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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:842106..844755 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G03240.1 vs.
Match: EWM28095.1 (vacuolar iron family transporter [Nannochloropsis gaditana]) HSP 1 Score: 530.8 bits (1366), Expect = 2.700e-147 Identity = 265/296 (89.53%), Postives = 280/296 (94.59%), Query Frame = 0
Query: 1 MELPGQMDGHSNGHANGNGFHATEKTCLVQAAQHAYRLNDIEASRLIHEQKFEAKNHDETHDAVGDYVKSMIFGGLDGILTSFAIVAGAAGGGLPVEVVMVLGFSNIFADAFSMGMGEYLSSKAHNEFVLKEKERESWELQNFREGEIKEMIDIYVERGMEADDAEDVVRKMSKYDNFFVNVMMVEELGLQVPDPDDDIVKEGVVMFLAFAGFGAMPLLGYALIPLCFPHFGPKALFNVACIVTALTLFVMGAVKSKFSTRGWLHSGMEMLVLGGVCALMAYEIGHLVSSLVGVGE 297
ME+ M+GHSNGHA+GNG H TEKT LVQ AQHAYRLND+EASRLIH+QKFEAK HDETHD+VGDYVKSMIFGGLDGILTSFAIVAGAAGGGLPVEVVMVLGFSNIFADAFSMGMGEYLSSKAHNEFV KEKERESWELQNFREGEIKEMIDIYVERGME DDAEDVVRKMSKYD+FFVNVMMVEELGLQVPDP+DDIVKEGVVMFL+FAGFGAMPLLGYALIPLCFP GP LFN+AC VTALTLF+MGAVKSKFSTRGWLHSG+EMLVLGG+CA+MAYEIGHLVSSLVG G+
Sbjct: 1 MEIHTHMNGHSNGHASGNGIHPTEKTSLVQQAQHAYRLNDVEASRLIHQQKFEAKTHDETHDSVGDYVKSMIFGGLDGILTSFAIVAGAAGGGLPVEVVMVLGFSNIFADAFSMGMGEYLSSKAHNEFVFKEKERESWELQNFREGEIKEMIDIYVERGMEPDDAEDVVRKMSKYDDFFVNVMMVEELGLQVPDPNDDIVKEGVVMFLSFAGFGAMPLLGYALIPLCFPSLGPSHLFNIACGVTALTLFIMGAVKSKFSTRGWLHSGLEMLVLGGICAVMAYEIGHLVSSLVGAGD 296
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G03240.1 ID=NO05G03240.1|Name=NO05G03240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1728bp CTCGAAGTGTGTGTCCCCAGGGCACACCATGCCTGCATCAGCACAGTCGT TCCACCTCTTTGCTGGTGGCTGCAACAGGTGAAATGTGTTTACGATGTTG TCATTGGATAAGCCTAAACATCTGCTTGTTGGCAGCAAGCAAGATCATTC TTCCACCACCTCACTAATCTCCCAATGCCCACACCTCAACCACCAGGACA CAGCGCAACAAGGATTAGACCACGCCCATACGTCAGGAGTAGGTCGCTCA ATAGGTTACTGCAGACACGGTAGGCGACCGCCTCTTTCTTGGTGCGCCGC GGCTAGACAGCCTTACCACTGCCGTTGTCCCGGACGACGCCGGCAGCATT TCCAACCCACACAACGACTCCCCGCACCACCATCATGGAGCTGCCCGGTC AGATGGACGGTCACTCTAATGGGCACGCTAACGGAAATGGCTTTCATGCC ACGGAGAAGACGTGCTTAGTCCAGGCAGCTCAGCATGCCTACCGACTAAA