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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr4 | genome | chr4:706774..709269 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G02650.1 vs.
Match: EWM28658.1 (hypothetical protein Naga_100177g12 [Nannochloropsis gaditana]) HSP 1 Score: 678.7 bits (1750), Expect = 2.300e-191 Identity = 403/702 (57.41%), Postives = 494/702 (70.37%), Query Frame = 0
Query: 126 TDESPEKAMEDNELDAEDEEVDAEDEKVDVDDEKLDAEDEELDVEDEELDAEDEDLDSEDEDLDSEDEDLDSEDEDLDSEDEDLDSEDEELDAEDKD-LVAEATSATDL-TGDDEIVTI-AETPLQNTLDTPPNALGSTTFGGDLTEAVYTEDGPEKDMMDEVADSLSNPLSGKLDEELKAEEMASTDAEDD------------------DVDLEDEDLVAEDDDVEAPSVTELTEDVKLTTEAVSDGVLEGAMKDIATSVVSDNVILYISSFDCDLTDINVSETDNYVTCSVAAQASKGVSTISAAFYNVPMTKRMLMHFGEQDLISGNLNSGVWQLDLKIPKAADQGVWSLGFTDQGAFYGLEITDKAGNTVDYAQQAAQETIMPLQTTLTVESYYGNTVAYPQANIQTSSGVLLYGVSCAANEATVTDESKTIICEALVIPDEAGIGKATIYLVGPTGKTVIPLVFDEYSEALLVPATNTTNAMYLLTSTLSVPTWAEAGSYSLPASGAFQSRTLSSAGTVRLVNPQALSSKPTLRVVSVADNFAPRVSSFYCNGGQEVKLDDFDAVPVSCLLTAADEYSGIAYASMHFASPSKNDAVEFSFVPDSPGLGPFPAVTVKNVREAVGAQFPPNTEPGAWTLVRAVVADNSGNYEEYTATELNNKDVQTFFLVQSSSRTFSIAPREGTPAAAEPIPGQATSG 807
T ES EK +D ++A+ E A E A + S+ ++ + L E ED+ E+ D+ D L D + EA TD TG E I +T +Q ++ P NALG T FGG L EAV+T D PEKDMM +VA SL NPL G LDEEL+A + D E + + D D+D + + +VEA VT++TED D +L AMK IA S +V LYI+SF+CDL + VSE+DN VTCSVAA+AS GVSTI+AAFYNVPMTKR+LMHFGE+DLISG++ SGVWQL+L IPKAADQGVWSLGF DQGAFYGLE+TDK GNTV+YA+QAA ++I+PLQT+LTVESY GNTVAYPQAN+QTSSGVL+YG +C ATVT+E+KTIICEALVIPDEAGIG +TIY+VGPT KTV+P+VFDE SEALLVPATN T M+LLTSTL+VPTWAE G+YS+P SGA+Q RTLS A TVRL+NP LS+KP L VVSV+D AP +S+FYCN G++V+L D+D +PV+CLL A D+ SG++YAS+HF SPSK DAVEF+FVP SPGLGPFP +VK V E V + FPP+TEPGAWTL RAV DN+GNY+EYTATEL+N +VQTFFLVQSS++TFSIAP+ GT +P PGQAT+G
