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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:1131896..1134268 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G04150.1 vs.
Match: EWM24065.1 (hypothetical protein Naga_100063g14 [Nannochloropsis gaditana]) HSP 1 Score: 147.1 bits (370), Expect = 8.400e-32 Identity = 91/268 (33.96%), Postives = 141/268 (52.61%), Query Frame = 0
Query: 26 KKTGLFQRLTQALQS------DGSNAQEELNAAVSGLTDTGLPDAPFLQD---------TWAQDDDGLSLIKPAFDGDVLSVFRTLTENYKDQLQEIWGQPEVAKALLTNFPMFSGIKGMASIAQ---KEGPLTSADGLSALSAFTDYLAATARVLEEVMDPGKFAAKMQTYQSLKDPVLKDLVARTEKGDVEATLALQQEIVNRELGDIIDLEAFGIRGLEPAAVSSLRNMIKDTEPALYKLILTDDKIAQKFMDDPSAAYREAQAL 276
KKTGLFQR+++AL + DG+ +E+ A D G P P L D W + DDGL +++ + DGD+ + R L KD L W P V +AL+T P+F K + I + ++ + DG+ A F ++ + VL+ + DP KFAAK+Q Y KD L DL A+ +G+ E + + +ELGD+IDL+ G G+EP+ + RN +K+ P +Y ++TD + +K+M+DP A E + L
Sbjct: 47 KKTGLFQRISRALDTGSAMDDDGTPFTDEMWEATR---DEGEPVDPALMDFKNPVERTDAW-KFDDGLKMLQTSMDGDLTNPVRDLVNGAKD-LHAAWAVPHVFRALVTQVPLFQAFKPIQEIIKDKSRDEDYSPEDGVKAAGIFKSFMLRSMDVLDTLRDPEKFAAKLQGYAESKDKTLLDLFAKASRGEDENHKEINNFFMRQELGDVIDLDFLGFSGVEPSFLPGFRNQVKEFAPNMYNALMTDPNM-KKYMEDPFKAVEEGKEL 308
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G04150.1 ID=NO04G04150.1|Name=NO04G04150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1965bp GCAGAAGGGCTTATTCTTTCTGCCGTCCATAAAATGCTTGGCCTCGAGGA GGGGTTTAAATCTGAAGCAGTCCTCTCAGAGGGACGGACTCCTGGTGGAC CTTTAAATCATGGCGCCATGCCTGGTAGCTACTAGCTACCAGCTACCAGT AGGCGCTCACACACCTGTTACCCACATTTAGCGTGCAAGCCACGCTACAA TTGTCTACGTGCTCGTATTCTTATCGCTTTACCACTTATCGCTTTACCAC TATTCGTCACATGTTCGCTCTGGCGATGACCCCCCAACTTGTTGAACAGG ACAACGAGCACATGAGACGACTTTCGATCAATTGATCCCACCCTTACTAC AAACAGCGTGCCCTTACTCAATTTTACCCACCATTATCCTCAATGCCCAG ATTCAAAGCAACCAAGGATGCGGTCGCCTGTTTCCCACCGTATGGTACTC TGTTGCCTGCTCGCCTTTGTAGTCGGCCCGGCTACGGCCAACAAGAAGAC GGGCCTCTTTCAGCGCTTGACCCAGGCCCTGCAAAGCGACGGCAGCAATG CGCAAGAGGAACTGAATGCGGCAGTGTCGGGCCTCACCGATACGGGTTTA CCTGACGCGCCCTTCCTGCAAGACACCTGGGCGCAAGATGATGACGGCCT CTCGCTTATCAAACCTGCCTTTGATGGTGACGTTCTATCCGTCTTCCGTA CCTTGACCGAGAATTACAAGGACCAATTACAAGAAATCTGGGGCCAGCCA GAGGTGGCCAAGGCGTTGTTGACCAACTTCCCCATGTTTAGTGGTATTAA GGGCATGGCAAGCATTGCACAGAAGGAAGGGCCTTTGACGTCTGCGGACG GTCTCTCGGCCCTGAGCGCTTTCACAGACTACCTCGCCGCCACTGCCCGC GTCTTGGAAGAGGTCATGGACCCCGGCAAATTCGCGGCAAAAATGCAAAC GTATCAATCACTGAAAGACCCCGTGCTGAAAGACTTGGTGGCACGGACCG AGAAGGGAGATGTGGAGGCAACGCTGGCGTTGCAGCAAGAGATTGTGAAT AGGGAGCTGGGCGACATTATTGATCTCGAAGCCTTTGGCATCCGCGGTTT GGAACCTGCCGCCGTCAGTAGCCTCCGAAATATGATAAAAGACACGGAGC CAGCTTTGTACAAACTGATACTCACCGACGACAAGATCGCGCAGAAATTC