NO04G03350.1, NO04G03350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03350.1
Unique NameNO04G03350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length963
Alignment locationchr4:923507..925220 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:923507..925220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03350.1 vs.
Match: EWM28668.1 (Vacuolar (H+)-ATPase G subunit [Nannochloropsis gaditana])

HSP 1 Score: 151.0 bits (380), Expect = 3.000e-33
Identity = 93/147 (63.27%), Postives = 101/147 (68.71%), Query Frame = 0 
Query:   33 MASGGMAELRAAEQKAAQIVQEARA-------------------------------------ARGERLKEATVEARRVIEGYRAEKEEQFQEFVKTKYGTSGSQTADLDRQTETELAKLSADFKQNKEAVLSVLVDKVTNVNVDVPE 143
            MASGGMAELRAAEQKAAQIVQEARA                                     +RG+RLKEATVEARRVIEGYR +KE+QFQ+FVKTKYG+SGSQTADLDRQTE ELAKLSADFK NK+ VL VLVDKVTNV   + E
Sbjct:    1 MASGGMAELRAAEQKAAQIVQEARAGNNSDSDMTCPPIVDLHPVSENISCANLMLRCRGRDASRGQRLKEATVEARRVIEGYRDDKEKQFQDFVKTKYGSSGSQTADLDRQTEAELAKLSADFKHNKDVVLDVLVDKVTNVKTYMTE 147
The following BLAST results are available for this feature:
BLAST of NO04G03350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28668.13.000e-3363.27Vacuolar (H+)-ATPase G subunit [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03350NO04G03350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03350.1NO04G03350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03350.1.cds1NO04G03350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03350.1.cds2NO04G03350.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03350.1.cds3NO04G03350.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03350.1.cds4NO04G03350.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03350.1 ID=NO04G03350.1|Name=NO04G03350.1|organism=Nannochloropsis oceanica|type=mRNA|length=963bp
AACGATCACAACTTACGGTCGATGATGCCGTCCTCCTAGGACCTAGATAT
GGTACAGTCTTCTTATCCAAGCATGCCCCAGAGTGAAAAAAAACAGTACT
CCGTAGACTACGTTAGGAATTAGAGAAATTCTCGCTCGGGCTGGAAGCTG
GGCTGGGTGCGTCAGAAGCTCTTGCAAATGAACCAGACAAGATGCACTTC
CCACTCACATATTCCCCGCATCATTATCTTAAACAGGCACAAGCAACCCC
GAGTTCAGTCCATACTAAGCATCATGGCATCCGGAGGCATGGCAGAGCTG
CGGGCGGCTGAGCAGAAGGCGGCCCAGATCGTCCAAGAAGCCCGCGCGGC
TCGTGGCGAGCGGCTCAAGGAGGCAACGGTGGAGGCGCGCAGAGTGATCG
AAGGCTATCGGGCGGAGAAGGAGGAGCAGTTCCAAGAGTTTGTCAAGACG
AAATACGGCACCAGCGGCTCCCAAACTGCGGACCTGGACAGACAGACAGA
GACTGAACTCGCCAAGCTCAGCGCGGACTTCAAGCAAAACAAGGAAGCGG
TGTTGAGCGTGCTGGTGGACAAGGTCACAAATGTGAATGTTGATGTGCCA
GAGGCTTGGGGCGTCTGTACCAAGTACTAAGCTTTATCATTCGTTCAGCA
GGAGAAAGAAAGAGGATGAATGCAGTGCGCTTGGACGCATTCTTTTCAAA
TAATCATTTCCTACGTGTTTTCTTCGCGGTTGTTGCGTTTACATTGAGAG
GATCGACCGCAAATAATTCAATGTGTGTATGTGATGGGGCGTAGCTTTCC
CGGGAAGGGAGGCATGTTATAAACAGTATGTTTTTGAAAAAGTCTGTCGA
TCTGGTCGGGGGGGGGGGCTGTATGAGATAGCAGCACCGGAAGCGTCAGC
GACAACAAAACCAAAAAGAAAGAAAAAAGAAGAGGGAGTGAATGACGAAG
CATTCAGGCAACG
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protein sequence of NO04G03350.1

