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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:1398844..1402675 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G05030.1 vs.
Match: EWM28925.1 (hypothetical protein Naga_100142g11 [Nannochloropsis gaditana]) HSP 1 Score: 97.8 bits (242), Expect = 5.300e-17 Identity = 41/73 (56.16%), Postives = 54/73 (73.97%), Query Frame = 0
Query: 192 VDRVRDRGVHHTVRGFKAAVGNLKAKLPDTDKECKFDVIKSVAQRKMVCEPAESCVFQFKAGDMMMDRACRLK 265
VDRVRDR VHH RG + + ++++LP TD ECKFDV+ SV +R VC P E+C FQ++ GD+M+DR CRLK
Sbjct: 19 VDRVRDRVVHHAARGLASILRRVRSRLPSTDAECKFDVVTSVGERTTVCVPRETCAFQYRFGDVMLDRCCRLK 91
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G05030.1 ID=NO04G05030.1|Name=NO04G05030.1|organism=Nannochloropsis oceanica|type=mRNA|length=3518bp CTGCTGCTGCTGCTGCTGCTGCTCTTGTCGCCCCCCTCCCCCTCTCATTC TTCCCATATCTACAGAGGACGCAAAAGGACGCATCACTCCTTTTTTCCCT CCTTCCCTTCCTCCCTGCCTTTCTGCCTCTTCTAGCCGAGCCACTCGTTT TTCTAATTGTTGTTTCCCATGTTGTAAAGCTGTGAGCCGATTCACTAGGC GGGTGGCGAGGGCGAGGAGGAGGGAGGGCGGGATGGAGGGCGAGTTTGGG TGAAACGAGGAGATTAAAGTTTGTTCCTCCGCGGAGGTGAGGATGAAGGA TAATAAAGAGGAGGAAAGGAGGGATGAGGAGGAGGAGGAGGAGAAGGAGC TATCGCAGGCCTGGAGGGCGCCGAGGAAGGCCACCACGTCTTGAGGGGTG GGAGAAAAGGAGACGGAGGAAGAGGGAGGGGGGGAAGGAGGGGCTGAGAC CGGAGCAGTCGCTGGTGCGCTGGTGGGACGACGGCGTGCTTGCGATGGAG GAGGAGGAGGCTGGGAGCGGGTAGGTGGAGAGGGGGTGGAGGAAGAAGTG GAGGAAGAGGGGGGAGAGCGAAGAGAAGGAGAAGACTTGCGACTTTTTGT TTCAGCTGGCCCGGACGACGAGGAGGAGAACCGGACGGAGGAAGAGGAGG AGGGAGGGCGGGAAGGGAACGAGGTAGAGGAAGATGAAGGTGGTAAGCCC GACCCATTTCGTTGCTTCCTTTGCTGCTGCTGCTGCTGCACTTCCAACTG CAGGCGTCGTTCAAACGCAGCGATTTCGGCTTCAAGGGATGAATCGATCG CATCTGAGTGGGCGGTATTCATGCTGCTGCTGCCGCTGTGGTGCTTGCGG GAGGGAAATGGGGGAAGAGAGGAAGAAGGGGAGGAGGCAAGAATGGCGGA GGCGGAGGAAGAGAAGATGCGCGCTTGCTTCTTCCGTCCCTTATCATTAG TGCTGCTGCTATTGCTGCTGCTGCTGCCGCATCTGCTCGTCGTGCTGCTG CTATTTCCCTTGCCCTTGCCTTGTTTTACTGCAGCCAGTGCCTTTGAAAA CGATGACGAAAATGATTTGCGAGGTCCCTCGCCGGTGATAGTCCTTTTTA CTTCCCCTCCTCCTTCCCCTCCTCCCAACCCTTCTTGAAGGGAACGAAAA AAGAATGAAGAGGAAGGCGACCTACTGGAGCCGGTGCTGCAATTTAATAC