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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:1080846..1083385 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G04190.1 vs.
Match: EWM27974.1 (ppgpp synthetase [Nannochloropsis gaditana]) HSP 1 Score: 865.5 bits (2235), Expect = 1.200e-247 Identity = 490/752 (65.16%), Postives = 560/752 (74.47%), Query Frame = 0
Query: 13 MTSITTRIKI--PRAAGREVGIRRLLLLF----HASFLCLFLSLSTVGAFAPLGLCSHRRRIAVTVGSSPSSTTPEAAAPDSVVQPTISWDMRVPRRAGLAPPTHSSSRDTRLV-KGPRRVPQPTNYGLWDLLIGPVAADFKLVGMPSELGPLANDVHRATEHLTRPERLAVLQALVRSYHAYRLRAPSPFVSQEATAAHSPT---EKAKAKSLTVGAYMEQNVAVIRLLGDSEVDGDTMVAALLCQAPLSVEAVEADFGAPVAGILKGWKAMLAVESQLEIKSLIHEYAHFLWGGQGDNLRNLLLVVGKDWRAVALRVAWKKVEMETRVFGTKKDEIDACWACLNVYASLAEAAGMSIIKNALEDRAFQFLMPQEHRRVVSELEARRGHYQKVLGQARREVLQALMEDPIFMSNVERVEVRGRIKSPYSTWKKMKRKGQ--REGASAGEGGRAVGFEGLYDMVALRVVCTPLYNEEKKDVYSHPSSSSSPSSSSPPTPLMLEARASKDRATCEYILHEVVHKLRPHYKSRVKDYIGEGKRKANGYQSLHTTLAYRIRGETTPVEVQIRTSEMHSVAEHGLAAHCLYKGDKNLADVIERGQQQMDAEMGEQGKEEQQPPRGFAGPGEFLTWCQRMLDKSHVIVFSPDGRLLKLDRGATLLDFLKASYVQRKVGRGMVTRSSSISSSVEHGVRNGEEKHHHHKLQPQ-RFREEQMEEAAEERRRKKAYVQLKKTKRSTQGMLLLNGRTAPALD 752
MTS TTRIK+ R +G R L LL + + LCL L S+V AFAP GL S R R AV VGS S A++ + + D PR P H+ +RL K RR PT YGLWDL++GPVAADFKLVGMPSEL LA +VH+AT+HLTRP RLAVLQALVRSYHAYR P E S T ++A AK+LTVGAYMEQNVAV RLLG SEVDGDTMVAALLC +PL++EAVE +FG V IL GWKAML VE QLEIKSLIHEYAHFLWGGQGDNLRNLLLVV KDWRAVALRVAWKKVEMET VFG KK+EIDACWACLNVYASLAEAAGMS IKNALE+RAF+FLMPQEHR+V++ LEA+R YQKVLGQAR+EVLQAL+EDP+FMSNVERVEVRGRIKSPYS WKKMKRKG EG GEG +G EG+YDMVALRVVCTPLY +++ S+SS+ SPPTP L+ARA D+ C+Y+L EVVHKLRPHYK RVKDY+GE RKANGYQSLHTTLAYR+RGETTPVE+QIRTSEMHSVAEHGLAAHCLYKGD+ LA+VIERGQQQ + +M E+ ++ P RGFAGPGEFLTWCQ+MLDKSHVIVFSPDG+LLKL+RGATLLDF+KAS +Q K G R + + VE G G +L PQ +R++ E E + V +K+KRSTQGMLLLNG++APALD
