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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:600321..602120 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G02260.1 vs.
Match: EWM28169.1 (lipoic acid synthetase [Nannochloropsis gaditana]) HSP 1 Score: 570.1 bits (1468), Expect = 5.400e-159 Identity = 283/344 (82.27%), Postives = 305/344 (88.66%), Query Frame = 0
Query: 47 SSARLENLRKQLEEEDAAGIAMSLIPPTIHVPETVSSDDVAPAPRRQKRMEPKPSWLKAVPAEGENYLRLKSTVRKLKLATVCEEARCPNIGECWGGGKEGTATATIMIMGDTCTRGCSFCAVKTSRTPAALDPLEPEHVAQAITEWGLDYVVLTSVDRDDLEDQGSEHFAQTVRGLKTRKPSLLVECLTPDFRGQANLIEHVATSGLDVYAHNLETVERMQRRVRDHRAGYSQSLFVLEHAKKCEPTLLTKTSLMLGVGERPEDIRATLRDLRTAGVDVVTFGQYLRPTKRHMPVKAFVTPERFQEWQVEAEGLGFKYVASGPLVRSSYKAGEFFLKGLLKKQ 391
SS RL+ LR++L+EEDAA P +P+ P RR+KR EPKP WLKAVPAEGENYLRLK+TVRKLKLATVCEEARCPNIGECWGGGK+GTATATIMIMGDTCTRGCSFCAVKTSRTPA LDPLEPEHVA+AI EWGLDYVVLTSVDRDDL DQGSEHFA+TVRGLK RKP+LLVECLTPDFRGQA+LIE VA SGLDVYAHNLETVER+QRRVRDHRAGYSQSLFVLEHAKK P LLTKTSLMLGVGERPED+RATLRDLRTAGVDVVTFGQYLRPTKRHMPV+A++TP +FQ WQ EAE L FKYVASGPLVRSSYKAGEFFLKG+LK++
Sbjct: 44 SSPRLDRLREKLKEEDAAHAGTC--PTHGALPDKEVPKATFPVARRRKRSEPKPEWLKAVPAEGENYLRLKNTVRKLKLATVCEEARCPNIGECWGGGKDGTATATIMIMGDTCTRGCSFCAVKTSRTPAPLDPLEPEHVARAIAEWGLDYVVLTSVDRDDLVDQGSEHFAKTVRGLKARKPTLLVECLTPDFRGQASLIERVALSGLDVYAHNLETVERLQRRVRDHRAGYSQSLFVLEHAKKRAPKLLTKTSLMLGVGERPEDVRATLRDLRTAGVDVVTFGQYLRPTKRHMPVQAYITPAQFQAWQAEAEALNFKYVASGPLVRSSYKAGEFFLKGVLKQR 385
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G02260.1 ID=NO05G02260.1|Name=NO05G02260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1396bp ACCAACAGGAGGTGCAGTCGTACCCACGACGTAAAATCGTTGCCGTCTGC TTGCTACACCAAGAGCAGCACTCTTCAAGCGTCATGAGAGCTGTTGCTCG CCATGCACCGTGTCGAAGTCTGCCTTATGGACAGATCCTCACCCGGCCAG CACCAGCGGCAGCAACATTACCAGAAGCAGCATTACCGCGTAGTTGCAAG GCCAGGGGCTTGGCTTCTTATTCGTCCGCACGCCTGGAAAACCTGCGCAA GCAGCTGGAAGAAGAGGACGCCGCGGGGATTGCCATGTCCCTTATCCCAC CTACCATTCATGTGCCAGAGACTGTCAGTTCCGACGATGTTGCCCCTGCT CCACGACGACAAAAGCGCATGGAACCGAAGCCTAGTTGGCTGAAGGCCGT GCCCGCCGAAGGCGAGAACTACCTCCGGTTGAAGAGTACGGTCCGGAAGC TTAAGCTGGCAACGGTGTGCGAGGAGGCACGCTGCCCAAACATCGGGGAG TGTTGGGGAGGTGGTAAGGAGGGCACGGCGACGGCGACGATCATGATTAT GGGCGACACGTGCACGCGAGGCTGCAGCTTTTGCGCCGTTAAGACAAGCC GAACACCAGCGGCACTGGACCCATTGGAGCCGGAGCACGTTGCACAAGCC ATAACAGAGTGGGGCTTGGACTACGTCGTCTTGACCAGCGTGGATCGGGA CGACTTGGAAGACCAAGGTTCAGAGCATTTCGCCCAAACCGTTCGAGGGC TCAAGACCCGCAAGCCCTCGCTGCTCGTGGAATGCCTGACACCTGATTTT