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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:1084101..1086155 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G04200.1 vs.
Match: EWM27950.1 (Ribonuclease Zc3h12a-like protein [Nannochloropsis gaditana]) HSP 1 Score: 674.1 bits (1738), Expect = 3.700e-190 Identity = 355/578 (61.42%), Postives = 421/578 (72.84%), Query Frame = 0
Query: 1 MSVKRDVAAAALDMEGDSKRRNGSTQQSTSEILPQKE----PTEEQKNRMLKQSKRMKKLLASDPAAAEKMDYRRRVGMARRDDDVPTALQLFTDIQARNIDVGHEGFNALIALLTTFERQAEAEAVLTYMREKHVPLTEATYVSMMRALALGSKLQKPEAAEALLDEMLSTGQRPRLRSYSPIVVGYAQQGKINAAFQLYDKMLTHKIEPTEVELVALLKVCGEARREGGKEGGGKKVEERFYRVMREMQELVLEPGEGAWEAMKEWFAT-------------------------AATPA--AEEVKVTSGVVIDNKGVCGECGQVLDSIDLTSQASGELLTMVEELVLAEPARAGDWEMFKSWLEGGRESARTGWPEFDVVVDGANVGYFQMNYAQAPSHVNYEQISWVVEHFERRGKRPLLVLHARHVDDRKIPPEYVGLVRGWRERGLLLVVPYRNNDDWFWLFTTVFKGGRTLLVTNDEMRDHHFQMLSQRTFLRWKERHQAYFSFGGHERGGGRSVKIEAPAVYSRCIQGPRSMKEGSGKEGGESWHLPKAGSEEWMCVQVRRKDGEEGVNE 548
M++KR AA L+ + SK + S S S + P ++ + L+Q+KRMK+LLASDPAAAE+MDYRRR+G+ARRDDD+PTALQLF D+QAR+ID+G EGFNALIALLTTFER +A+ VLT+MR KH LTEATYV +MRALALG + +PEAAE LL EML+ G RPRLRSYSPI+VGYA+QGK+ AF LYDKML IEPTE ELVALL+ C EGGG + FYR + ++Q+LVLEPGEGAWEA+ WF AA P + E+ V GVV+D GVC CG VL+SI L+S+A+ EL+T VEELVLA+ AR +W FK+WL G R PEFD V+DGANVGYFQMNYAQAP HVNYEQISWVVEHF GK+PLLVLHARHVD R++PP Y LV+ WRER LLLVVPYRNNDDWFWLF TVFKGGRTLLVTNDEMRDHHFQMLSQRTFLRWKERHQ +FSFGG+E+GGGRSV+I+ PAVYS+CIQGP + K G+E E+WHLP+AG ++W+CVQVRR N+
Sbjct: 1 MALKRVYEAAPLNEDVGSKP-SASVPPSQSILSESSSSPNAPPQDHNDGSLRQTKRMKRLLASDPAAAERMDYRRRLGLARRDDDIPTALQLFADVQARDIDIGSEGFNALIALLTTFERLEDADQVLTHMRRKHFSLTEATYVCIMRALALGGR--QPEAAEDLLREMLAGGLRPRLRSYSPIIVGYAEQGKLENAFALYDKMLAQDIEPTETELVALLRGCSG-------EGGGNVEVDNFYRTLADLQDLVLEPGEGAWEAVAGWFEKRRERGDWAVGHDQAAKSGGRGKDRKAALPQTPSPEMSVRRGVVVDEAGVCSGCGTVLESIQLSSEAADELMTKVEELVLADRAREAEWARFKAWLRGPGGGGRA--PEFDTVIDGANVGYFQMNYAQAPPHVNYEQISWVVEHFVGMGKKPLLVLHARHVDSRRVPPGYAALVQKWRERQLLLVVPYRNNDDWFWLFATVFKGGRTLLVTNDEMRDHHFQMLSQRTFLRWKERHQVHFSFGGYEKGGGRSVQIQVPAVYSKCIQGPGNGKAAGGRE-DENWHLPRAGDDKWLCVQVRRGGATHAQND 565