Sbjct: 27 TGESTEKNQKDAPVEAKLIETSAPTSS--------------------ETTAPKPEHTSQPSTTENAKDALKEESEDIILPQEEYDTPDNALGKTTFDGSLEEAVFTTDADTGAGEQKEIDGDTIVQEGMEPPSNALGQTAFGGSLEEAVFTTDVPEKDMMKDVATSLDNPLGGPLDEELEAAAASEVDDEMETEADVPEKEVEEKEVQKIEADGTDDDTIVKVTEVEA--VTDVTEDAAAPAVPEED-ILGDAMKAIADSADDASVTLYIASFECDLEHVIVSESDNTVTCSVAAEASHGVSTITAAFYNVPMTKRILMHFGEEDLISGSVRSGVWQLELTIPKAADQGVWSLGFDDQGAFYGLEVTDKKGNTVNYAKQAAMDSIIPLQTSLTVESYAGNTVAYPQANVQTSSGVLIYGAACVDATATVTEEAKTIICEALVIPDEAGIGSSTIYMVGPTKKTVLPIVFDEDSEALLVPATNVTRTMFLLTSTLTVPTWAEPGTYSVPVSGAYQPRTLSGAATVRLINPLTLSAKPALTVVSVSDRSAPILSNFYCNNGRQVQLSDYDPLPVNCLLRATDDLSGVSYASLHFVSPSKTDAVEFAFVPSSPGLGPFPPASVKQVAENVASNFPPDTEPGAWTLARAVTTDNAGNYKEYTATELDNANVQTFFLVQSSTKTFSIAPKPGTAINPDPAPGQATTG 705
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G02650.1 ID=NO04G02650.1|Name=NO04G02650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2496bp
ATGGCTCCCTTCCTAAATCTCAATGTTTTGGTGTTCGTGCTCGTCTGCCT
AGTCGCCACCACAGCTCAAAAAGCGGAGAGGAATGCGACATCCGTCGAGA
AGCCTACGACCGAGGTCGAGACGCTGCCTCTGGTCTCAGAGCCCTCCATT
GAACCTTCAACCCTACCCGACGTGCCAGCCGAAAAGCCGAAGGATGTGGT
GGCGGCGCCTGTACCCGTGATGGAGGAGAAAGAAGAGTTGGTCGTCGAGG
ACGCATCCCCCCGCAAGGCCGACTCAAAAAATGACAAGACCCCCCTTCAG
CAGGATTTAGTGACCTCACCCAATGCCTTAGGTTCGACGACATTTGGAGG
AGATCTGAATGAGGCGGTCTTTGTGACTGATGAGTCCCCCGAAAAGGCAA
TGGAGGATAACGAGCTGGACGCGGAAGATGAAGAAGTAGACGCGGAAGAT
GAAAAAGTGGACGTGGACGATGAAAAACTGGACGCGGAAGATGAGGAACT
TGACGTAGAAGATGAAGAACTTGACGCAGAGGATGAAGACTTGGACTCGG
AAGATGAAGACCTCGATTCGGAAGATGAAGACTTGGACTCGGAAGATGAA
GACCTCGATTCGGAAGATGAAGACCTCGATTCGGAAGATGAAGAGCTTGA
CGCGGAAGATAAAGACCTGGTCGCGGAAGCTACCTCGGCGACAGATTTGA
CTGGAGATGATGAGATTGTGACGATCGCTGAGACCCCTCTCCAGAATACT
CTGGATACTCCGCCCAATGCCTTGGGCTCGACGACGTTTGGAGGGGATCT
CACCGAGGCAGTCTATACAGAAGACGGACCCGAAAAGGACATGATGGACG
AGGTGGCCGACAGCTTGAGCAATCCCCTGAGCGGAAAGCTGGACGAGGAG
CTGAAAGCCGAAGAAATGGCTTCGACGGACGCAGAAGATGACGATGTGGA
CTTGGAGGATGAAGACCTAGTCGCGGAAGATGACGACGTGGAAGCTCCTT
CGGTGACTGAACTGACGGAGGACGTGAAGCTAACGACGGAGGCGGTGTCT
GATGGCGTGTTGGAAGGAGCCATGAAGGACATTGCGACCTCTGTGGTATC
TGATAATGTCATTCTCTACATTTCGTCCTTCGACTGCGACTTGACTGACA
TCAATGTGAGCGAGACGGACAACTACGTGACTTGCTCCGTGGCTGCACAG
GCTTCCAAGGGCGTTTCTACCATTAGCGCTGCGTTTTATAATGTCCCCAT