Sbjct: 1 MTSSTTRIKVLRRRPSGGGSMCRALPLLRAVVGYVTLLCLLLEPSSVAAFAPRGLSSQRCRTAVPVGSGTSQDMVIASSVATTASSSTGADP--PRGMKARLPEHTLPPSSRLAAKKSRRPKLPTMYGLWDLVVGPVAADFKLVGMPSELTALAIEVHKATDHLTRPARLAVLQALVRSYHAYRFHKPCQITLDETGRRPSTTTAPQRAVAKALTVGAYMEQNVAVARLLGASEVDGDTMVAALLCHSPLTLEAVENEFGKAVGTILAGWKAMLGVEGQLEIKSLIHEYAHFLWGGQGDNLRNLLLVVAKDWRAVALRVAWKKVEMETTVFGAKKEEIDACWACLNVYASLAEAAGMSQIKNALEERAFKFLMPQEHRKVMTALEAKRDRYQKVLGQARKEVLQALLEDPVFMSNVERVEVRGRIKSPYSVWKKMKRKGMLVEEGEGGGEGS-GMGLEGVYDMVALRVVCTPLYADKEAS-----SASSATLPVSPPTPATLQARADLDKQMCDYVLREVVHKLRPHYKGRVKDYVGEENRKANGYQSLHTTLAYRLRGETTPVEIQIRTSEMHSVAEHGLAAHCLYKGDRTLAEVIERGQQQAEQQMQEE-EDAIGPQRGFAGPGEFLTWCQKMLDKSHVIVFSPDGKLLKLNRGATLLDFVKASCLQPKAGTAQGKRGTR-NKRVEEGRGCG-------RLHPQGLWRDDSAHE--EHGGYQTVPVSRRKSKRSTQGMLLLNGQSAPALD 733
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G04190.1 ID=NO05G04190.1|Name=NO05G04190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2292bp ATGCAGCGAGCGAGCTGCAACGAACCCGTGCATATAATGACGTCGATCAC AACGAGGATAAAAATTCCGCGGGCAGCGGGAAGAGAAGTGGGCATCAGGA GGCTGCTCCTTCTTTTCCATGCCAGCTTTCTCTGCCTATTCCTGAGCCTA AGCACCGTGGGAGCATTTGCCCCCTTGGGGCTTTGTTCGCATCGACGCCG CATTGCCGTAACAGTGGGCTCTAGCCCTAGCAGCACCACCCCAGAGGCCG CTGCACCTGATAGCGTCGTCCAGCCGACAATCTCTTGGGACATGAGGGTT CCGCGTCGCGCGGGCCTCGCCCCTCCTACTCATTCTTCTTCCCGTGACAC CAGATTAGTCAAAGGACCACGTCGCGTGCCGCAACCCACAAATTACGGTT TGTGGGACCTATTGATCGGACCAGTGGCTGCTGACTTTAAGCTTGTAGGG ATGCCTTCAGAGCTCGGGCCTTTGGCAAACGACGTGCATCGTGCCACAGA GCATCTGACCCGCCCAGAACGCCTGGCAGTACTTCAGGCATTGGTGCGTT CCTACCACGCGTACCGTCTCCGAGCGCCCTCTCCTTTTGTGTCCCAAGAG GCCACAGCAGCCCACTCGCCCACCGAGAAAGCCAAAGCCAAGTCATTGAC TGTAGGGGCATACATGGAGCAAAACGTTGCGGTGATCCGTTTGTTGGGTG ATTCGGAAGTGGATGGAGATACTATGGTTGCTGCTCTTTTGTGCCAGGCT CCTCTGTCAGTAGAGGCCGTTGAGGCTGATTTTGGAGCGCCGGTGGCCGG GATCTTAAAAGGGTGGAAGGCCATGTTGGCGGTGGAGAGTCAGTTGGAAA TTAAGAGTTTGATTCATGAGTATGCGCACTTTTTGTGGGGGGGTCAGGGG GATAATCTGCGTAATTTGCTGTTGGTGGTGGGTAAGGATTGGAGGGCAGT TGCCTTGAGGGTTGCATGGAAGAAAGTAGAGATGGAGACGAGGGTATTTG GGACGAAGAAGGATGAAATTGACGCCTGTTGGGCTTGTTTGAATGTATAC GCCTCTTTGGCAGAAGCGGCGGGGATGAGCATCATTAAGAATGCGTTAGA