TACCGGTCTCGCTCCCCTCTCCCCAATCGCCGAAGCTGACATTGAAAATA CCCCCATTCGGTCTGTCGAGGACATCCTTAGCCCTCTCGCCTTCCCTTCC TCCCTCCCTTCCTCCTCCTCCCTCCTCCTTCGAAGCAGGACGTTGTGCGG GGATTGCAGGATGGCTTTTCTTCGGGCTTGCTCCTTCAGGGAAAGACGAT ATCTTTCAGGGTCCTTCTGACTCGAGTCCCAAGCAGGACGCGCATGGAGG GGAGAAGGGGAAGAGGATGTAACTGGCTTGTCTCTTTTTTTCACGTATGA GCTTGAGGGAAGGGAAGTGGAGCAGCAGGATGAAGAGACGGACTCGGTAT CGTCGTCTTCTGAGCAGGGGACTGGCTGCTTGACAGGTACGCGGGCTGCC GGTGACCCGAGGCCGCGGACGGTGGCCAAAGGGGAGGGAACAAGGAGAGG AGGGGAGGAGGAGGAACGTTTGGATGGGCGGTGGGTAGTACTTGTCTTGC TCGGGGGCCGACAGGTGCTTGTGGCGAAGAGACCCATCGTTTTGATCCTT TAATTGATGGTGTCTCGACCTGTTATCCTCCTTGGATTGCTTTTGTGTAT AGTGCTGCGTGGAATGGCAGTGGGGAGTAGGGAGGGCGACGAATGGGCGG AAAGAAGCTTTCGCTGACAAAACACAGCGAGCGCGCGGGGAAGAACGGAG ACGATGAGGCGAGCTCGCAGCGCGTTGCGTTCTGTTTATAGCGTAGGGTA CGATGGAGGACAAGAAGAATAAGTGAGAGTGAGAACTGCGTAGTTCTTTG TGAGTTGTCGTTTGTTCCAAAATTCCCGCCTAAACTTGGCGTCATGCGTG GTCGTGCATGCTTCTTCATAAGAATTGTGTGTGAAGTTTGTGCTGCCTTG ACGAAATGCAACGAGGAAAAGGAGACACGTTCCTTGTCATGATACATCGC CTTACCCGAGTGCGAAATGTGCCGCGCTCTACTCATCCCCATTTGCTTCC TTCGCATAAACATTCAACACAGGTAGTAAATCCTTACTTCCCTCTTTCAG AACATGGCCCGATCAAGTCGTCGCAGCAGTCGCAGCAGCAATCGTTCCCG GAGGAGTGGCAGCCGCTCCAGCAGCTCTAAACGCAACCGTGCCTTAATCT TTGGGGCAGTGGCCCTGATCTCGGCTCTCCTTGTTTTGACGCATGCCAGC GAGCCTCACTATGCAGACAACCTTACTACCGCTGCTAATGACACCGCTGA GGATACGTTTCCCGCCACATTCGACGAAACGAAGCTCGGCGCCGACCTCC TGCCCATCAATACCAGCAGCCCCAGGAAGAGCAACACCAGCATTGCCGCC GTACTGTCTCGCCTGAAGTCAACCTTTGGCCGACTCCTCCCGTCGTCGGA CGTGGCGTGTGACTGGAGCTGGGTGCAGCTGAAGTGTGCGCCCAGCGAGT CCTGTAAATTTAAGCCACGCCTCGGGGACCTTCATTTGGGCCGCTCTTGC CGCCTCAGGACAAAGGAAACAGAGAAGGAGGGCGAGAAGGAGGGAAGGAG GGAGCGAAGAGCACTTAAATTGGTGAAAGCTGCCTGGGCGGGAGTCGTGG AGGGGGTAGGGTGTGTGTGGTTGAAGGTAGACCGCGTGAGGGATAGGGGG GTGCACCACACGGTGAGGGGCTTCAAGGCGGCAGTGGGCAATCTGAAGGC CAAACTGCCAGACACAGACAAGGAGTGCAAGTTTGATGTCATCAAAAGCG TGGCGCAGCGCAAGATGGTATGTGAGCCGGCCGAGAGCTGTGTGTTTCAG TTCAAAGCGGGCGACATGATGATGGACCGGGCGTGCCGTTTAAAATAAGA CCAAACTGTGGAGATGCATGGGGATGGGGAGGAGGTAGGAGAGCAGCGGG AGACAGAGGAAGGACACTGAAAGAGGTGTAGGAGTAAAGGGTCACACCGA GAGGGGAACACTGAAAGGGAGAAGAGCCTCGAGAATCGTGTTTGTATGTA