NO05G00060.1, NO05G00060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00060.1
Unique NameNO05G00060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length447
Alignment locationchr5:15206..15769 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:15206..15769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00060.1 vs.
Match: CBN80105.1 (dynein light chain [Ectocarpus siliculosus])

HSP 1 Score: 204.1 bits (518), Expect = 2.900e-49
Identity = 103/148 (69.59%), Postives = 118/148 (79.73%), Query Frame = 0 
Query:    1 MVLTQEEIDACRAAFQAFDADNTGTLDVAALRGVLGFLGQKPTEDELFMMIAEVDEEMSGMLDFGELLRVIEVQKMKALAFDDEGDMVDAFVACGGRADKLGHVKRETLVRIIKKDFGLMIDIEELINKVDTDGSGEIEYQEFKMLLS 149
            MVLTQEEID CR AF AFD D +G +DV  LR VL  +GQKPTE+ELF MI+EVD+ MSG +DF E L+VIE QK +A  FDDE DM+DAFVACGGR DK GHVKR  LV+IIK DFGL I+IE+LINK+D DGSGEIE+ EFK LLS
Sbjct:   29 MVLTQEEIDGCRDAFLAFDKDRSGNIDVWELRQVLEAMGQKPTEEELFQMISEVDDNMSGSIDFPEFLKVIENQKTRAQNFDDETDMIDAFVACGGRMDKTGHVKRGALVKIIKVDFGLTINIEDLINKIDADGSGEIEFPEFKALLS 176
The following BLAST results are available for this feature:
BLAST of NO05G00060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN80105.12.900e-4969.59dynein light chain [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00060NO05G00060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00060.1NO05G00060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00060.1.cds1NO05G00060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00060.1.cds2NO05G00060.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00060.1 ID=NO05G00060.1|Name=NO05G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=447bp
ATGGTCTTGACCCAAGAAGAGATCGACGCCTGCCGGGCGGCGTTTCAAGC
CTTTGACGCGGATAACACGGGCACTTTAGACGTGGCGGCGTTGCGTGGGG
TGCTTGGGTTTTTGGGACAAAAGCCCACTGAGGACGAATTATTTATGATG
ATTGCCGAAGTCGACGAAGAGATGAGTGGCATGCTCGACTTTGGGGAGCT
CTTGCGAGTAATTGAGGTGCAAAAGATGAAAGCTTTGGCGTTTGACGACG
AGGGCGACATGGTCGATGCCTTTGTGGCCTGTGGGGGCCGAGCAGACAAG
CTGGGGCACGTAAAACGGGAAACGCTGGTGCGCATTATCAAGAAGGATTT
CGGCTTGATGATTGATATCGAGGAATTGATTAATAAAGTGGACACGGACG
GGTCAGGCGAAATTGAGTACCAGGAGTTTAAGATGCTGCTCTCTTAG
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protein sequence of NO05G00060.1

>NO05G00060.1-protein ID=NO05G00060.1-protein|Name=NO05G00060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MVLTQEEIDACRAAFQAFDADNTGTLDVAALRGVLGFLGQKPTEDELFMM
IAEVDEEMSGMLDFGELLRVIEVQKMKALAFDDEGDMVDAFVACGGRADK
LGHVKRETLVRIIKKDFGLMIDIEELINKVDTDGSGEIEYQEFKMLLS*
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mRNA from alignment at chr5:15206..15769+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00060.1 ID=NO05G00060.1|Name=NO05G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=564bp|location=Sequence derived from alignment at chr5:15206..15769+ (Nannochloropsis oceanica)
ATGGTCTTGACCCAAGAAGAGATCGACGCCTGCCGGGCGGCGTTTCAAGC
CTTTGACGCGGATAACACGGGCACTTTAGACGTGGCGGCGTTGCGTGGGG
TGCTTGGGTTTTTGGGACAAAAGCCCACTGAGGACGAATTATTTATGATG
ATTGCCGAAGTCGACGAAGAGATGAGTGGCATGCTCGACTTTGGGGAGCT
CTTGCGAGTAATTGAGGTGCAAAAGATGAAAGCTTTGGCGTTTGACGACG
AGGGCGACATGGTCGATGCCTTTGTGGCCTGTGGGGGCCGAGCAGACAAG
CTGGGGCACGTAAAACGGGAAACGCTGGTGCGCATTATCAAGAAGGATTT
CGGCTTGATGATTGATATCGAGGAATTGATTAATAAAGTGGACACGGACG
GGTGCGTTTCTTGTGGATGGGAATGGTGGGATGAGTAGGAGGGCGGACGG
ATGAGATCTACATGTCTTATTTTCCATTTTTTCCCCTTCTTATTTCCCAC
ATTCTAACCAATACCCAGGTCAGGCGAAATTGAGTACCAGGAGTTTAAGA
TGCTGCTCTCTTAG
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Coding sequence (CDS) from alignment at chr5:15206..15769+

>NO05G00060.1 ID=NO05G00060.1|Name=NO05G00060.1|organism=Nannochloropsis oceanica|type=CDS|length=447bp|location=Sequence derived from alignment at chr5:15206..15769+ (Nannochloropsis oceanica)
ATGGTCTTGACCCAAGAAGAGATCGACGCCTGCCGGGCGGCGTTTCAAGC
CTTTGACGCGGATAACACGGGCACTTTAGACGTGGCGGCGTTGCGTGGGG
TGCTTGGGTTTTTGGGACAAAAGCCCACTGAGGACGAATTATTTATGATG
ATTGCCGAAGTCGACGAAGAGATGAGTGGCATGCTCGACTTTGGGGAGCT
CTTGCGAGTAATTGAGGTGCAAAAGATGAAAGCTTTGGCGTTTGACGACG
AGGGCGACATGGTCGATGCCTTTGTGGCCTGTGGGGGCCGAGCAGACAAG
CTGGGGCACGTAAAACGGGAAACGCTGGTGCGCATTATCAAGAAGGATTT
CGGCTTGATGATTGATATCGAGGAATTGATTAATAAAGTGGACACGGACG
GGTCAGGCGAAATTGAGTACCAGGAGTTTAAGATGCTGCTCTCTTAG
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Synonyms
Publications