GGATCGGGCGTTTCAGTTCTTGATGCCCCAGGAACACAGGCGGGTGGTGT CAGAGCTTGAGGCGAGACGAGGACACTACCAGAAGGTTTTGGGGCAGGCG AGGAGGGAGGTGCTCCAAGCACTGATGGAGGATCCGATCTTTATGAGTAA TGTGGAGAGGGTGGAGGTGAGGGGGAGGATCAAGAGCCCCTATAGCACTT GGAAGAAGATGAAGAGGAAGGGACAGAGGGAGGGGGCGAGCGCTGGGGAG GGAGGTCGGGCGGTCGGATTCGAGGGATTGTATGACATGGTGGCTTTGCG CGTGGTGTGCACGCCGCTGTACAACGAAGAGAAAAAGGACGTGTATTCTC ATCCTTCTTCCTCCTCCTCGCCGTCTTCCTCGTCTCCACCTACTCCGTTG ATGCTCGAAGCGCGGGCCAGCAAGGACAGGGCGACCTGTGAATATATCCT CCATGAAGTCGTTCACAAGCTACGTCCGCATTACAAATCCCGTGTCAAGG ACTATATCGGCGAGGGCAAACGCAAAGCGAATGGGTATCAATCCCTCCAT ACAACCCTGGCTTACCGCATTCGAGGAGAAACGACGCCGGTGGAGGTTCA GATCCGAACGAGCGAAATGCACTCTGTGGCAGAGCATGGGTTAGCCGCCC ATTGCCTGTACAAGGGAGATAAGAATTTGGCGGACGTGATTGAACGAGGG CAGCAACAGATGGATGCGGAGATGGGGGAGCAAGGGAAGGAGGAACAGCA GCCGCCGAGGGGGTTTGCTGGGCCGGGGGAATTTCTGACATGGTGTCAAC GGATGCTGGATAAGAGTCATGTGATTGTCTTTTCGCCTGATGGACGACTG TTAAAGCTAGACCGGGGGGCGACATTGCTTGATTTCTTGAAGGCATCTTA TGTGCAGCGAAAAGTGGGGAGAGGAATGGTGACGCGGAGCAGCAGCATCA GCAGCAGTGTTGAGCACGGTGTGAGAAATGGGGAAGAAAAGCACCATCAT CACAAGCTGCAGCCGCAACGGTTTCGGGAGGAACAGATGGAAGAAGCGGC AGAGGAACGAAGGAGGAAGAAGGCGTATGTACAGCTGAAAAAGACAAAGC GGAGCACGCAGGGTATGCTGTTGCTGAACGGACGCACGGCCCCGGCACTG GATCAGGTCTTGGTGACAGGGGACGTCATCTCATACATGTAA back to topprotein sequence of NO05G04190.1 >NO05G04190.1-protein ID=NO05G04190.1-protein|Name=NO05G04190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=764bp MQRASCNEPVHIMTSITTRIKIPRAAGREVGIRRLLLLFHASFLCLFLSL STVGAFAPLGLCSHRRRIAVTVGSSPSSTTPEAAAPDSVVQPTISWDMRV PRRAGLAPPTHSSSRDTRLVKGPRRVPQPTNYGLWDLLIGPVAADFKLVG MPSELGPLANDVHRATEHLTRPERLAVLQALVRSYHAYRLRAPSPFVSQE ATAAHSPTEKAKAKSLTVGAYMEQNVAVIRLLGDSEVDGDTMVAALLCQA PLSVEAVEADFGAPVAGILKGWKAMLAVESQLEIKSLIHEYAHFLWGGQG DNLRNLLLVVGKDWRAVALRVAWKKVEMETRVFGTKKDEIDACWACLNVY ASLAEAAGMSIIKNALEDRAFQFLMPQEHRRVVSELEARRGHYQKVLGQA RREVLQALMEDPIFMSNVERVEVRGRIKSPYSTWKKMKRKGQREGASAGE GGRAVGFEGLYDMVALRVVCTPLYNEEKKDVYSHPSSSSSPSSSSPPTPL MLEARASKDRATCEYILHEVVHKLRPHYKSRVKDYIGEGKRKANGYQSLH