CATAGAATGTAAACAACACAAAGTGCAAAGGAAAAAAAGCAAATCTTTTT AGAGACAGCGGCATGAGGCATAATAATTGGTGATGAGCGCGAGGTAGAGA AGACCCTCTTTCCCCCCCGCCGCGATCGATCAGTGGAAGAGGAGAAATTT AATCTCGATGGGCACGTGCACGCTGTCGGTCGCACGCCAGCAACGAATAA GACGTTTTCAAGTTTTGGAACAAATCTGCAGAGACTACGCGACAGGTATA CATAAACCGACAAACAAACAGTCTCTCGACAAACAAGAAAGAAACCCATG CAAGGCTTGTGCTCAAAA back to topprotein sequence of NO04G05030.1 >NO04G05030.1-protein ID=NO04G05030.1-protein|Name=NO04G05030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp MARSSRRSSRSSNRSRRSGSRSSSSKRNRALIFGAVALISALLVLTHASE PHYADNLTTAANDTAEDTFPATFDETKLGADLLPINTSSPRKSNTSIAAV LSRLKSTFGRLLPSSDVACDWSWVQLKCAPSESCKFKPRLGDLHLGRSCR LRTKETEKEGEKEGRRERRALKLVKAAWAGVVEGVGCVWLKVDRVRDRGV HHTVRGFKAAVGNLKAKLPDTDKECKFDVIKSVAQRKMVCEPAESCVFQF KAGDMMMDRACRLK* back to topmRNA from alignment at chr4:1398844..1402675+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G05030.1 ID=NO04G05030.1|Name=NO04G05030.1|organism=Nannochloropsis oceanica|type=mRNA|length=3832bp|location=Sequence derived from alignment at chr4:1398844..1402675+ (Nannochloropsis oceanica) CTGCTGCTGCTGCTGCTGCTGCTCTTGTCGCCCCCCTCCCCCTCTCATTC
TTCCCATATCTACAGAGGACGCAAAAGGACGCATCACTCCTTTTTTCCCT
CCTTCCCTTCCTCCCTGCCTTTCTGCCTCTTCTAGCCGAGCCACTCGTTT
TTCTAATTGTTGTTTCCCATGTTGTAAAGCTGTGAGCCGATTCACTAGGC
GGGTGGCGAGGGCGAGGAGGAGGGAGGGCGGGATGGAGGGCGAGTTTGGG
TGAAACGAGGAGATTAAAGTTTGTTCCTCCGCGGAGGTGAGGATGAAGGA
TAATAAAGAGGAGGAAAGGAGGGATGAGGAGGAGGAGGAGGAGAAGGAGC
TATCGCAGGCCTGGAGGGCGCCGAGGAAGGCCACCACGTCTTGAGGGGTG
GGAGAAAAGGAGACGGAGGAAGAGGGAGGGGGGGAAGGAGGGGCTGAGAC
CGGAGCAGTCGCTGGTGCGCTGGTGGGACGACGGCGTGCTTGCGATGGAG
GAGGAGGAGGCTGGGAGCGGGTAGGTGGAGAGGGGGTGGAGGAAGAAGTG
GAGGAAGAGGGGGGAGAGCGAAGAGAAGGAGAAGACTTGCGACTTTTTGT
TTCAGCTGGCCCGGACGACGAGGAGGAGAACCGGACGGAGGAAGAGGAGG
AGGGAGGGCGGGAAGGGAACGAGGTAGAGGAAGATGAAGGTGGTAAGCCC
GACCCATTTCGTTGCTTCCTTTGCTGCTGCTGCTGCTGCACTTCCAACTG
CAGGCGTCGTTCAAACGCAGCGATTTCGGCTTCAAGGGATGAATCGATCG
CATCTGAGTGGGCGGTATTCATGCTGCTGCTGCCGCTGTGGTGCTTGCGG
GAGGGAAATGGGGGAAGAGAGGAAGAAGGGGAGGAGGCAAGAATGGCGGA
GGCGGAGGAAGAGAAGATGCGCGCTTGCTTCTTCCGTCCCTTATCATTAG
