NO04G04440.1, NO04G04440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04440.1
Unique NameNO04G04440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1562
Alignment locationchr4:1206049..1207610 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1206049..1207610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G04440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04440NO04G04440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04440.1NO04G04440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04440.1.cds1NO04G04440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04440.1 ID=NO04G04440.1|Name=NO04G04440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1562bp
CTTCGGAGGATCTATCGCTGCATGGGCCACCTCCTTTTTCTTCCGGAAAT
GGTGTCCACACCATTGTTGCTTGTATTTTGGGTAGACAGGCATGGAATGT
TGCCCTATTTGGCTTCTTATTTGTCCTTGTCTCTTCCGTCAAAGTGTCCT
AGTCCCTACAGTGGTAAAATGTTTGCTTGCCATTGCCAAGCTCAACGGAC
GCTCGGACATGGACTCTCTAAAATATTGACGCCCCAAAGTAAACAAAGCG
TATGTATATATGTATATATGTATATGTATACAATATTGTTCATTTTTGCT
GACCGCCTGAATTTAAACTCGCAATGCGATGCGTAGTTTGCTAATTGCTC
GATTTAATGCAGGTTTCAGACCTTCTGAGGGCGGCTTTCATAGAAAACGT
TGCGGGACATGCACCACCAGCGGGAGGGGAGGGGAGGACAAATGATCCAT
TGCATGCCTAACCTACCACCACACTGCCCCTCGGTCCACCTCCTCAAACA
GAATATGGCGATAGGACGGCCCTACGTTATGCTGGTGCTCGTCACCCTCT
TCCTCGCCACCTTGTCCACCGTGCGTGCCGACGCTTGTCCTACGCCCGAG
TACACCGTGAAGCCCTCTGGCCGAGGCAGGCGTGTGTGGGCAGATAAGGT
GACCAGGATTAGATTGACCATCAAGAATACTTCCCCATTTGCGCTTGACA
ATTACGTGATCCGAATGGGTGTACCTACGGACCACGTCACCTACCAATCA
TATAATGTATTGGGACACACGGCGAGGAGGAAGGCAATCACCAACTTTCT
CACGAAGCCTGATGGTAGCCTTGAGTGGACCCTCTTTGACATGCCTGCAG
GAAAGGACTTCAGATTCCTCATTTTTGTGAAAATTCGTGATTGCGCTTCT
CTTGGCGCCATCTCCTTTCCTATCTCCAGCTTTTATAATAGAGTAAATGA
TACTTGCCCCTTCGACGGACCTGCTGCCAAAATGCGCATCGTCATGCCCA
AAAAAACAAAGGGGAATAGGCGCCCTCCCATGCCCACAGGATGTCCTACC
CCGGCTCCCACCATTGCTCCCAGTGCCGCTCCCAGCCTTGCGCCCATCTA
ATCTGGTTGTGGACCCGAGGTGGTTTTTCTACTTGGTAATACGATGCTTT
GGCGAAGGGGGAGGCATGCGAGTTGCTGCGAAGTAAATGGTGGCCTTTGA
GAAGTGCCATTTGAGAAGTGCCATTTGAGAAGTGCATTCAAATGAAAGGA
AGAAAGAGGACACAGACGCCCTGGCACTCGGGACAGCGGCTGTACGGTGG
AGGAGGAGGCTGAGGACGAGGACGAGGACGGGGACGGGGACGAGGAAGAC
GAGGAAAATTGAATTGCATGTTAGGAGGATATGCGAAAGGAATTGACAAC
GATTAGACGAAGGATAACTACACCCGAAAAGAGGACACGGACGTCGTTGC
ACTCGGAGTAGCAGCCAGATGGCAGAGGACGCGGACGAAGAGGACGAGGA
CGAGAGTTGAATTGTATGAATTGCATCAAGAGAAAGATATGAAAAAGACA
CAGACTACGATG
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protein sequence of NO04G04440.1

>NO04G04440.1-protein ID=NO04G04440.1-protein|Name=NO04G04440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MHHQREGRGGQMIHCMPNLPPHCPSVHLLKQNMAIGRPYVMLVLVTLFLA
TLSTVRADACPTPEYTVKPSGRGRRVWADKVTRIRLTIKNTSPFALDNYV
IRMGVPTDHVTYQSYNVLGHTARRKAITNFLTKPDGSLEWTLFDMPAGKD
FRFLIFVKIRDCASLGAISFPISSFYNRVNDTCPFDGPAAKMRIVMPKKT
KGNRRPPMPTGCPTPAPTIAPSAAPSLAPI*