GACCAAGCGTATGCTCATGCACTTTGGTGAGCAAGACCTCATCTCCGGAA
ACCTCAATTCCGGAGTCTGGCAGCTGGACTTGAAGATTCCCAAGGCCGCT
GATCAGGGGGTATGGAGCTTGGGTTTTACTGATCAGGGCGCATTTTATGG
ATTGGAGATTACGGACAAGGCCGGGAACACGGTTGATTATGCCCAGCAGG
CCGCACAGGAGACGATCATGCCCTTGCAGACGACCCTGACGGTGGAAAGC
TATTATGGCAACACCGTGGCGTACCCGCAGGCGAACATCCAGACTTCCAG
CGGGGTATTACTGTATGGTGTGAGCTGTGCGGCGAACGAGGCGACTGTGA
CGGACGAGAGCAAGACCATCATCTGCGAAGCACTCGTCATTCCTGATGAA
GCTGGCATCGGCAAGGCTACCATCTACCTGGTCGGGCCGACGGGGAAGAC
CGTAATCCCTCTTGTCTTTGACGAGTACTCCGAGGCGTTGCTGGTGCCCG
CGACCAACACGACCAACGCCATGTACCTCCTGACTTCCACCCTCTCCGTT
CCTACCTGGGCCGAGGCTGGCTCTTACAGTCTGCCCGCGTCTGGGGCCTT
CCAATCTCGTACCTTGAGTAGTGCCGGAACAGTACGTCTGGTTAACCCTC
AGGCGCTGTCCAGCAAACCCACCCTGCGAGTAGTGAGCGTTGCCGACAAC
TTTGCCCCGCGCGTGAGCTCATTCTACTGCAATGGTGGCCAAGAAGTCAA
GCTCGATGACTTTGATGCGGTGCCTGTCAGTTGCCTCCTTACCGCCGCTG
ATGAATACTCCGGGATCGCTTACGCCTCGATGCATTTCGCCTCCCCGTCC
AAAAACGATGCGGTTGAATTTTCCTTTGTCCCTGACTCGCCTGGTCTCGG
GCCCTTCCCCGCTGTCACTGTCAAGAATGTACGCGAGGCAGTCGGTGCCC
AATTTCCCCCCAACACTGAACCAGGTGCTTGGACCCTCGTCCGTGCTGTC
GTTGCGGACAACAGTGGCAATTATGAGGAATACACGGCCACCGAGTTGAA
CAACAAGGACGTTCAAACCTTCTTCCTCGTCCAGTCTTCCTCAAGGACAT
TTTCGATCGCTCCGCGGGAGGGTACCCCTGCGGCAGCAGAGCCAATCCCT
GGACAGGCTACTAGTGGCGCGAGTCGTTCGACAATGTCCAAGGTGGCGGT
GGCAATTGGGGCGGTGGCTGTGGTTGTTGTGTGTGCGATGTCATAA back to topprotein sequence of NO04G02650.1 >NO04G02650.1-protein ID=NO04G02650.1-protein|Name=NO04G02650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=832bp
MAPFLNLNVLVFVLVCLVATTAQKAERNATSVEKPTTEVETLPLVSEPSI
EPSTLPDVPAEKPKDVVAAPVPVMEEKEELVVEDASPRKADSKNDKTPLQ
QDLVTSPNALGSTTFGGDLNEAVFVTDESPEKAMEDNELDAEDEEVDAED
EKVDVDDEKLDAEDEELDVEDEELDAEDEDLDSEDEDLDSEDEDLDSEDE
DLDSEDEDLDSEDEELDAEDKDLVAEATSATDLTGDDEIVTIAETPLQNT
LDTPPNALGSTTFGGDLTEAVYTEDGPEKDMMDEVADSLSNPLSGKLDEE
LKAEEMASTDAEDDDVDLEDEDLVAEDDDVEAPSVTELTEDVKLTTEAVS
DGVLEGAMKDIATSVVSDNVILYISSFDCDLTDINVSETDNYVTCSVAAQ
ASKGVSTISAAFYNVPMTKRMLMHFGEQDLISGNLNSGVWQLDLKIPKAA
DQGVWSLGFTDQGAFYGLEITDKAGNTVDYAQQAAQETIMPLQTTLTVES