TGCTGCTGCTATTGCTGCTGCTGCTGCCGCATCTGCTCGTCGTGCTGCTG
CTATTTCCCTTGCCCTTGCCTTGTTTTACTGCAGCCAGTGCCTTTGAAAA
CGATGACGAAAATGATTTGCGAGGTCCCTCGCCGGTGATAGTCCTTTTTA
CTTCCCCTCCTCCTTCCCCTCCTCCCAACCCTTCTTGAAGGGAACGAAAA
AAGAATGAAGAGGAAGGCGACCTACTGGAGCCGGTGCTGCAATTTAATAC
TACCGGTCTCGCTCCCCTCTCCCCAATCGCCGAAGCTGACATTGAAAATA
CCCCCATTCGGTCTGTCGAGGACATCCTTAGCCCTCTCGCCTTCCCTTCC
TCCCTCCCTTCCTCCTCCTCCCTCCTCCTTCGAAGCAGGACGTTGTGCGG
GGATTGCAGGATGGCTTTTCTTCGGGCTTGCTCCTTCAGGGAAAGACGAT
ATCTTTCAGGGTCCTTCTGACTCGAGTCCCAAGCAGGACGCGCATGGAGG
GGAGAAGGGGAAGAGGATGTAACTGGCTTGTCTCTTTTTTTCACGTATGA
GCTTGAGGGAAGGGAAGTGGAGCAGCAGGATGAAGAGACGGACTCGGTAT
CGTCGTCTTCTGAGCAGGGGACTGGCTGCTTGACAGGTACGCGGGCTGCC
GGTGACCCGAGGCCGCGGACGGTGGCCAAAGGGGAGGGAACAAGGAGAGG
AGGGGAGGAGGAGGAACGTTTGGATGGGCGGTGGGTAGTACTTGTCTTGC
TCGGGGGCCGACAGGTGCTTGTGGCGAAGAGACCCATCGTTTTGATCCTT
TAATTGATGGTGTCTCGACCTGTTATCCTCCTTGGATTGCTTTTGTGTAT
AGTGCTGCGTGGAATGGCAGTGGGGAGTAGGGAGGGCGACGAATGGGCGG
AAAGAAGCTTTCGCTGACAAAACACAGCGAGCGCGCGGGGAAGAACGGAG
ACGATGAGGCGAGCTCGCAGCGCGTTGCGTTCTGTTTATAGCGTAGGGTA
CGATGGAGGACAAGAAGAATAAGTGAGAGTGAGAACTGCGTAGTTCTTTG
TGAGTTGTCGTTTGTTCCAAAATTCCCGCCTAAACTTGGCGTCATGCGTG
GTCGTGCATGCTTCTTCATAAGAATTGTGTGTGAAGTTTGTGCTGCCTTG
ACGAAATGCAACGAGGAAAAGGAGACACGTTCCTTGTCATGATACATCGC
CTTACCCGAGTGCGAAATGTGCCGCGCTCTACTCATCCCCATTTGCTTCC
TTCGCATAAACATTCAACACAGGTAGTAAATCCTTACTTCCCTCTTTCAG
AACATGGCCCGATCAAGTCGTCGCAGCAGTCGCAGCAGCAATCGTTCCCG
GAGGAGTGGCAGCCGCTCCAGCAGCTCTAAACGCAACCGTGCCTTAATCT
TTGGGGCAGTGGCCCTGATCTCGGCTCTCCTTGTTTTGGTACGTGGCGCT
CCCTCCCTCCTCTCCCCTCCCCTTTCCCTCGCTCTCCGCCACTTCCATTG
CCCTCTCGCCCTCGATGTAAACCATGCATTAGCTCTCCATTAAAGCACAA
TCCAATTATTGTGCTGCGCTCTGCTCCTCTTCACTAATAGGTCGATAATT
TCTTTATCCTCTCATCGCTAGTACCGTCAATGCCCCACGCGCATCCTCTA
CATATTTTCCACACCTATCTCTTACCATCAGCCTTCCTTACTCCTACCTA
CGTATGCTCACCTTTGTCTTTTTCTTTCTCCTGTTCTCCACCCTTTCTTC
AGACGCATGCCAGCGAGCCTCACTATGCAGACAACCTTACTACCGCTGCT
AATGACACCGCTGAGGATACGTTTCCCGCCACATTCGACGAAACGAAGCT
CGGCGCCGACCTCCTGCCCATCAATACCAGCAGCCCCAGGAAGAGCAACA
CCAGCATTGCCGCCGTACTGTCTCGCCTGAAGTCAACCTTTGGCCGACTC
CTCCCGTCGTCGGACGTGGCGTGTGACTGGAGCTGGGTGCAGCTGAAGTG