ATGGATGACCCCTCGGCCGCATACCGCGAGGCGCAAGCCCTCAGTCCATC TTTGGCGGAAGCGGCGAAGGTGCTTGCTTCGGGAGGCACCAGGAGATAGT TTGTGGCTGTCAGTGGGAAAGGTACATGTACATCCGTTCAGGGGCAGTGT CAGTGTTTTTTTTTTAAATCACGTCAAGGAGTATGCCCCCTGCCCTTCAG AAGAAAAAAAGCCTCCGCATCTGGCGATCTGACCAGCGTAGGAAAAGTAC AGGACCTACTCACTTGCCAACCCCACGAGGTCGCCACCTCAAGCGCTGCT TCTTCCTGGAATTGCTTCTAGATGCCCGTACGCATTTCCGCAGCCACCTT ACATGGCTGGTGTGCATAGTCTAAATAAATAGGGTCGACAATTGAGAGGG TGAGGAATTGGAGGAGGACGGTTGGGAGAGACGTAGCAGGCAAAGGGGCT ATCCCCGAGGTTCAAAGCTGCCGTCTGCCGCTCATATCCTTTGGCAAGGT TCGAAAGTGTGGATCACGGAGATGTAGAAGTTACAGAACACCCTCAAAAG CTTAGCGTGCCCCGGGATAGTGCCAAAGAGTGGGAAGATGAGGAGGGCAA GCAGCTCATCGAATTGCTCACCTCATCCTACTTGGGCCTAATGCCCACAG ATAGTTTTGCCATTTCACGATGAATAAATTATTCTGTCACATTGCTACCG TACCCGGAGAAGGCGCCATAAAGCAAAAATATCAAACTAAACTAGATACA CAAACATGCCATCAT back to topprotein sequence of NO04G04150.1 >NO04G04150.1-protein ID=NO04G04150.1-protein|Name=NO04G04150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp MRSPVSHRMVLCCLLAFVVGPATANKKTGLFQRLTQALQSDGSNAQEELN AAVSGLTDTGLPDAPFLQDTWAQDDDGLSLIKPAFDGDVLSVFRTLTENY KDQLQEIWGQPEVAKALLTNFPMFSGIKGMASIAQKEGPLTSADGLSALS AFTDYLAATARVLEEVMDPGKFAAKMQTYQSLKDPVLKDLVARTEKGDVE ATLALQQEIVNRELGDIIDLEAFGIRGLEPAAVSSLRNMIKDTEPALYKL ILTDDKIAQKFMDDPSAAYREAQALSPSLAEAAKVLASGGTRR* back to topmRNA from alignment at chr4:1131896..1134268- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G04150.1 ID=NO04G04150.1|Name=NO04G04150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2373bp|location=Sequence derived from alignment at chr4:1131896..1134268- (Nannochloropsis oceanica) GCAGAAGGGCTTATTCTTTCTGCCGTCCATAAAATGCTTGGCCTCGAGGA
GGGGTTTAAATCTGAAGCAGTCCTCTCAGAGGGACGGACTCCTGGTGGAC
CTTTAAATCATGGCGCCATGCCTGGTAGCTACTAGCTACCAGCTACCAGT
AGGCGCTCACACACCTGTTACCCACATTTAGCGTGCAAGCCACGCTACAA
TTGTCTACGTGCTCGTATTCTTATCGCTTTACCACTTATCGCTTTACCAC
TATTCGTCACATGTTCGCTCTGGCGATGACCCCCCAACTTGTTGAACAGG
ACAACGAGCACATGAGACGACTTTCGATCAATTGATCCCACCCTTACTAC
AAACAGCGTGCCCTTACTCAATTTTACCCACCATTATCCTCAATGCCCAG
ATTCAAAGCAACCAAGGATGCGGTCGCCTGTTTCCCACCGTATGGTACTC
TGTTGCCTGCTCGCCTTTGTAGTCGGCCCGGCTACGGCCAACAAGAAGAC
GGGCCTCTTTCAGCGCTTGACCCAGGCCCTGCAAAGCGACGGCAGCAATG
CGCAAGAGGAACTGAATGCGGCAGTGTCGGGCCTCACCGATACGGGTTTA
CCTGACGCGCCCTTCCTGCAAGACACCTGGGCGCAAGATGATGACGGCCT
CTCGCTTATCAAACCTGCCTTTGATGGTGACGTTCTATCCGTCTTCCGTA
CCTTGACCGAGAATTACAAGGACCAATTACAAGAAATCTGGGGCCAGCCA
GAGGTGGCCAAGGCGTTGTTGACCAACTTCCCCATGTTTAGTGGTATTAA
GGGCATGGCAAGCATTGCACAGAAGGAAGGGCCTTTGACGTCTGCGGACG
TACGTCGGGAGGGAAGGATGGAGAGATGTGGATTAAGAGATGAGATAGGG
AGTTGGAATGGAGATATATGAAGGCATTATGCCATGTGCTAAATGTGTCA
TCATATACCTCCCTTTGCATCGAGTAATGACCTCAGTACCTCTTTTCCTC
CCATCTCTGCCAGCTCACTTCCCATTTTCTGCCCTCCTTTCTTCCCATCC
