NO05G03800.1, NO05G03800.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03800.1
Unique NameNO05G03800.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length750
Alignment locationchr5:991006..992872 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:991006..992872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03800.1 vs.
Match: EWM27963.1 (eukaryotic translation initiation factor 1a [Nannochloropsis gaditana]; EWM27964.1 eukaryotic translation initiation factor 1a [Nannochloropsis gaditana])

HSP 1 Score: 282.0 bits (720), Expect = 1.900e-72
Identity = 138/141 (97.87%), Postives = 141/141 (100.00%), Query Frame = 0 
Query:  109 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI 250
            MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQV++MLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLT+EGGSDSEDEIGVDFDEI
Sbjct:    1 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEGGSDSEDEIGVDFDEI 141
The following BLAST results are available for this feature:
BLAST of NO05G03800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27963.11.900e-7297.87eukaryotic translation initiation factor 1a [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03800NO05G03800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03800.1NO05G03800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03800.1.cds1NO05G03800.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03800.1.cds2NO05G03800.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03800.1.cds3NO05G03800.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03800.1.cds4NO05G03800.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03800.1.cds5NO05G03800.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03800.1.cds6NO05G03800.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03800.1.cds7NO05G03800.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03800.1 ID=NO05G03800.1|Name=NO05G03800.1|organism=Nannochloropsis oceanica|type=mRNA|length=750bp
ATGCTGGTTGCAGCGGTGGCAGTGGAGTCGGCGACAGAGAAGGAAAAGGA
ACGGCGGGGCACGGATCGTGATTGTTGTGGTTGTGGTGGCGGGGATGATG
CCGTGGTGATGCTTCGCCAGCCGCAAGAAGATAGCGCGAGGGCTGAAGTC
GACATAGCGGCCCTTGTGCTAGACGAGGACGACGAGACAGCACTCGTCCC
TCGACGCACAGGACAAAACCCTTCGATCCATACCGCCTTGTTGCAGCACC
AGACGCTTAACCCTTCTCTGAGCAGTCGGGAATTTCAAAAACAATACCAG
CAGTACCTATATCAGACAGCAGCCATGCCCAAGAACAAGGGAAAGGGCGG
CAAAAATCGGCGTCGAGGGAAGAACGAGAATGAGGAGACAAAGCGCGACC
TGCTCTTCAAGGAGGAAGGCCAAGAGTACGGACAAGTACTACGTATGTTA
GGCAATGGGCGATGCGAGGTGTATTGCTTTGATGGGAAGAATCGCCTGGC
GCACATTCGAGGGAAGATGCGCAAGAAGGTGTGGGTATCAGCGGGTGATA
TTGTACTGCTGGGCATGCGGGACTACCAGGAGGACAAGGTGGACATCATT
CACAAGTACAACGCGGACGAGGCCCGGAACCTCAAGGCATTCGGTGAACT
CCCAGAGACAGCCAAGATCAATGAGACGGCAATAGACTTGACAATGGAAG
GCGGCTCCGACTCGGAGGACGAGATTGGCGTGGACTTTGACGAGATCTAA
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protein sequence of NO05G03800.1