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G04200.1 ID=NO05G04200.1|Name=NO05G04200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2055bp
AGATATCTCCATACATCTGCCTCCGTCCTCCATCAACCATTCAGCGCTTG
CTCAGGCCCCACCTGCTCCGGAGGGCAGTGGTCGTCGTCGTCGCCTCCCC
ATCATCACCCCTCATTCGCAGCCTCCCCACTTGCGTCTCAGTTCACACCA
AGCCACCGCGTCCTCGGCAGCCCGTGGACCCTGAAGACAACAATATATCG
CTTCATCGCAGGCATTCCAAGAAGCACTCTTCTCCTCTTTCCAAAAGCAA
TACAACCACCACAACCAGGAAGCCTCCCAAGCACACTCCTGCTTCTCCTC
ATAGCATGTCCGTAAAACGGGACGTTGCCGCCGCAGCCCTTGACATGGAG
GGAGATAGCAAAAGAAGGAATGGTAGCACTCAGCAATCAACTTCTGAAAT
CCTCCCCCAAAAGGAGCCTACCGAGGAACAAAAGAACCGCATGCTTAAAC
AAAGCAAGCGGATGAAAAAACTCCTTGCGTCCGACCCGGCTGCGGCTGAA
AAAATGGACTACAGGCGGCGTGTTGGCATGGCACGGCGCGATGATGATGT
GCCGACGGCGTTGCAGCTTTTTACGGACATCCAAGCGCGGAACATTGACG
TAGGACATGAGGGATTTAACGCCCTGATTGCTTTGCTCACCACCTTTGAG
CGGCAAGCGGAAGCAGAAGCTGTGCTCACATACATGCGGGAGAAACACGT
CCCGTTGACAGAAGCGACTTATGTGTCAATGATGCGTGCCTTGGCTTTAG
GGTCAAAACTCCAAAAACCGGAGGCAGCCGAAGCATTGTTGGATGAAATG
TTATCGACCGGGCAAAGACCACGATTAAGGTCGTACAGCCCTATTGTGGT
GGGGTATGCGCAGCAAGGAAAGATCAATGCAGCGTTTCAATTGTATGATA
AGATGTTGACACACAAGATTGAACCGACCGAAGTGGAGCTGGTGGCGTTG
TTGAAGGTTTGTGGGGAGGCAAGGAGGGAGGGTGGGAAGGAGGGAGGAGG
GAAGAAGGTGGAGGAGAGGTTTTATCGGGTGATGCGCGAGATGCAGGAGT
TGGTCCTGGAGCCGGGAGAAGGAGCGTGGGAGGCCATGAAAGAATGGTTT
GCAACCGCAGCGACACCAGCAGCAGAAGAAGTGAAAGTAACGAGTGGCGT
AGTCATAGACAACAAGGGGGTGTGTGGTGAGTGCGGCCAGGTCCTGGATT
CCATCGATCTCACCTCCCAAGCATCTGGAGAGTTGTTGACGATGGTAGAA
GAGCTGGTCCTCGCCGAACCCGCCCGTGCGGGGGACTGGGAGATGTTTAA
GTCCTGGTTGGAGGGAGGGAGGGAGAGCGCAAGGACGGGATGGCCCGAGT
TTGATGTGGTGGTGGATGGAGCGAACGTGGGGTATTTTCAGATGAATTAC
GCCCAGGCGCCTTCACATGTAAATTACGAGCAGATCTCTTGGGTGGTGGA
GCATTTTGAAAGGCGAGGTAAAAGGCCCTTGTTGGTATTGCATGCGCGGC
ACGTGGACGACCGAAAGATCCCGCCTGAGTACGTGGGGCTGGTCCGGGGG