YYGNTVAYPQANIQTSSGVLLYGVSCAANEATVTDESKTIICEALVIPDE
AGIGKATIYLVGPTGKTVIPLVFDEYSEALLVPATNTTNAMYLLTSTLSV
PTWAEAGSYSLPASGAFQSRTLSSAGTVRLVNPQALSSKPTLRVVSVADN
FAPRVSSFYCNGGQEVKLDDFDAVPVSCLLTAADEYSGIAYASMHFASPS
KNDAVEFSFVPDSPGLGPFPAVTVKNVREAVGAQFPPNTEPGAWTLVRAV
VADNSGNYEEYTATELNNKDVQTFFLVQSSSRTFSIAPREGTPAAAEPIP
GQATSGASRSTMSKVAVAIGAVAVVVVCAMS* back to topmRNA from alignment at chr4:706774..709269+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G02650.1 ID=NO04G02650.1|Name=NO04G02650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2496bp|location=Sequence derived from alignment at chr4:706774..709269+ (Nannochloropsis oceanica)
ATGGCTCCCTTCCTAAATCTCAATGTTTTGGTGTTCGTGCTCGTCTGCCT
AGTCGCCACCACAGCTCAAAAAGCGGAGAGGAATGCGACATCCGTCGAGA
AGCCTACGACCGAGGTCGAGACGCTGCCTCTGGTCTCAGAGCCCTCCATT
GAACCTTCAACCCTACCCGACGTGCCAGCCGAAAAGCCGAAGGATGTGGT
GGCGGCGCCTGTACCCGTGATGGAGGAGAAAGAAGAGTTGGTCGTCGAGG
ACGCATCCCCCCGCAAGGCCGACTCAAAAAATGACAAGACCCCCCTTCAG
CAGGATTTAGTGACCTCACCCAATGCCTTAGGTTCGACGACATTTGGAGG
AGATCTGAATGAGGCGGTCTTTGTGACTGATGAGTCCCCCGAAAAGGCAA
TGGAGGATAACGAGCTGGACGCGGAAGATGAAGAAGTAGACGCGGAAGAT
GAAAAAGTGGACGTGGACGATGAAAAACTGGACGCGGAAGATGAGGAACT
TGACGTAGAAGATGAAGAACTTGACGCAGAGGATGAAGACTTGGACTCGG
AAGATGAAGACCTCGATTCGGAAGATGAAGACTTGGACTCGGAAGATGAA
GACCTCGATTCGGAAGATGAAGACCTCGATTCGGAAGATGAAGAGCTTGA
CGCGGAAGATAAAGACCTGGTCGCGGAAGCTACCTCGGCGACAGATTTGA
CTGGAGATGATGAGATTGTGACGATCGCTGAGACCCCTCTCCAGAATACT
CTGGATACTCCGCCCAATGCCTTGGGCTCGACGACGTTTGGAGGGGATCT
CACCGAGGCAGTCTATACAGAAGACGGACCCGAAAAGGACATGATGGACG
AGGTGGCCGACAGCTTGAGCAATCCCCTGAGCGGAAAGCTGGACGAGGAG
CTGAAAGCCGAAGAAATGGCTTCGACGGACGCAGAAGATGACGATGTGGA
CTTGGAGGATGAAGACCTAGTCGCGGAAGATGACGACGTGGAAGCTCCTT
CGGTGACTGAACTGACGGAGGACGTGAAGCTAACGACGGAGGCGGTGTCT
GATGGCGTGTTGGAAGGAGCCATGAAGGACATTGCGACCTCTGTGGTATC
TGATAATGTCATTCTCTACATTTCGTCCTTCGACTGCGACTTGACTGACA
TCAATGTGAGCGAGACGGACAACTACGTGACTTGCTCCGTGGCTGCACAG
GCTTCCAAGGGCGTTTCTACCATTAGCGCTGCGTTTTATAATGTCCCCAT
GACCAAGCGTATGCTCATGCACTTTGGTGAGCAAGACCTCATCTCCGGAA