>NO05G03800.1-protein ID=NO05G03800.1-protein|Name=NO05G03800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MLVAAVAVESATEKEKERRGTDRDCCGCGGGDDAVVMLRQPQEDSARAEV
DIAALVLDEDDETALVPRRTGQNPSIHTALLQHQTLNPSLSSREFQKQYQ
QYLYQTAAMPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVLRML
GNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDII
HKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI*
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mRNA from alignment at chr5:991006..992872+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03800.1 ID=NO05G03800.1|Name=NO05G03800.1|organism=Nannochloropsis oceanica|type=mRNA|length=1867bp|location=Sequence derived from alignment at chr5:991006..992872+ (Nannochloropsis oceanica)
ATGCTGGTTGCAGCGGTGGCAGTGGAGTCGGCGACAGAGAAGGAAAAGGA
ACGGCGGGGCACGGATCGTGATTGTTGTGGTTGTGGTGGCGGGGATGATG
CCGTGGTGATGCTTCGCCAGCCGCAAGAAGATAGCGCGAGGGCTGAAGTC
GACATAGCGGCCCTTGTGCTAGACGAGGACGACGAGACAGCACTCGTCCC
TCGTTGAACAAGCCGTCTCAAGAGCATGACGACCTACGGCCTGTGTTGGT
CATGGATGGGTTCGGTCAAACAAAGAGCAAAAGACGACAGAATCGGGCAT
CAGCAAGCCTCCTCCCCTGGGCGATGACCGAAGGAGGATGCAACGGCGGA
CGAGCTTCCATGCCTTGGCATGCGTATCGTGCGCGCGTTCCTTGACCCAT
GGGGTACAATCTCGCCAGGCACACCTTTTTGTAGCTCAGTCCATGGTGAT
GACGCGGGGTTATGTGGTTTCCAGGCCTTGGGTGTCCGTTGATCACTCCC
CTCCCTCCTCCCCTACCCTCTCGCCTCCCCCTTCCCATCCCACAAAACCT
CAGGACGCACAGGACAAAACCCTTCGATCCATACCGCCTTGTTGCAGCAC
CAGACGCTTAACCCTTCTCTGAGCAGGTAAGTCACTTGGTGGATGGCACA
GCTAGGTGGCTGAGATGTTGTGTCTCGTGTTTCCCCCGTCCTGCTAGTCA
CAAGCGATGCGCGTCGTGGACTGTGGCCATCCCTCCCTCACTCTCTCACC
GCTTTCTCCACCCTATCCTTATAATCATACAGTCGGGAATTTCAAAAACA
ATACCAGCAGTACCTATATCAGACAGCAGCCATGCCCAAGAACAAGGGAA
AGGGCGGCAAAAATCGGCGTCGAGGGAAGAACGAGAATGAGGAGACAAAG
CGCGACCTGCTCTTCAAGGAGGAAGGCCAAGGTCCGTGGGAGCGCGCAGT
GCTCGCAGACAACAGAGGGGAGACGAAAGGAAAAGGAAAGGGGAGATAGT
GATCACGTGAAAGTAGAATCTGGTTCTGCCCTTGGAATTGTGACAGACCC
TTCCCGTCCTCTTCCCTCCCCTTCCTTCTCCTCCTTCTCCCGAAAATAGA
GTACGGACAAGTACTACGTATGTTAGGCAATGGGCGATGCGAGGTGTATT
GCTTTGATGGGAAGAATCGCCTGGCGCACATTCGAGGGAAGATGCGCAAG
AAGGTGTGGGTATCAGCGGTGAGTATTTGGCGGCGTCCTGTTTGGTTGGA
AGGGGTGGAGTGATTGAGGTAGATGGGGGGGAAAGTCAGGGATGTTATTG
TCAACTCTGCCGGAAGATTTTTTTCTCTCAATATGTCCCTCCGCCTTTCT
GTTGTACTCCTTTGCTGTATCACAGGGTGATATTGTACTGCTGGGCATGC
GGGACTACCAGGAGGACAAGGTGGACATCATTCACAAGTACAACGCGGAC
GAGGCCCGGAACCTCAAGGCATTCGGTGAACTCCCAGAGACAGGTACGTG
TCTTTTATTTTTAATGTCTGGATTGGATTTCTGTGTGTTATCTTTAGGTG
ATGGGCAAAGGAAGGCGTGGTTTCAGGCACTCATTACCAGTACTCGTCCT
CCTTCCTTCCTCTCTCCCTCCCCCCTTCTGCTTTTCTAACAGCCAAGATC
AATGAGACGGCAATAGACTTGACAATGGAAGGCGGCTCCGACTCGGAGGA
CGAGATTGGCGTGGACTTTGACGAGGTTCGTTCCATGTCCTTTTCCCATC
CTGTTGAGTTTTTCCCCTACTCTCTTGTTATTGTGGTGACGAAACTGGAT
AAATTTGATTTCGAGAATTTCTCGTTCTTACTGGCTCCATTCTTTTGTAT
GAAACGCACAGATCTAA
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Coding sequence (CDS) from alignment at chr5:991006..992872+

>NO05G03800.1 ID=NO05G03800.1|Name=NO05G03800.1|organism=Nannochloropsis oceanica|type=CDS|length=750bp|location=Sequence derived from alignment at chr5:991006..992872+ (Nannochloropsis oceanica)
ATGCTGGTTGCAGCGGTGGCAGTGGAGTCGGCGACAGAGAAGGAAAAGGA
ACGGCGGGGCACGGATCGTGATTGTTGTGGTTGTGGTGGCGGGGATGATG
CCGTGGTGATGCTTCGCCAGCCGCAAGAAGATAGCGCGAGGGCTGAAGTC
GACATAGCGGCCCTTGTGCTAGACGAGGACGACGAGACAGCACTCGTCCC
TCGACGCACAGGACAAAACCCTTCGATCCATACCGCCTTGTTGCAGCACC
AGACGCTTAACCCTTCTCTGAGCAGTCGGGAATTTCAAAAACAATACCAG
CAGTACCTATATCAGACAGCAGCCATGCCCAAGAACAAGGGAAAGGGCGG
CAAAAATCGGCGTCGAGGGAAGAACGAGAATGAGGAGACAAAGCGCGACC
TGCTCTTCAAGGAGGAAGGCCAAGAGTACGGACAAGTACTACGTATGTTA
GGCAATGGGCGATGCGAGGTGTATTGCTTTGATGGGAAGAATCGCCTGGC
GCACATTCGAGGGAAGATGCGCAAGAAGGTGTGGGTATCAGCGGGTGATA
TTGTACTGCTGGGCATGCGGGACTACCAGGAGGACAAGGTGGACATCATT
CACAAGTACAACGCGGACGAGGCCCGGAACCTCAAGGCATTCGGTGAACT
CCCAGAGACAGCCAAGATCAATGAGACGGCAATAGACTTGACAATGGAAG
GCGGCTCCGACTCGGAGGACGAGATTGGCGTGGACTTTGACGAGATCTAA
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Synonyms
Publications