CGCGGCCAAGCTAATCTCATCGAGCATGTGGCCACCTCGGGCCTGGACGT ATATGCACACAACCTTGAGACGGTGGAGCGGATGCAGCGCCGCGTGCGGG ACCACCGGGCAGGCTACTCCCAATCACTCTTCGTTCTGGAGCACGCCAAG AAGTGTGAGCCGACCCTCTTGACCAAAACCTCGCTCATGCTCGGCGTGGG GGAACGGCCCGAGGACATCCGTGCCACTCTGCGAGATCTGAGGACAGCAG GCGTGGACGTCGTCACCTTCGGACAGTACCTGCGGCCTACCAAGCGACAC ATGCCTGTTAAAGCTTTCGTCACACCGGAGCGATTCCAGGAGTGGCAGGT GGAGGCGGAGGGGCTGGGGTTCAAGTATGTCGCCTCGGGACCGCTCGTCC GCTCTTCCTACAAAGCGGGGGAGTTTTTTTTGAAGGGGCTTCTCAAGAAG CAAGAAGAAAGATGAAGACGGCGCCCTCCCAGAAGAGGAGCAGTGGCAAA AGGAGCAGGAGCGTGTTGGCAAAATGTAAACAAATCAAGACTACGAAATA AGGAATCATAGGTGACATACAAAAACACAACCACACGGTGTATCAT back to topprotein sequence of NO05G02260.1 >NO05G02260.1-protein ID=NO05G02260.1-protein|Name=NO05G02260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp MRAVARHAPCRSLPYGQILTRPAPAAATLPEAALPRSCKARGLASYSSAR LENLRKQLEEEDAAGIAMSLIPPTIHVPETVSSDDVAPAPRRQKRMEPKP SWLKAVPAEGENYLRLKSTVRKLKLATVCEEARCPNIGECWGGGKEGTAT ATIMIMGDTCTRGCSFCAVKTSRTPAALDPLEPEHVAQAITEWGLDYVVL TSVDRDDLEDQGSEHFAQTVRGLKTRKPSLLVECLTPDFRGQANLIEHVA TSGLDVYAHNLETVERMQRRVRDHRAGYSQSLFVLEHAKKCEPTLLTKTS LMLGVGERPEDIRATLRDLRTAGVDVVTFGQYLRPTKRHMPVKAFVTPER FQEWQVEAEGLGFKYVASGPLVRSSYKAGEFFLKGLLKKQEER* back to topmRNA from alignment at chr5:600321..602120+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G02260.1 ID=NO05G02260.1|Name=NO05G02260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1800bp|location=Sequence derived from alignment at chr5:600321..602120+ (Nannochloropsis oceanica) ACCAACAGGAGGTGCAGTCGTACCCACGACGTAAAATCGTTGCCGTCTGC
TTGCTACACCAAGAGCAGCACTCTTCAAGCGTCATGAGAGCTGTTGCTCG
CCATGCACCGTGTCGAAGTCTGCCTTATGGACAGATCCTCACCCGGCCAG
CACCAGCGGCAGCAACATTACCAGAAGCAGCATTACCGCGTAGTTGCAAG
GCCAGGGGCTTGGCTTCTTATTCGTCCGCACGCCTGGAAAACCTGCGCAA
GCAGCTGGAAGAAGAGGACGCCGCGGGGATTGCCATGTCCCTTATCCCAC
CTACCATTCATGTGCCAGAGACTGTCAGTTCCGACGATGTTGCCCCTGCT
CCACGACGACAAAAGCGCATGGAACCGAAGCCTAGTACGTGATGGGATCA
TTGTGGTTGCACAGCTTGATGGCATGGTGCTGACCCTCGATGTCCCCCCC
CCAACCCCTCCGACCTCCTCACTTCAGGTTGGCTGAAGGCCGTGCCCGCC
GAAGGCGAGAACTACCTCCGGTTGAAGAGTACGGTACGTATTGATGAATA
TCGAATTGAGTATGTCATTATACCCTGGCTTCTCAAAATCGCCAATCCCC
TTCTCGTATTCTCATCTCCCATTCTATCCCGCGCCGCCTAGGTCCGGAAG
CTTAAGCTGGCAACGGTGTGCGAGGAGGCACGCTGCCCAAACATCGGGGA
GTGTTGGGGAGGTGGTAAGGAGGGCACGGCGACGGCGACGATCATGATTA
TGGGCGACACGTGCACGCGAGGCTGCAGCTTTTGCGCCGTTAAGACAAGC
CGAACACCAGCGGCACTGGGTACGTAGATGAAGGCGTATAAATGGACAGA
GACGAAGAAACGACGGATTTGTTTACCAAATTGCCTTGTTTCCTCATTTT
ACTTCGAATTGACACGATGCAGACCCATTGGAGCCGGAGCACGTTGCACA