TGATATCGAGGCTTCCCGACTAATCCACGAGCAGAAATTTGAGGCGAAGA ATCACGACGAGACGCATGATGCTGTGGGAGACTATGTCAAATCCATGATT TTTGGGGGACTGGACGGCATCCTGACTTCCTTCGCCATTGTTGCTGGCGC GGCTGGAGGTGGGCTGCCGGTTGAGGTGGTAATGGTGTTAGGGTTCAGCA ATATATTCGCGGATGCTTTCAGCATGGGTATGGGGGAGTATCTGAGCAGC AAGGCGCACAATGAGTTTGTGTTGAAGGAGAAAGAGAGGGAGAGTTGGGA GCTGCAAAATTTCCGGGAAGGAGAAATAAAAGAGATGATCGATATTTATG TGGAGAGAGGGATGGAGGCAGATGATGCCGAGGACGTGGTGCGGAAGATG AGCAAGTACGACAACTTTTTTGTCAACGTGATGATGGTGGAGGAGCTGGG GCTGCAAGTGCCAGATCCAGACGACGATATCGTCAAGGAAGGGGTTGTGA TGTTTTTGGCCTTTGCGGGGTTTGGTGCGATGCCCCTGTTGGGCTACGCG CTGATTCCTTTGTGTTTCCCGCATTTTGGACCGAAGGCCTTATTCAATGT TGCGTGCATTGTGACTGCGCTGACGTTATTTGTGATGGGCGCGGTGAAGA GCAAGTTTTCTACGCGGGGATGGCTGCACTCGGGGATGGAGATGTTGGTG CTGGGAGGGGTGTGTGCGCTGATGGCGTATGAAATCGGGCACTTGGTCAG CAGTCTGGTGGGAGTGGGGGAGGTATAGGGAGAGCGGATAAAGGAAGACA AGAGGGCGAGAGTGACAGGAAATGTGAGTGGAGAAGAACTGTGCCTGTCG GTGAATAGAAAGGGGAATATTTTTGGATGGAGGGATGCACGAAGGCCATG GCAGGCGAGGCAGAGGCTAATGAAACTGCGCATAAAGGAAGGAAGGGAAA CAGAAGCAGCAGCCGGACAGCGGCAGGATTAAGAATAATCGAGGGTGAGA TGGTAAATGGTGGTCGTCAGATTTCTATACATACAGCAATCCAACCATAG TGTCGAAATGTTTTGTGCAAGCAATAATCAACCTCATCCAAAAAGATAAG CTACAAACGAAGAAAAAGGCGGTGATGGACCGAGAACGATACAAGACAGA AGACGAAAGAGAAGACGAAAGAGAAGAAAAGGAGGTGAAGAGAAAAAGAA GGAAAACAGCACGGAATATTTGTTCGCA back to topprotein sequence of NO05G03240.1 >NO05G03240.1-protein ID=NO05G03240.1-protein|Name=NO05G03240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp MELPGQMDGHSNGHANGNGFHATEKTCLVQAAQHAYRLNDIEASRLIHEQ KFEAKNHDETHDAVGDYVKSMIFGGLDGILTSFAIVAGAAGGGLPVEVVM VLGFSNIFADAFSMGMGEYLSSKAHNEFVLKEKERESWELQNFREGEIKE MIDIYVERGMEADDAEDVVRKMSKYDNFFVNVMMVEELGLQVPDPDDDIV KEGVVMFLAFAGFGAMPLLGYALIPLCFPHFGPKALFNVACIVTALTLFV MGAVKSKFSTRGWLHSGMEMLVLGGVCALMAYEIGHLVSSLVGVGEV* back to topmRNA from alignment at chr5:842106..844755+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G03240.1 ID=NO05G03240.1|Name=NO05G03240.1|organism=Nannochloropsis oceanica|type=mRNA|length=2650bp|location=Sequence derived from alignment at chr5:842106..844755+ (Nannochloropsis oceanica) CTCGAAGTGTGTGTCCCCAGGGCACACCATGCCTGCATCAGCACAGTCGT