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mRNA from alignment at chr4:1206049..1207610+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04440.1 ID=NO04G04440.1|Name=NO04G04440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1562bp|location=Sequence derived from alignment at chr4:1206049..1207610+ (Nannochloropsis oceanica)
CTTCGGAGGATCTATCGCTGCATGGGCCACCTCCTTTTTCTTCCGGAAAT
GGTGTCCACACCATTGTTGCTTGTATTTTGGGTAGACAGGCATGGAATGT
TGCCCTATTTGGCTTCTTATTTGTCCTTGTCTCTTCCGTCAAAGTGTCCT
AGTCCCTACAGTGGTAAAATGTTTGCTTGCCATTGCCAAGCTCAACGGAC
GCTCGGACATGGACTCTCTAAAATATTGACGCCCCAAAGTAAACAAAGCG
TATGTATATATGTATATATGTATATGTATACAATATTGTTCATTTTTGCT
GACCGCCTGAATTTAAACTCGCAATGCGATGCGTAGTTTGCTAATTGCTC
GATTTAATGCAGGTTTCAGACCTTCTGAGGGCGGCTTTCATAGAAAACGT
TGCGGGACATGCACCACCAGCGGGAGGGGAGGGGAGGACAAATGATCCAT
TGCATGCCTAACCTACCACCACACTGCCCCTCGGTCCACCTCCTCAAACA
GAATATGGCGATAGGACGGCCCTACGTTATGCTGGTGCTCGTCACCCTCT
TCCTCGCCACCTTGTCCACCGTGCGTGCCGACGCTTGTCCTACGCCCGAG
TACACCGTGAAGCCCTCTGGCCGAGGCAGGCGTGTGTGGGCAGATAAGGT
GACCAGGATTAGATTGACCATCAAGAATACTTCCCCATTTGCGCTTGACA
ATTACGTGATCCGAATGGGTGTACCTACGGACCACGTCACCTACCAATCA
TATAATGTATTGGGACACACGGCGAGGAGGAAGGCAATCACCAACTTTCT
CACGAAGCCTGATGGTAGCCTTGAGTGGACCCTCTTTGACATGCCTGCAG
GAAAGGACTTCAGATTCCTCATTTTTGTGAAAATTCGTGATTGCGCTTCT
CTTGGCGCCATCTCCTTTCCTATCTCCAGCTTTTATAATAGAGTAAATGA
TACTTGCCCCTTCGACGGACCTGCTGCCAAAATGCGCATCGTCATGCCCA
AAAAAACAAAGGGGAATAGGCGCCCTCCCATGCCCACAGGATGTCCTACC
CCGGCTCCCACCATTGCTCCCAGTGCCGCTCCCAGCCTTGCGCCCATCTA
ATCTGGTTGTGGACCCGAGGTGGTTTTTCTACTTGGTAATACGATGCTTT
GGCGAAGGGGGAGGCATGCGAGTTGCTGCGAAGTAAATGGTGGCCTTTGA
GAAGTGCCATTTGAGAAGTGCCATTTGAGAAGTGCATTCAAATGAAAGGA
AGAAAGAGGACACAGACGCCCTGGCACTCGGGACAGCGGCTGTACGGTGG
AGGAGGAGGCTGAGGACGAGGACGAGGACGGGGACGGGGACGAGGAAGAC
GAGGAAAATTGAATTGCATGTTAGGAGGATATGCGAAAGGAATTGACAAC
GATTAGACGAAGGATAACTACACCCGAAAAGAGGACACGGACGTCGTTGC
ACTCGGAGTAGCAGCCAGATGGCAGAGGACGCGGACGAAGAGGACGAGGA
CGAGAGTTGAATTGTATGAATTGCATCAAGAGAAAGATATGAAAAAGACA
CAGACTACGATG
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Coding sequence (CDS) from alignment at chr4:1206049..1207610+

>NO04G04440.1 ID=NO04G04440.1|Name=NO04G04440.1|organism=Nannochloropsis oceanica|type=CDS|length=693bp|location=Sequence derived from alignment at chr4:1206049..1207610+ (Nannochloropsis oceanica)
ATGCACCACCAGCGGGAGGGGAGGGGAGGACAAATGATCCATTGCATGCC
TAACCTACCACCACACTGCCCCTCGGTCCACCTCCTCAAACAGAATATGG
CGATAGGACGGCCCTACGTTATGCTGGTGCTCGTCACCCTCTTCCTCGCC
ACCTTGTCCACCGTGCGTGCCGACGCTTGTCCTACGCCCGAGTACACCGT
GAAGCCCTCTGGCCGAGGCAGGCGTGTGTGGGCAGATAAGGTGACCAGGA
TTAGATTGACCATCAAGAATACTTCCCCATTTGCGCTTGACAATTACGTG
ATCCGAATGGGTGTACCTACGGACCACGTCACCTACCAATCATATAATGT
ATTGGGACACACGGCGAGGAGGAAGGCAATCACCAACTTTCTCACGAAGC
CTGATGGTAGCCTTGAGTGGACCCTCTTTGACATGCCTGCAGGAAAGGAC
TTCAGATTCCTCATTTTTGTGAAAATTCGTGATTGCGCTTCTCTTGGCGC
CATCTCCTTTCCTATCTCCAGCTTTTATAATAGAGTAAATGATACTTGCC
CCTTCGACGGACCTGCTGCCAAAATGCGCATCGTCATGCCCAAAAAAACA
AAGGGGAATAGGCGCCCTCCCATGCCCACAGGATGTCCTACCCCGGCTCC
CACCATTGCTCCCAGTGCCGCTCCCAGCCTTGCGCCCATCTAA
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Synonyms
Publications