AGCCATAACAGAGTGGGGCTTGGACTACGTCGTCTTGACCAGGTAAGGAT
ACGCCGACTCTCCATTTCTTTTCACGACACCACCCCACCTCCATGTCTAC
AAAACCAACCATTGTCTTTCATTGCAATTGTCATCCTCACAGCGTGGATC
GGGACGACTTGGAAGACCAAGGTTCAGAGCATTTCGCCCAAACCGTTCGA
GGGCTCAAGACCCGCAAGCCCTCGCTGCTCGTGGAATGCCTGACACCTGA
TTTTCGCGGCCAAGCTAATCTCATCGAGCATGTGGCCACCTCGGGCCTGG
ACGTATATGCACACAACCTTGAGACGGTGGAGCGGATGCAGCGCCGCGTG
CGGGACCACCGGGCAGGCTACTCCCAATCACTCTTCGTTCTGGAGCACGC
CAAGAAGTGTGAGCCGACCCTCTTGACCAAAACCTCGCTCATGCTCGGCG
TGGGGGAACGGCCCGAGGACATCCGTGCCACTCTGCGAGATCTGAGGACA
GCAGGCGTGGACGTCGTCACCTTCGGACAGTACCTGCGGCCTACCAAGCG
ACACATGCCTGTTAAAGCTTTCGTCACACCGGAGCGATTCCAGGAGTGGC
AGGTGGAGGCGGAGGGGCTGGGGTTCAAGTATGTCGCCTCGGGACCGCTC
GTCCGCTCTTCCTACAAAGCGGGGGAGTTTTTTTTGAAGGGGCTTCTCAA
GAAGCAAGAAGAAAGATGAAGACGGCGCCCTCCCAGAAGAGGAGCAGTGG
CAAAAGGAGCAGGAGCGTGTTGGCAAAATGTAAACAAATCAAGACTACGA
AATAAGGAATCATAGGTGACATACAAAAACACAACCACACGGTGTATCAT
back to topCoding sequence (CDS) from alignment at chr5:600321..602120+ >NO05G02260.1 ID=NO05G02260.1|Name=NO05G02260.1|organism=Nannochloropsis oceanica|type=CDS|length=1182bp|location=Sequence derived from alignment at chr5:600321..602120+ (Nannochloropsis oceanica) ATGAGAGCTGTTGCTCGCCATGCACCGTGTCGAAGTCTGCCTTATGGACA GATCCTCACCCGGCCAGCACCAGCGGCAGCAACATTACCAGAAGCAGCAT TACCGCGTAGTTGCAAGGCCAGGGGCTTGGCTTCTTATTCGTCCGCACGC CTGGAAAACCTGCGCAAGCAGCTGGAAGAAGAGGACGCCGCGGGGATTGC CATGTCCCTTATCCCACCTACCATTCATGTGCCAGAGACTGTCAGTTCCG ACGATGTTGCCCCTGCTCCACGACGACAAAAGCGCATGGAACCGAAGCCT AGTTGGCTGAAGGCCGTGCCCGCCGAAGGCGAGAACTACCTCCGGTTGAA GAGTACGGTCCGGAAGCTTAAGCTGGCAACGGTGTGCGAGGAGGCACGCT GCCCAAACATCGGGGAGTGTTGGGGAGGTGGTAAGGAGGGCACGGCGACG GCGACGATCATGATTATGGGCGACACGTGCACGCGAGGCTGCAGCTTTTG CGCCGTTAAGACAAGCCGAACACCAGCGGCACTGGACCCATTGGAGCCGG AGCACGTTGCACAAGCCATAACAGAGTGGGGCTTGGACTACGTCGTCTTG ACCAGCGTGGATCGGGACGACTTGGAAGACCAAGGTTCAGAGCATTTCGC CCAAACCGTTCGAGGGCTCAAGACCCGCAAGCCCTCGCTGCTCGTGGAAT GCCTGACACCTGATTTTCGCGGCCAAGCTAATCTCATCGAGCATGTGGCC ACCTCGGGCCTGGACGTATATGCACACAACCTTGAGACGGTGGAGCGGAT GCAGCGCCGCGTGCGGGACCACCGGGCAGGCTACTCCCAATCACTCTTCG TTCTGGAGCACGCCAAGAAGTGTGAGCCGACCCTCTTGACCAAAACCTCG CTCATGCTCGGCGTGGGGGAACGGCCCGAGGACATCCGTGCCACTCTGCG AGATCTGAGGACAGCAGGCGTGGACGTCGTCACCTTCGGACAGTACCTGC GGCCTACCAAGCGACACATGCCTGTTAAAGCTTTCGTCACACCGGAGCGA TTCCAGGAGTGGCAGGTGGAGGCGGAGGGGCTGGGGTTCAAGTATGTCGC CTCGGGACCGCTCGTCCGCTCTTCCTACAAAGCGGGGGAGTTTTTTTTGA AGGGGCTTCTCAAGAAGCAAGAAGAAAGATGA back to top
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