TTLAYRIRGETTPVEVQIRTSEMHSVAEHGLAAHCLYKGDKNLADVIERG QQQMDAEMGEQGKEEQQPPRGFAGPGEFLTWCQRMLDKSHVIVFSPDGRL LKLDRGATLLDFLKASYVQRKVGRGMVTRSSSISSSVEHGVRNGEEKHHH HKLQPQRFREEQMEEAAEERRRKKAYVQLKKTKRSTQGMLLLNGRTAPAL DQVLVTGDVISYM* back to topmRNA from alignment at chr5:1080846..1083385+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G04190.1 ID=NO05G04190.1|Name=NO05G04190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2540bp|location=Sequence derived from alignment at chr5:1080846..1083385+ (Nannochloropsis oceanica) ATGCAGCGAGCGAGCTGCAACGAACCCGGTAGGACTGCCCGCAAAAGCTC
AGACGCGGGCGTCAAGACTCTAAGGGTCTGCTTTTGACTATACCCGCCAC
CTTTATCCACATGCAATATCACTCCATGTCTTCCTTTTGTCGTGTTACCA
AGCCATCTGCACAAGGCAGGCGGGCATTTTATTGAACCTAAGGAAATTCA
TTCGCTGCATTTTCTGTTTATGTACCGCGGCCCTTTCTCATGCTTATCCT
CTTCCTCCGAACACAAACATGCACAGTGCATATAATGACGTCGATCACAA
CGAGGATAAAAATTCCGCGGGCAGCGGGAAGAGAAGTGGGCATCAGGAGG
CTGCTCCTTCTTTTCCATGCCAGCTTTCTCTGCCTATTCCTGAGCCTAAG
CACCGTGGGAGCATTTGCCCCCTTGGGGCTTTGTTCGCATCGACGCCGCA
TTGCCGTAACAGTGGGCTCTAGCCCTAGCAGCACCACCCCAGAGGCCGCT
GCACCTGATAGCGTCGTCCAGCCGACAATCTCTTGGGACATGAGGGTTCC
GCGTCGCGCGGGCCTCGCCCCTCCTACTCATTCTTCTTCCCGTGACACCA
GATTAGTCAAAGGACCACGTCGCGTGCCGCAACCCACAAATTACGGTTTG
TGGGACCTATTGATCGGACCAGTGGCTGCTGACTTTAAGCTTGTAGGGAT
GCCTTCAGAGCTCGGGCCTTTGGCAAACGACGTGCATCGTGCCACAGAGC
ATCTGACCCGCCCAGAACGCCTGGCAGTACTTCAGGCATTGGTGCGTTCC
TACCACGCGTACCGTCTCCGAGCGCCCTCTCCTTTTGTGTCCCAAGAGGC
CACAGCAGCCCACTCGCCCACCGAGAAAGCCAAAGCCAAGTCATTGACTG
TAGGGGCATACATGGAGCAAAACGTTGCGGTGATCCGTTTGTTGGGTGAT
TCGGAAGTGGATGGAGATACTATGGTTGCTGCTCTTTTGTGCCAGGCTCC
TCTGTCAGTAGAGGCCGTTGAGGCTGATTTTGGAGCGCCGGTGGCCGGGA
TCTTAAAAGGGTGGAAGGCCATGTTGGCGGTGGAGAGTCAGTTGGAAATT
AAGAGTTTGATTCATGAGTATGCGCACTTTTTGTGGGGGGGTCAGGGGGA
TAATCTGCGTAATTTGCTGTTGGTGGTGGGTAAGGATTGGAGGGCAGTTG
CCTTGAGGGTTGCATGGAAGAAAGTAGAGATGGAGACGAGGGTATTTGGG
ACGAAGAAGGATGAAATTGACGCCTGTTGGGCTTGTTTGAATGTATACGC
CTCTTTGGCAGAAGCGGCGGGGATGAGCATCATTAAGAATGCGTTAGAGG
ATCGGGCGTTTCAGTTCTTGATGCCCCAGGAACACAGGCGGGTGGTGTCA