TGCGCCCAGCGAGTCCTGTAAATTTAAGCCACGCCTCGGGGACCTTCATT
TGGGCCGCTCTTGCCGCCTCAGGACAAAGGAAACAGAGAAGGAGGGCGAG
AAGGAGGGAAGGAGGGAGCGAAGAGCACTTAAATTGGTGAAAGCTGCCTG
GGCGGGAGTCGTGGAGGGGGTAGGGTGTGTGTGGTTGAAGGTAGACCGCG
TGAGGGATAGGGGGGTGCACCACACGGTGAGGGGCTTCAAGGCGGCAGTG
GGCAATCTGAAGGCCAAACTGCCAGACACAGACAAGGAGTGCAAGTTTGA
TGTCATCAAAAGCGTGGCGCAGCGCAAGATGGTATGTGAGCCGGCCGAGA
GCTGTGTGTTTCAGTTCAAAGCGGGCGACATGATGATGGACCGGGCGTGC
CGTTTAAAATAAGACCAAACTGTGGAGATGCATGGGGATGGGGAGGAGGT
AGGAGAGCAGCGGGAGACAGAGGAAGGACACTGAAAGAGGTGTAGGAGTA
AAGGGTCACACCGAGAGGGGAACACTGAAAGGGAGAAGAGCCTCGAGAAT
CGTGTTTGTATGTACATAGAATGTAAACAACACAAAGTGCAAAGGAAAAA
AAGCAAATCTTTTTAGAGACAGCGGCATGAGGCATAATAATTGGTGATGA
GCGCGAGGTAGAGAAGACCCTCTTTCCCCCCCGCCGCGATCGATCAGTGG
AAGAGGAGAAATTTAATCTCGATGGGCACGTGCACGCTGTCGGTCGCACG
CCAGCAACGAATAAGACGTTTTCAAGTTTTGGAACAAATCTGCAGAGACT
ACGCGACAGGTATACATAAACCGACAAACAAACAGTCTCTCGACAAACAA
GAAAGAAACCCATGCAAGGCTTGTGCTCAAAA back to topCoding sequence (CDS) from alignment at chr4:1398844..1402675+ >NO04G05030.1 ID=NO04G05030.1|Name=NO04G05030.1|organism=Nannochloropsis oceanica|type=CDS|length=795bp|location=Sequence derived from alignment at chr4:1398844..1402675+ (Nannochloropsis oceanica) ATGGCCCGATCAAGTCGTCGCAGCAGTCGCAGCAGCAATCGTTCCCGGAG GAGTGGCAGCCGCTCCAGCAGCTCTAAACGCAACCGTGCCTTAATCTTTG GGGCAGTGGCCCTGATCTCGGCTCTCCTTGTTTTGACGCATGCCAGCGAG CCTCACTATGCAGACAACCTTACTACCGCTGCTAATGACACCGCTGAGGA TACGTTTCCCGCCACATTCGACGAAACGAAGCTCGGCGCCGACCTCCTGC CCATCAATACCAGCAGCCCCAGGAAGAGCAACACCAGCATTGCCGCCGTA CTGTCTCGCCTGAAGTCAACCTTTGGCCGACTCCTCCCGTCGTCGGACGT GGCGTGTGACTGGAGCTGGGTGCAGCTGAAGTGTGCGCCCAGCGAGTCCT GTAAATTTAAGCCACGCCTCGGGGACCTTCATTTGGGCCGCTCTTGCCGC CTCAGGACAAAGGAAACAGAGAAGGAGGGCGAGAAGGAGGGAAGGAGGGA GCGAAGAGCACTTAAATTGGTGAAAGCTGCCTGGGCGGGAGTCGTGGAGG GGGTAGGGTGTGTGTGGTTGAAGGTAGACCGCGTGAGGGATAGGGGGGTG CACCACACGGTGAGGGGCTTCAAGGCGGCAGTGGGCAATCTGAAGGCCAA ACTGCCAGACACAGACAAGGAGTGCAAGTTTGATGTCATCAAAAGCGTGG CGCAGCGCAAGATGGTATGTGAGCCGGCCGAGAGCTGTGTGTTTCAGTTC AAAGCGGGCGACATGATGATGGACCGGGCGTGCCGTTTAAAATAA back to top
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