TGGAGGGAGAGGGGGTTGTTGCTGGTAGTGCCTTACCGGAATAATGACGA
CTGGTTTTGGTTGTTTACGACCGTGTTTAAGGGGGGGAGGACGCTGCTGG
TCACCAACGACGAGATGCGTGACCATCACTTTCAGATGTTGTCCCAGCGG
ACGTTTTTGCGGTGGAAGGAGCGGCACCAAGCGTATTTCTCGTTTGGAGG
CCACGAGAGGGGGGGAGGGAGAAGTGTGAAGATCGAGGCGCCAGCTGTGT
ATTCGAGATGTATTCAGGGACCGAGATCGATGAAGGAGGGGAGTGGGAAG
GAGGGAGGGGAGTCTTGGCATTTGCCGAAGGCAGGGAGTGAGGAGTGGAT
GTGTGTGCAGGTACGGAGGAAGGATGGGGAGGAAGGGGTGAATGAAGAGA
AGTAAGGCGAAGGCGTAACGGCACCAACATTGCCCAGAAAAAGTACAGTG
TGAAAACATCATCCCAACAGAAGCGTAAGGGGAAGAATAAGACAACTAGC
CCGGA back to topprotein sequence of NO05G04200.1 >NO05G04200.1-protein ID=NO05G04200.1-protein|Name=NO05G04200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=550bp
MSVKRDVAAAALDMEGDSKRRNGSTQQSTSEILPQKEPTEEQKNRMLKQS
KRMKKLLASDPAAAEKMDYRRRVGMARRDDDVPTALQLFTDIQARNIDVG
HEGFNALIALLTTFERQAEAEAVLTYMREKHVPLTEATYVSMMRALALGS
KLQKPEAAEALLDEMLSTGQRPRLRSYSPIVVGYAQQGKINAAFQLYDKM
LTHKIEPTEVELVALLKVCGEARREGGKEGGGKKVEERFYRVMREMQELV
LEPGEGAWEAMKEWFATAATPAAEEVKVTSGVVIDNKGVCGECGQVLDSI
DLTSQASGELLTMVEELVLAEPARAGDWEMFKSWLEGGRESARTGWPEFD
VVVDGANVGYFQMNYAQAPSHVNYEQISWVVEHFERRGKRPLLVLHARHV
DDRKIPPEYVGLVRGWRERGLLLVVPYRNNDDWFWLFTTVFKGGRTLLVT
NDEMRDHHFQMLSQRTFLRWKERHQAYFSFGGHERGGGRSVKIEAPAVYS
RCIQGPRSMKEGSGKEGGESWHLPKAGSEEWMCVQVRRKDGEEGVNEEK* back to topmRNA from alignment at chr5:1084101..1086155- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G04200.1 ID=NO05G04200.1|Name=NO05G04200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2055bp|location=Sequence derived from alignment at chr5:1084101..1086155- (Nannochloropsis oceanica)
AGATATCTCCATACATCTGCCTCCGTCCTCCATCAACCATTCAGCGCTTG
CTCAGGCCCCACCTGCTCCGGAGGGCAGTGGTCGTCGTCGTCGCCTCCCC
ATCATCACCCCTCATTCGCAGCCTCCCCACTTGCGTCTCAGTTCACACCA
AGCCACCGCGTCCTCGGCAGCCCGTGGACCCTGAAGACAACAATATATCG
CTTCATCGCAGGCATTCCAAGAAGCACTCTTCTCCTCTTTCCAAAAGCAA
TACAACCACCACAACCAGGAAGCCTCCCAAGCACACTCCTGCTTCTCCTC