ACCTCAATTCCGGAGTCTGGCAGCTGGACTTGAAGATTCCCAAGGCCGCT
GATCAGGGGGTATGGAGCTTGGGTTTTACTGATCAGGGCGCATTTTATGG
ATTGGAGATTACGGACAAGGCCGGGAACACGGTTGATTATGCCCAGCAGG
CCGCACAGGAGACGATCATGCCCTTGCAGACGACCCTGACGGTGGAAAGC
TATTATGGCAACACCGTGGCGTACCCGCAGGCGAACATCCAGACTTCCAG
CGGGGTATTACTGTATGGTGTGAGCTGTGCGGCGAACGAGGCGACTGTGA
CGGACGAGAGCAAGACCATCATCTGCGAAGCACTCGTCATTCCTGATGAA
GCTGGCATCGGCAAGGCTACCATCTACCTGGTCGGGCCGACGGGGAAGAC
CGTAATCCCTCTTGTCTTTGACGAGTACTCCGAGGCGTTGCTGGTGCCCG
CGACCAACACGACCAACGCCATGTACCTCCTGACTTCCACCCTCTCCGTT
CCTACCTGGGCCGAGGCTGGCTCTTACAGTCTGCCCGCGTCTGGGGCCTT
CCAATCTCGTACCTTGAGTAGTGCCGGAACAGTACGTCTGGTTAACCCTC
AGGCGCTGTCCAGCAAACCCACCCTGCGAGTAGTGAGCGTTGCCGACAAC
TTTGCCCCGCGCGTGAGCTCATTCTACTGCAATGGTGGCCAAGAAGTCAA
GCTCGATGACTTTGATGCGGTGCCTGTCAGTTGCCTCCTTACCGCCGCTG
ATGAATACTCCGGGATCGCTTACGCCTCGATGCATTTCGCCTCCCCGTCC
AAAAACGATGCGGTTGAATTTTCCTTTGTCCCTGACTCGCCTGGTCTCGG
GCCCTTCCCCGCTGTCACTGTCAAGAATGTACGCGAGGCAGTCGGTGCCC
AATTTCCCCCCAACACTGAACCAGGTGCTTGGACCCTCGTCCGTGCTGTC
GTTGCGGACAACAGTGGCAATTATGAGGAATACACGGCCACCGAGTTGAA
CAACAAGGACGTTCAAACCTTCTTCCTCGTCCAGTCTTCCTCAAGGACAT
TTTCGATCGCTCCGCGGGAGGGTACCCCTGCGGCAGCAGAGCCAATCCCT
GGACAGGCTACTAGTGGCGCGAGTCGTTCGACAATGTCCAAGGTGGCGGT
GGCAATTGGGGCGGTGGCTGTGGTTGTTGTGTGTGCGATGTCATAA back to topCoding sequence (CDS) from alignment at chr4:706774..709269+ >NO04G02650.1 ID=NO04G02650.1|Name=NO04G02650.1|organism=Nannochloropsis oceanica|type=CDS|length=2496bp|location=Sequence derived from alignment at chr4:706774..709269+ (Nannochloropsis oceanica)
ATGGCTCCCTTCCTAAATCTCAATGTTTTGGTGTTCGTGCTCGTCTGCCT
AGTCGCCACCACAGCTCAAAAAGCGGAGAGGAATGCGACATCCGTCGAGA
AGCCTACGACCGAGGTCGAGACGCTGCCTCTGGTCTCAGAGCCCTCCATT
GAACCTTCAACCCTACCCGACGTGCCAGCCGAAAAGCCGAAGGATGTGGT
GGCGGCGCCTGTACCCGTGATGGAGGAGAAAGAAGAGTTGGTCGTCGAGG
ACGCATCCCCCCGCAAGGCCGACTCAAAAAATGACAAGACCCCCCTTCAG
CAGGATTTAGTGACCTCACCCAATGCCTTAGGTTCGACGACATTTGGAGG
AGATCTGAATGAGGCGGTCTTTGTGACTGATGAGTCCCCCGAAAAGGCAA
TGGAGGATAACGAGCTGGACGCGGAAGATGAAGAAGTAGACGCGGAAGAT