>NO04G03350.1-protein ID=NO04G03350.1-protein|Name=NO04G03350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MNQTRCTSHSHIPRIIILNRHKQPRVQSILSIMASGGMAELRAAEQKAAQ
IVQEARAARGERLKEATVEARRVIEGYRAEKEEQFQEFVKTKYGTSGSQT
ADLDRQTETELAKLSADFKQNKEAVLSVLVDKVTNVNVDVPEAWGVCTKY
*
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mRNA from alignment at chr4:923507..925220-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03350.1 ID=NO04G03350.1|Name=NO04G03350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1714bp|location=Sequence derived from alignment at chr4:923507..925220- (Nannochloropsis oceanica)
AACGATCACAACTTACGGTCGATGATGCCGTCCTCCTAGGACCTAGATAT
GGTACAGTCTTCTTATCCAAGCATGCCCCAGAGTGAAAAAAAACAGTACT
CCGTAGACTACGTTAGGAATTAGAGAAATTCTCGCTCGGGCTGGAAGCTG
GGCTGGGTGCGTCAGAAGCTCTTGCAAATGAACCAGACAAGATGCACTTC
CCACTCACATATTCCCCGCATCATTATCTTAAACAGGCACAAGCAACCCC
GAGTTCAGTCCATACTAAGCATCATGGCATCCGGAGGCATGGCAGAGCTG
CGGGCGGCTGAGCAGAAGGCGGCCCAGATCGTCCAAGAAGCCCGCGCGGG
TAAGGCAAAGTGCTTGGTGGAGGGAACTCGAGCTGTGTCCAGTGTTTATG
TCGACTCCCTTCCGTTTTGTTTTGTAGGCATCCAATTCGTGATTAGGCAC
GGATATACACAATCGTGATCTGCTTCTGTCGCGCATAAACCTGCGGGTAT
CGTGGTATTGATGTGGTGTCTGCTGTAATGATGTCTCCCGCGCTTTTGGC
ATGTTTGTAAATAGAGAGATTCGTCTGGGCGTCACCTCGATGCGGTCAAA
CGTGATTCCAGGAAGCAAGGGAGTGGAGGTGTTTAGTAGCATTTTTGGTG
GAAGAGAGCCTGAGTTGAAATGCGCTTTCTCGATCTATTTGTTTTCACGT
TTTACCGCCCTCCCTTCCTCATTTATCCCCGCATTCCATATTTCGTTCCC
ACCAACACAGCTCGTGGCGAGCGGCTCAAGGAGGCAACGGTGGAGGCGCG
CAGAGTGATCGAAGGCTATCGGGCGGAGAAGGAGGAGCAGTTCCAAGAGT
TTGTCAAGACGGTGAGAGATGGGGGCGAAATATCTTGTGCCTCAATGGCC
CAACCCTCATTATCGGGCTTTCACTTGAAATGCCATGCCCTCCTCCATTG
CCTTTTGTTGCTCAACCCCCGTTTGAAAGTCGTTGAGTTACAGAACACTC
ACGCTTCTTCACTTCTTTCTCACATTCCTCGTAATCTCTCGTAGAAATAC
GGCACCAGCGGCTCCCAAACTGCGGACCTGGACAGACAGACAGAGACTGA
ACTCGCCAAGCTCAGGTACCGTCTCTTTTTCTCGCATGTATACGATTCCC
TTTTCTTTGAATAATAGCACAAACCATGTTTTGTCCTGAAATGTCGAAAG
ACCATCTTCATTCCCTTGCGGTCGTTCATAAGTGATCCCTTCCACCTTCC
CACCCCGTCAATGAAAACACAGCGCGGACTTCAAGCAAAACAAGGAAGCG
GTGTTGAGCGTGCTGGTGGACAAGGTCACAAATGTGAATGTTGATGTGCC
AGAGGCTTGGGGCGTCTGTACCAAGTACTAAGCTTTATCATTCGTTCAGC
AGGAGAAAGAAAGAGGATGAATGCAGTGCGCTTGGACGCATTCTTTTCAA
ATAATCATTTCCTACGTGTTTTCTTCGCGGTTGTTGCGTTTACATTGAGA
GGATCGACCGCAAATAATTCAATGTGTGTATGTGATGGGGCGTAGCTTTC
CCGGGAAGGGAGGCATGTTATAAACAGTATGTTTTTGAAAAAGTCTGTCG
ATCTGGTCGGGGGGGGGGGCTGTATGAGATAGCAGCACCGGAAGCGTCAG
CGACAACAAAACCAAAAAGAAAGAAAAAAGAAGAGGGAGTGAATGACGAA
GCATTCAGGCAACG
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Coding sequence (CDS) from alignment at chr4:923507..925220-

>NO04G03350.1 ID=NO04G03350.1|Name=NO04G03350.1|organism=Nannochloropsis oceanica|type=CDS|length=453bp|location=Sequence derived from alignment at chr4:923507..925220- (Nannochloropsis oceanica)
ATGAACCAGACAAGATGCACTTCCCACTCACATATTCCCCGCATCATTAT
CTTAAACAGGCACAAGCAACCCCGAGTTCAGTCCATACTAAGCATCATGG
CATCCGGAGGCATGGCAGAGCTGCGGGCGGCTGAGCAGAAGGCGGCCCAG
ATCGTCCAAGAAGCCCGCGCGGCTCGTGGCGAGCGGCTCAAGGAGGCAAC
GGTGGAGGCGCGCAGAGTGATCGAAGGCTATCGGGCGGAGAAGGAGGAGC
AGTTCCAAGAGTTTGTCAAGACGAAATACGGCACCAGCGGCTCCCAAACT
GCGGACCTGGACAGACAGACAGAGACTGAACTCGCCAAGCTCAGCGCGGA
CTTCAAGCAAAACAAGGAAGCGGTGTTGAGCGTGCTGGTGGACAAGGTCA
CAAATGTGAATGTTGATGTGCCAGAGGCTTGGGGCGTCTGTACCAAGTAC
TAA
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Synonyms
Publications