ATAGCATGTCCGTAAAACGGGACGTTGCCGCCGCAGCCCTTGACATGGAG
GGAGATAGCAAAAGAAGGAATGGTAGCACTCAGCAATCAACTTCTGAAAT
CCTCCCCCAAAAGGAGCCTACCGAGGAACAAAAGAACCGCATGCTTAAAC
AAAGCAAGCGGATGAAAAAACTCCTTGCGTCCGACCCGGCTGCGGCTGAA
AAAATGGACTACAGGCGGCGTGTTGGCATGGCACGGCGCGATGATGATGT
GCCGACGGCGTTGCAGCTTTTTACGGACATCCAAGCGCGGAACATTGACG
TAGGACATGAGGGATTTAACGCCCTGATTGCTTTGCTCACCACCTTTGAG
CGGCAAGCGGAAGCAGAAGCTGTGCTCACATACATGCGGGAGAAACACGT
CCCGTTGACAGAAGCGACTTATGTGTCAATGATGCGTGCCTTGGCTTTAG
GGTCAAAACTCCAAAAACCGGAGGCAGCCGAAGCATTGTTGGATGAAATG
TTATCGACCGGGCAAAGACCACGATTAAGGTCGTACAGCCCTATTGTGGT
GGGGTATGCGCAGCAAGGAAAGATCAATGCAGCGTTTCAATTGTATGATA
AGATGTTGACACACAAGATTGAACCGACCGAAGTGGAGCTGGTGGCGTTG
TTGAAGGTTTGTGGGGAGGCAAGGAGGGAGGGTGGGAAGGAGGGAGGAGG
GAAGAAGGTGGAGGAGAGGTTTTATCGGGTGATGCGCGAGATGCAGGAGT
TGGTCCTGGAGCCGGGAGAAGGAGCGTGGGAGGCCATGAAAGAATGGTTT
GCAACCGCAGCGACACCAGCAGCAGAAGAAGTGAAAGTAACGAGTGGCGT
AGTCATAGACAACAAGGGGGTGTGTGGTGAGTGCGGCCAGGTCCTGGATT
CCATCGATCTCACCTCCCAAGCATCTGGAGAGTTGTTGACGATGGTAGAA
GAGCTGGTCCTCGCCGAACCCGCCCGTGCGGGGGACTGGGAGATGTTTAA
GTCCTGGTTGGAGGGAGGGAGGGAGAGCGCAAGGACGGGATGGCCCGAGT
TTGATGTGGTGGTGGATGGAGCGAACGTGGGGTATTTTCAGATGAATTAC
GCCCAGGCGCCTTCACATGTAAATTACGAGCAGATCTCTTGGGTGGTGGA
GCATTTTGAAAGGCGAGGTAAAAGGCCCTTGTTGGTATTGCATGCGCGGC
ACGTGGACGACCGAAAGATCCCGCCTGAGTACGTGGGGCTGGTCCGGGGG
TGGAGGGAGAGGGGGTTGTTGCTGGTAGTGCCTTACCGGAATAATGACGA
CTGGTTTTGGTTGTTTACGACCGTGTTTAAGGGGGGGAGGACGCTGCTGG
TCACCAACGACGAGATGCGTGACCATCACTTTCAGATGTTGTCCCAGCGG
ACGTTTTTGCGGTGGAAGGAGCGGCACCAAGCGTATTTCTCGTTTGGAGG
CCACGAGAGGGGGGGAGGGAGAAGTGTGAAGATCGAGGCGCCAGCTGTGT
ATTCGAGATGTATTCAGGGACCGAGATCGATGAAGGAGGGGAGTGGGAAG
GAGGGAGGGGAGTCTTGGCATTTGCCGAAGGCAGGGAGTGAGGAGTGGAT
GTGTGTGCAGGTACGGAGGAAGGATGGGGAGGAAGGGGTGAATGAAGAGA
AGTAAGGCGAAGGCGTAACGGCACCAACATTGCCCAGAAAAAGTACAGTG
TGAAAACATCATCCCAACAGAAGCGTAAGGGGAAGAATAAGACAACTAGC