GAGCTTGAGGCGAGACGAGGACACTACCAGAAGGTTTTGGGGCAGGCGAG
GAGGGAGGTGCTCCAAGCACTGATGGAGGATCCGATCTTTATGAGTAATG
TGGAGAGGGTGGAGGTGAGGGGGAGGATCAAGAGCCCCTATAGCACTTGG
AAGAAGATGAAGAGGAAGGGACAGAGGGAGGGGGCGAGCGCTGGGGAGGG
AGGTCGGGCGGTCGGATTCGAGGGATTGTATGACATGGTGGCTTTGCGCG
TGGTGTGCACGCCGCTGTACAACGAAGAGAAAAAGGACGTGTATTCTCAT
CCTTCTTCCTCCTCCTCGCCGTCTTCCTCGTCTCCACCTACTCCGTTGAT
GCTCGAAGCGCGGGCCAGCAAGGACAGGGCGACCTGTGAATATATCCTCC
ATGAAGTCGTTCACAAGCTACGTCCGCATTACAAATCCCGTGTCAAGGAC
TATATCGGCGAGGGCAAACGCAAAGCGAATGGGTATCAATCCCTCCATAC
AACCCTGGCTTACCGCATTCGAGGAGAAACGACGCCGGTGGAGGTTCAGA
TCCGAACGAGCGAAATGCACTCTGTGGCAGAGCATGGGTTAGCCGCCCAT
TGCCTGTACAAGGGAGATAAGAATTTGGCGGACGTGATTGAACGAGGGCA
GCAACAGATGGATGCGGAGATGGGGGAGCAAGGGAAGGAGGAACAGCAGC
CGCCGAGGGGGTTTGCTGGGCCGGGGGAATTTCTGACATGGTGTCAACGG
ATGCTGGATAAGAGTCATGTGATTGTCTTTTCGCCTGATGGACGACTGTT
AAAGCTAGACCGGGGGGCGACATTGCTTGATTTCTTGAAGGCATCTTATG
TGCAGCGAAAAGTGGGGAGAGGAATGGTGACGCGGAGCAGCAGCATCAGC
AGCAGTGTTGAGCACGGTGTGAGAAATGGGGAAGAAAAGCACCATCATCA
CAAGCTGCAGCCGCAACGGTTTCGGGAGGAACAGATGGAAGAAGCGGCAG
AGGAACGAAGGAGGAAGAAGGCGTATGTACAGCTGAAAAAGACAAAGCGG
AGCACGCAGGGTATGCTGTTGCTGAACGGACGCACGGCCCCGGCACTGGA
TCAGGTCTTGGTGACAGGGGACGTCATCTCATACATGTAA back to topCoding sequence (CDS) from alignment at chr5:1080846..1083385+ >NO05G04190.1 ID=NO05G04190.1|Name=NO05G04190.1|organism=Nannochloropsis oceanica|type=CDS|length=2292bp|location=Sequence derived from alignment at chr5:1080846..1083385+ (Nannochloropsis oceanica) ATGCAGCGAGCGAGCTGCAACGAACCCGTGCATATAATGACGTCGATCAC AACGAGGATAAAAATTCCGCGGGCAGCGGGAAGAGAAGTGGGCATCAGGA GGCTGCTCCTTCTTTTCCATGCCAGCTTTCTCTGCCTATTCCTGAGCCTA AGCACCGTGGGAGCATTTGCCCCCTTGGGGCTTTGTTCGCATCGACGCCG CATTGCCGTAACAGTGGGCTCTAGCCCTAGCAGCACCACCCCAGAGGCCG CTGCACCTGATAGCGTCGTCCAGCCGACAATCTCTTGGGACATGAGGGTT CCGCGTCGCGCGGGCCTCGCCCCTCCTACTCATTCTTCTTCCCGTGACAC CAGATTAGTCAAAGGACCACGTCGCGTGCCGCAACCCACAAATTACGGTT TGTGGGACCTATTGATCGGACCAGTGGCTGCTGACTTTAAGCTTGTAGGG