TCCACCTCTTTGCTGGTGGCTGCAACAGGTGAAATGTGTTTACGATGTTG
TCATTGGATAAGCCTAAACATCTGCTTGTTGGCAGCAAGCAAGATCATTC
TTCCACCACCTCACTAATCTCCCAATGCCCACACCTCAACCACCAGGACA
CAGCGCAACAAGGATTAGACCACGCCCATACGTCAGGAGTAGGTCGCTCA
ATAGGTTACTGCAGACACGGTAGGCGACCGCCTCTTTCTTGGTGCGCCGC
GGCTAGACAGCCTTACCACTGCCGTTGTCCCGGACGACGCCGGCAGCATT
TCCAACCCACACAACGACTCCCCGCACCACCATCATGGAGCTGCCCGGTC
AGATGGACGGTCACTCTAATGGGCACGCTAACGGAAATGGCTTTCATGCC
ACGGAGAAGACGTGCTTAGTCCAGGCAGCTCAGCATGCCTACCGACTAAA
TGATATCGAGGCTTCCCGGTACGTACAACCAAAGAAGAGAGCAGGCGAAT
AGCAATGCACTTGTGAATGGGGCGGAGATGAAGGGTACATGCGAGTGGAT
ACGGATGTAGATAACTGCAGAGGTGATGTTATTAATCATTGGTTTTCGGC
CTCCCGTCTCGGGTGCTTTTGCTGAAAAGTCCCATGTAACACGAACCATT
CTGGACGTGCGTCGACTTCCTGTCGGCATGATGTCCCTCATTGCCCGCAA
TCCCTTCCCCTCCGGCTCCTTTGGATCTTGTCCATCCCTTCATATATTTT
TTTCGGAGTCGAGTCCCGGATGCTTTTTGTAAGCAACCCTTCTGGTTTGT
GCTCAACTCCCTCCCTCCCTCTGTTCCTCTTCACCTCACCTCTGCAGACT
AATCCACGAGCAGAAATTTGAGGCGAAGAATCACGACGAGACGCATGATG
CTGTGGGAGACTATGTCAAATCCATGATTTTTGGGGGACTGGACGGCATC
CTGACTTCCTTCGCCATTGTTGCTGGCGCGGCTGGAGGTGGGCTGCCGGT
TGAGGTGGTAATGGTGTTAGGGTTCAGCAATATATTCGCGGATGCTTTCA
GCATGGGTATGGGGGAGTATCTGAGCAGCAAGGCGCACAATGAGTTTGTG
TTGAAGGAGAAAGAGAGGGAGAGTTGGTGAGTGTCCTTATGAGGGAGGAG
GGAGGGAGGGAGGTGGTAGTGGATGCAAGTGGTGAATTTGCAATCGCAGC
AACGGCACCTTTTTTAGTCCTGACATTGCTGACCGGAAGAGATTGATCGG
CATCACATGTTATTATCTGATCTTGCAAGGTTAGATGCACACAAACTCGC
TGAAAGCCTCCTCTCTCTCCATCTTCTTACCTCTCTTACTTCAGGGAGCT
GCAAAATTTCCGGGAAGGAGAAATAAAAGAGATGATCGATATTTATGTGG
AGAGAGGGATGGAGGCAGATGATGCCGAGGTACGTGCATATAATATCTGA
GGGTATACGTAGATGGAAGTGGAGGAGATTGTGCGTTATGTTTTTCCTTT
TATTGAGCGTTGTGCATTTGTTTTCTTCCCTTTTTTGTGCCTTGGGAGGG
AGTGCTTGAGAATTAGAGCGCGGGGTGGAGGAAGTGTGAGGGCGGGTGGC
ACAGACGTGCGTTTTCATGCTCGAAAGATAAGAAGAAAGAGGATAGGGAT
GTGGACGACGAAGTACGGGAGTGGCGACTGTTTTGTTGTCTCCAAGCCGC
TTGATGTGATTCCTTCGTTCACCCTCTCTCGCTCTCTCACTCTTCTTCTC
ACAGGACGTGGTGCGGAAGATGAGCAAGTACGACAACTTTTTTGTCAACG
TGATGATGGTGGAGGAGCTGGGGCTGCAAGTGCCAGATCCAGACGACGAT
ATCGTCAAGGAAGGGGTTGTGATGTTTTTGGCCTTTGCGGGGTTTGGTGC