AAAAAGGGTCTCTCGGCCCTGAGCGCTTTCACAGACTACCTCGCCGCCAC
TGCCCGCGTCTTGGAAGAGGTCATGGACCCCGGCAAATTCGCGGCAAAAA
TGCAAACGTATCAATCACTGAAAGACCCCGTGCTGAAAGACTTGGTGGCA
CGGACCGAGAAGGGAGATGTGGAGGCAACGCTGGCGTTGCAGCAAGAGAT
TGTGAATAGGGAGCTGGGCGACAGTACGTGTCTAGAATAAAGGGAGGGTG
GGAGGGAAAAAGGGAAGGCGGTTAGGAGGGTGAGATGGAGGAAGGGTCCT
TATCAGTGCGCTTGCCGTCGTGTCTTGAGCCAGAGCCCTTCTTCAGCTTT
GCTGTCTGCTTGTTTAAGATACCTGGCCCCTATTCCGTCTCTCACCCACT
CTTCATCTCGCCTGACCCATACAGTTATTGATCTCGAAGCCTTTGGCATC
CGCGGTTTGGAACCTGCCGCCGTCAGTAGCCTCCGAAATATGATAAAAGA
CACGGAGCCAGCTTTGTACAAACTGATACTCACCGACGACAAGATCGCGC
AGAAATTCATGGATGACCCCTCGGCCGCATACCGCGAGGCGCAAGCCCTC
AGTCCATCTTTGGCGGAAGCGGCGAAGGTGCTTGCTTCGGGAGGCACCAG
GAGATAGTTTGTGGCTGTCAGTGGGAAAGGTACATGTACATCCGTTCAGG
GGCAGTGTCAGTGTTTTTTTTTTAAATCACGTCAAGGAGTATGCCCCCTG
CCCTTCAGAAGAAAAAAAGCCTCCGCATCTGGCGATCTGACCAGCGTAGG
AAAAGTACAGGACCTACTCACTTGCCAACCCCACGAGGTCGCCACCTCAA
GCGCTGCTTCTTCCTGGAATTGCTTCTAGATGCCCGTACGCATTTCCGCA
GCCACCTTACATGGCTGGTGTGCATAGTCTAAATAAATAGGGTCGACAAT
TGAGAGGGTGAGGAATTGGAGGAGGACGGTTGGGAGAGACGTAGCAGGCA
AAGGGGCTATCCCCGAGGTTCAAAGCTGCCGTCTGCCGCTCATATCCTTT
GGCAAGGTTCGAAAGTGTGGATCACGGAGATGTAGAAGTTACAGAACACC
CTCAAAAGCTTAGCGTGCCCCGGGATAGTGCCAAAGAGTGGGAAGATGAG
GAGGGCAAGCAGCTCATCGAATTGCTCACCTCATCCTACTTGGGCCTAAT
GCCCACAGATAGTTTTGCCATTTCACGATGAATAAATTATTCTGTCACAT
TGCTACCGTACCCGGAGAAGGCGCCATAAAGCAAAAATATCAAACTAAAC
TAGATACACAAACATGCCATCAT back to topCoding sequence (CDS) from alignment at chr4:1131896..1134268- >NO04G04150.1 ID=NO04G04150.1|Name=NO04G04150.1|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at chr4:1131896..1134268- (Nannochloropsis oceanica) ATGCGGTCGCCTGTTTCCCACCGTATGGTACTCTGTTGCCTGCTCGCCTT TGTAGTCGGCCCGGCTACGGCCAACAAGAAGACGGGCCTCTTTCAGCGCT TGACCCAGGCCCTGCAAAGCGACGGCAGCAATGCGCAAGAGGAACTGAAT GCGGCAGTGTCGGGCCTCACCGATACGGGTTTACCTGACGCGCCCTTCCT GCAAGACACCTGGGCGCAAGATGATGACGGCCTCTCGCTTATCAAACCTG CCTTTGATGGTGACGTTCTATCCGTCTTCCGTACCTTGACCGAGAATTAC AAGGACCAATTACAAGAAATCTGGGGCCAGCCAGAGGTGGCCAAGGCGTT GTTGACCAACTTCCCCATGTTTAGTGGTATTAAGGGCATGGCAAGCATTG CACAGAAGGAAGGGCCTTTGACGTCTGCGGACGGTCTCTCGGCCCTGAGC GCTTTCACAGACTACCTCGCCGCCACTGCCCGCGTCTTGGAAGAGGTCAT GGACCCCGGCAAATTCGCGGCAAAAATGCAAACGTATCAATCACTGAAAG ACCCCGTGCTGAAAGACTTGGTGGCACGGACCGAGAAGGGAGATGTGGAG GCAACGCTGGCGTTGCAGCAAGAGATTGTGAATAGGGAGCTGGGCGACAT TATTGATCTCGAAGCCTTTGGCATCCGCGGTTTGGAACCTGCCGCCGTCA GTAGCCTCCGAAATATGATAAAAGACACGGAGCCAGCTTTGTACAAACTG ATACTCACCGACGACAAGATCGCGCAGAAATTCATGGATGACCCCTCGGC CGCATACCGCGAGGCGCAAGCCCTCAGTCCATCTTTGGCGGAAGCGGCGA AGGTGCTTGCTTCGGGAGGCACCAGGAGATAG back to top
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