ATGCCTTCAGAGCTCGGGCCTTTGGCAAACGACGTGCATCGTGCCACAGA GCATCTGACCCGCCCAGAACGCCTGGCAGTACTTCAGGCATTGGTGCGTT CCTACCACGCGTACCGTCTCCGAGCGCCCTCTCCTTTTGTGTCCCAAGAG GCCACAGCAGCCCACTCGCCCACCGAGAAAGCCAAAGCCAAGTCATTGAC TGTAGGGGCATACATGGAGCAAAACGTTGCGGTGATCCGTTTGTTGGGTG ATTCGGAAGTGGATGGAGATACTATGGTTGCTGCTCTTTTGTGCCAGGCT CCTCTGTCAGTAGAGGCCGTTGAGGCTGATTTTGGAGCGCCGGTGGCCGG GATCTTAAAAGGGTGGAAGGCCATGTTGGCGGTGGAGAGTCAGTTGGAAA TTAAGAGTTTGATTCATGAGTATGCGCACTTTTTGTGGGGGGGTCAGGGG GATAATCTGCGTAATTTGCTGTTGGTGGTGGGTAAGGATTGGAGGGCAGT TGCCTTGAGGGTTGCATGGAAGAAAGTAGAGATGGAGACGAGGGTATTTG GGACGAAGAAGGATGAAATTGACGCCTGTTGGGCTTGTTTGAATGTATAC GCCTCTTTGGCAGAAGCGGCGGGGATGAGCATCATTAAGAATGCGTTAGA GGATCGGGCGTTTCAGTTCTTGATGCCCCAGGAACACAGGCGGGTGGTGT CAGAGCTTGAGGCGAGACGAGGACACTACCAGAAGGTTTTGGGGCAGGCG AGGAGGGAGGTGCTCCAAGCACTGATGGAGGATCCGATCTTTATGAGTAA TGTGGAGAGGGTGGAGGTGAGGGGGAGGATCAAGAGCCCCTATAGCACTT GGAAGAAGATGAAGAGGAAGGGACAGAGGGAGGGGGCGAGCGCTGGGGAG GGAGGTCGGGCGGTCGGATTCGAGGGATTGTATGACATGGTGGCTTTGCG CGTGGTGTGCACGCCGCTGTACAACGAAGAGAAAAAGGACGTGTATTCTC ATCCTTCTTCCTCCTCCTCGCCGTCTTCCTCGTCTCCACCTACTCCGTTG ATGCTCGAAGCGCGGGCCAGCAAGGACAGGGCGACCTGTGAATATATCCT CCATGAAGTCGTTCACAAGCTACGTCCGCATTACAAATCCCGTGTCAAGG ACTATATCGGCGAGGGCAAACGCAAAGCGAATGGGTATCAATCCCTCCAT ACAACCCTGGCTTACCGCATTCGAGGAGAAACGACGCCGGTGGAGGTTCA GATCCGAACGAGCGAAATGCACTCTGTGGCAGAGCATGGGTTAGCCGCCC ATTGCCTGTACAAGGGAGATAAGAATTTGGCGGACGTGATTGAACGAGGG CAGCAACAGATGGATGCGGAGATGGGGGAGCAAGGGAAGGAGGAACAGCA GCCGCCGAGGGGGTTTGCTGGGCCGGGGGAATTTCTGACATGGTGTCAAC GGATGCTGGATAAGAGTCATGTGATTGTCTTTTCGCCTGATGGACGACTG TTAAAGCTAGACCGGGGGGCGACATTGCTTGATTTCTTGAAGGCATCTTA TGTGCAGCGAAAAGTGGGGAGAGGAATGGTGACGCGGAGCAGCAGCATCA GCAGCAGTGTTGAGCACGGTGTGAGAAATGGGGAAGAAAAGCACCATCAT CACAAGCTGCAGCCGCAACGGTTTCGGGAGGAACAGATGGAAGAAGCGGC AGAGGAACGAAGGAGGAAGAAGGCGTATGTACAGCTGAAAAAGACAAAGC GGAGCACGCAGGGTATGCTGTTGCTGAACGGACGCACGGCCCCGGCACTG GATCAGGTCTTGGTGACAGGGGACGTCATCTCATACATGTAA back to top
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