GATGCCCCTGTTGGGCTACGCGCTGATTCCTTTGTGTTTCCCGCATTTTG
GACCGAAGGCCTTATTCAATGTTGCGTGCATTGTGACTGCGCTGACGTTA
TTTGTGATGGGCGCGGTGAAGAGCAAGTTTTCTACGCGGGGATGGCTGCA
CTCGGGGATGGAGATGTTGGTGCTGGGAGGGGTGTGTGCGCTGATGGCGT
ATGAAATCGGGCACTTGGTCAGCAGTCTGGTGGGAGTGGGGGAGGTATAG
GGAGAGCGGATAAAGGAAGACAAGAGGGCGAGAGTGACAGGAAATGTGAG
TGGAGAAGAACTGTGCCTGTCGGTGAATAGAAAGGGGAATATTTTTGGAT
GGAGGGATGCACGAAGGCCATGGCAGGCGAGGCAGAGGCTAATGAAACTG
CGCATAAAGGAAGGAAGGGAAACAGAAGCAGCAGCCGGACAGCGGCAGGA
TTAAGAATAATCGAGGGTGAGATGGTAAATGGTGGTCGTCAGATTTCTAT
ACATACAGCAATCCAACCATAGTGTCGAAATGTTTTGTGCAAGCAATAAT
CAACCTCATCCAAAAAGATAAGCTACAAACGAAGAAAAAGGCGGTGATGG
ACCGAGAACGATACAAGACAGAAGACGAAAGAGAAGACGAAAGAGAAGAA
AAGGAGGTGAAGAGAAAAAGAAGGAAAACAGCACGGAATATTTGTTCGCA
back to topCoding sequence (CDS) from alignment at chr5:842106..844755+ >NO05G03240.1 ID=NO05G03240.1|Name=NO05G03240.1|organism=Nannochloropsis oceanica|type=CDS|length=894bp|location=Sequence derived from alignment at chr5:842106..844755+ (Nannochloropsis oceanica) ATGGAGCTGCCCGGTCAGATGGACGGTCACTCTAATGGGCACGCTAACGG AAATGGCTTTCATGCCACGGAGAAGACGTGCTTAGTCCAGGCAGCTCAGC ATGCCTACCGACTAAATGATATCGAGGCTTCCCGACTAATCCACGAGCAG AAATTTGAGGCGAAGAATCACGACGAGACGCATGATGCTGTGGGAGACTA TGTCAAATCCATGATTTTTGGGGGACTGGACGGCATCCTGACTTCCTTCG CCATTGTTGCTGGCGCGGCTGGAGGTGGGCTGCCGGTTGAGGTGGTAATG GTGTTAGGGTTCAGCAATATATTCGCGGATGCTTTCAGCATGGGTATGGG GGAGTATCTGAGCAGCAAGGCGCACAATGAGTTTGTGTTGAAGGAGAAAG AGAGGGAGAGTTGGGAGCTGCAAAATTTCCGGGAAGGAGAAATAAAAGAG ATGATCGATATTTATGTGGAGAGAGGGATGGAGGCAGATGATGCCGAGGA CGTGGTGCGGAAGATGAGCAAGTACGACAACTTTTTTGTCAACGTGATGA TGGTGGAGGAGCTGGGGCTGCAAGTGCCAGATCCAGACGACGATATCGTC AAGGAAGGGGTTGTGATGTTTTTGGCCTTTGCGGGGTTTGGTGCGATGCC CCTGTTGGGCTACGCGCTGATTCCTTTGTGTTTCCCGCATTTTGGACCGA AGGCCTTATTCAATGTTGCGTGCATTGTGACTGCGCTGACGTTATTTGTG ATGGGCGCGGTGAAGAGCAAGTTTTCTACGCGGGGATGGCTGCACTCGGG GATGGAGATGTTGGTGCTGGGAGGGGTGTGTGCGCTGATGGCGTATGAAA TCGGGCACTTGGTCAGCAGTCTGGTGGGAGTGGGGGAGGTATAG back to top
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