CCGGA back to topCoding sequence (CDS) from alignment at chr5:1084101..1086155- >NO05G04200.1 ID=NO05G04200.1|Name=NO05G04200.1|organism=Nannochloropsis oceanica|type=CDS|length=1650bp|location=Sequence derived from alignment at chr5:1084101..1086155- (Nannochloropsis oceanica)
ATGTCCGTAAAACGGGACGTTGCCGCCGCAGCCCTTGACATGGAGGGAGA
TAGCAAAAGAAGGAATGGTAGCACTCAGCAATCAACTTCTGAAATCCTCC
CCCAAAAGGAGCCTACCGAGGAACAAAAGAACCGCATGCTTAAACAAAGC
AAGCGGATGAAAAAACTCCTTGCGTCCGACCCGGCTGCGGCTGAAAAAAT
GGACTACAGGCGGCGTGTTGGCATGGCACGGCGCGATGATGATGTGCCGA
CGGCGTTGCAGCTTTTTACGGACATCCAAGCGCGGAACATTGACGTAGGA
CATGAGGGATTTAACGCCCTGATTGCTTTGCTCACCACCTTTGAGCGGCA
AGCGGAAGCAGAAGCTGTGCTCACATACATGCGGGAGAAACACGTCCCGT
TGACAGAAGCGACTTATGTGTCAATGATGCGTGCCTTGGCTTTAGGGTCA
AAACTCCAAAAACCGGAGGCAGCCGAAGCATTGTTGGATGAAATGTTATC
GACCGGGCAAAGACCACGATTAAGGTCGTACAGCCCTATTGTGGTGGGGT
ATGCGCAGCAAGGAAAGATCAATGCAGCGTTTCAATTGTATGATAAGATG
TTGACACACAAGATTGAACCGACCGAAGTGGAGCTGGTGGCGTTGTTGAA
GGTTTGTGGGGAGGCAAGGAGGGAGGGTGGGAAGGAGGGAGGAGGGAAGA
AGGTGGAGGAGAGGTTTTATCGGGTGATGCGCGAGATGCAGGAGTTGGTC
CTGGAGCCGGGAGAAGGAGCGTGGGAGGCCATGAAAGAATGGTTTGCAAC
CGCAGCGACACCAGCAGCAGAAGAAGTGAAAGTAACGAGTGGCGTAGTCA
TAGACAACAAGGGGGTGTGTGGTGAGTGCGGCCAGGTCCTGGATTCCATC
GATCTCACCTCCCAAGCATCTGGAGAGTTGTTGACGATGGTAGAAGAGCT
GGTCCTCGCCGAACCCGCCCGTGCGGGGGACTGGGAGATGTTTAAGTCCT
GGTTGGAGGGAGGGAGGGAGAGCGCAAGGACGGGATGGCCCGAGTTTGAT
GTGGTGGTGGATGGAGCGAACGTGGGGTATTTTCAGATGAATTACGCCCA
GGCGCCTTCACATGTAAATTACGAGCAGATCTCTTGGGTGGTGGAGCATT
TTGAAAGGCGAGGTAAAAGGCCCTTGTTGGTATTGCATGCGCGGCACGTG
GACGACCGAAAGATCCCGCCTGAGTACGTGGGGCTGGTCCGGGGGTGGAG
GGAGAGGGGGTTGTTGCTGGTAGTGCCTTACCGGAATAATGACGACTGGT
TTTGGTTGTTTACGACCGTGTTTAAGGGGGGGAGGACGCTGCTGGTCACC
AACGACGAGATGCGTGACCATCACTTTCAGATGTTGTCCCAGCGGACGTT
TTTGCGGTGGAAGGAGCGGCACCAAGCGTATTTCTCGTTTGGAGGCCACG
AGAGGGGGGGAGGGAGAAGTGTGAAGATCGAGGCGCCAGCTGTGTATTCG
AGATGTATTCAGGGACCGAGATCGATGAAGGAGGGGAGTGGGAAGGAGGG
AGGGGAGTCTTGGCATTTGCCGAAGGCAGGGAGTGAGGAGTGGATGTGTG
TGCAGGTACGGAGGAAGGATGGGGAGGAAGGGGTGAATGAAGAGAAGTAA back to top
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