCGCGATGCTTTCTTGGCTGTCCTCCGCTTGTTGAGCGAACGTGATCGA
TACAAGCACCATTGGCGGTTTGCGGAAGACATGGTGAAGGACAGGCGACT
GCCAGGAGTACCTGTGGACGTGGAGGTGGTGGCAGCGGCGATGGTGGTCT
CGTGGAAGGCTCAAAAATGGGGATCTGTTCAGAGATTATCTGCCTTTCTG
GCAGGCAAGGGAGAGGTGTCAGGGCCGGTGTTGCTGAATGCGGGGCAGGT
TTGGAAAGAGGGGAGGGAAGAGGAGGAGGAGGAGAGGGGGGAGGTCAGGA
GGGTGGTGCCGGTGGGGTTGTCAGCTTATGCACTCAAGGATTGGAAGACG
ATGATGACGTTGCGAAGCATGACAGAAATTTTAAGGCGAATGGAAGGCGC
GTGTGTGGAAAAGACGGTGCCTGAAGAAAAAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCACCAGCAGCAGCAGGACCAGCACCAGCACCAGCACCAGCA
CCAGCAGGGCGGGGAGGGGGAAATACTAAAGTGACACGTCGTCGGCCAGC
GGTCGTGACCACCGCTCATGTGAACATGCTCCTATACGCCTTGCTCAAAG
TAGGACAACTTGATGAAGCCCAAGCGCTCGTCGTATCCATGGTTAAGCAA
GCAAAGGCACCCCTGTCCTCCTCGTCCTCCCTCCCTCTCCCCATGCCCGA
CGCCCTCTCCCTCTCTATGGTAATGGACGCGTTCGGTCGCAAAGGCAACT
GGCAAGGAGCTCTGCAACTACTCAACGAATCCAACACCCTGCCGACCCCT
CCCTCTCCCGCCGCCATGCGCCAGCTCTACAAAACGGCCATAGCAGCCTT
GGGGAAAGATAAGCTGTGGGAGGGGGCCCTGTCCTTGTTTTACGAGATGC
ACGAGAGAGGCGTGGCGGCCGACGCCCAGGTGTACACGACATTATTGAAG
GCTTTGAAGGAGGGGGGAGGGTGGAGTCGGCGTTTGAGTTTTGGAGGATC
ATGA back to topCoding sequence (CDS) from alignment at chr5:1244373..1246126- >NO05G04790.1 ID=NO05G04790.1|Name=NO05G04790.1|organism=Nannochloropsis oceanica|type=CDS|length=1743bp|location=Sequence derived from alignment at chr5:1244373..1246126- (Nannochloropsis oceanica) ATGTTGCTGGCCGCGACCCTGGTACGGCGGAGCAGCCGACGACGACCCTT GCCCTTCTCCTCCACAGCAGCCGCACATCGTTCCCAAGCTCCTCTCCCAT CAGCATCCATCACCATCCTCCGCGGCTTGGCCAACATCCCCTCCCACACC ATGCCCCCACCGCGCACACCGCCACCCGTACCCGACGCCAATGTAGAGGG GCTGCATCAGCGGCTCTTAATGCACGAGCTGGCACGAGAAAAGGAGGCAG CGGACGCATGGAAGGCCAATGTAGTGGCAGAGGCTTTGGCGACCCTCCGG GGCGAGGGCGGGCCCCGCAAGAGCAAGGGAAGCATAGCCCATCGACAGGC CCTCTTGACGCTAGGACATTACGGGAGCTCACTCGAGCCTGAGGATGCTC TGCGTGTGATTCATCAGGCATTGAAACTGCAAGGGTTGGGCAAAGTGGCT TTCACGACGTACCAGGAGCTAAGCAAACGACCCGAAGGTGTCATGACACT TTTGCATGACGCAGACGCATTGCTCTTGGCGTGCTGCCGCGCAGAGAAAC ATCGCATGGCTATGATGGTGGTAAAGCAAGTCCAGGAGGCATATTTTGAT GCTGCCGCACGACAGGAAACAGCAGGAGGAGGAGAAGGAGGAGGAGGAGG AGGGGGGCAAGCTTCCTGCAACGTACCCGTGACATCGCCCTCCTCCATCC CCTCCTCCTCACCATCGCTACCACCACTCCCAATTGTTTCCCGCGATGCT TTCTTGGCTGTCCTCCGCTTGTTGAGCGAACGTGATCGATACAAGCACCA TTGGCGGTTTGCGGAAGACATGGTGAAGGACAGGCGACTGCCAGGAGTAC CTGTGGACGTGGAGGTGGTGGCAGCGGCGATGGTGGTCTCGTGGAAGGCT CAAAAATGGGGATCTGTTCAGAGATTATCTGCCTTTCTGGCAGGCAAGGG AGAGGTGTCAGGGCCGGTGTTGCTGAATGCGGGGCAGGTTTGGAAAGAGG GGAGGGAAGAGGAGGAGGAGGAGAGGGGGGAGGTCAGGAGGGTGGTGCCG GTGGGGTTGTCAGCTTATGCACTCAAGGATTGGAAGACGATGATGACGTT GCGAAGCATGACAGAAATTTTAAGGCGAATGGAAGGCGCGTGTGTGGAAA AGACGGTGCCTGAAGAAAAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA CCAGCAGCAGCAGGACCAGCACCAGCACCAGCACCAGCACCAGCAGGGCG GGGAGGGGGAAATACTAAAGTGACACGTCGTCGGCCAGCGGTCGTGACCA CCGCTCATGTGAACATGCTCCTATACGCCTTGCTCAAAGTAGGACAACTT GATGAAGCCCAAGCGCTCGTCGTATCCATGGTTAAGCAAGCAAAGGCACC CCTGTCCTCCTCGTCCTCCCTCCCTCTCCCCATGCCCGACGCCCTCTCCC TCTCTATGGTAATGGACGCGTTCGGTCGCAAAGGCAACTGGCAAGGAGCT CTGCAACTACTCAACGAATCCAACACCCTGCCGACCCCTCCCTCTCCCGC CGCCATGCGCCAGCTCTACAAAACGGCCATAGCAGCCTTGGGGAAAGATA AGCTGTGGGAGGGGGCCCTGTCCTTGTTTTACGAGATGCACGAGAGAGGC GTGGCGGCCGACGCCCAGGTGTACACGACATTATTGAAGGCTTTGAAGGA GGGGGGAGGGTGGAGTCGGCGTTTGAGTTTTGGAGGATCATGA back to top
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