GAAAAAGTGGACGTGGACGATGAAAAACTGGACGCGGAAGATGAGGAACT
TGACGTAGAAGATGAAGAACTTGACGCAGAGGATGAAGACTTGGACTCGG
AAGATGAAGACCTCGATTCGGAAGATGAAGACTTGGACTCGGAAGATGAA
GACCTCGATTCGGAAGATGAAGACCTCGATTCGGAAGATGAAGAGCTTGA
CGCGGAAGATAAAGACCTGGTCGCGGAAGCTACCTCGGCGACAGATTTGA
CTGGAGATGATGAGATTGTGACGATCGCTGAGACCCCTCTCCAGAATACT
CTGGATACTCCGCCCAATGCCTTGGGCTCGACGACGTTTGGAGGGGATCT
CACCGAGGCAGTCTATACAGAAGACGGACCCGAAAAGGACATGATGGACG
AGGTGGCCGACAGCTTGAGCAATCCCCTGAGCGGAAAGCTGGACGAGGAG
CTGAAAGCCGAAGAAATGGCTTCGACGGACGCAGAAGATGACGATGTGGA
CTTGGAGGATGAAGACCTAGTCGCGGAAGATGACGACGTGGAAGCTCCTT
CGGTGACTGAACTGACGGAGGACGTGAAGCTAACGACGGAGGCGGTGTCT
GATGGCGTGTTGGAAGGAGCCATGAAGGACATTGCGACCTCTGTGGTATC
TGATAATGTCATTCTCTACATTTCGTCCTTCGACTGCGACTTGACTGACA
TCAATGTGAGCGAGACGGACAACTACGTGACTTGCTCCGTGGCTGCACAG
GCTTCCAAGGGCGTTTCTACCATTAGCGCTGCGTTTTATAATGTCCCCAT
GACCAAGCGTATGCTCATGCACTTTGGTGAGCAAGACCTCATCTCCGGAA
ACCTCAATTCCGGAGTCTGGCAGCTGGACTTGAAGATTCCCAAGGCCGCT
GATCAGGGGGTATGGAGCTTGGGTTTTACTGATCAGGGCGCATTTTATGG
ATTGGAGATTACGGACAAGGCCGGGAACACGGTTGATTATGCCCAGCAGG
CCGCACAGGAGACGATCATGCCCTTGCAGACGACCCTGACGGTGGAAAGC
TATTATGGCAACACCGTGGCGTACCCGCAGGCGAACATCCAGACTTCCAG
CGGGGTATTACTGTATGGTGTGAGCTGTGCGGCGAACGAGGCGACTGTGA
CGGACGAGAGCAAGACCATCATCTGCGAAGCACTCGTCATTCCTGATGAA
GCTGGCATCGGCAAGGCTACCATCTACCTGGTCGGGCCGACGGGGAAGAC
CGTAATCCCTCTTGTCTTTGACGAGTACTCCGAGGCGTTGCTGGTGCCCG
CGACCAACACGACCAACGCCATGTACCTCCTGACTTCCACCCTCTCCGTT
CCTACCTGGGCCGAGGCTGGCTCTTACAGTCTGCCCGCGTCTGGGGCCTT
CCAATCTCGTACCTTGAGTAGTGCCGGAACAGTACGTCTGGTTAACCCTC
AGGCGCTGTCCAGCAAACCCACCCTGCGAGTAGTGAGCGTTGCCGACAAC
TTTGCCCCGCGCGTGAGCTCATTCTACTGCAATGGTGGCCAAGAAGTCAA
GCTCGATGACTTTGATGCGGTGCCTGTCAGTTGCCTCCTTACCGCCGCTG
ATGAATACTCCGGGATCGCTTACGCCTCGATGCATTTCGCCTCCCCGTCC
AAAAACGATGCGGTTGAATTTTCCTTTGTCCCTGACTCGCCTGGTCTCGG
GCCCTTCCCCGCTGTCACTGTCAAGAATGTACGCGAGGCAGTCGGTGCCC
AATTTCCCCCCAACACTGAACCAGGTGCTTGGACCCTCGTCCGTGCTGTC
GTTGCGGACAACAGTGGCAATTATGAGGAATACACGGCCACCGAGTTGAA
CAACAAGGACGTTCAAACCTTCTTCCTCGTCCAGTCTTCCTCAAGGACAT
TTTCGATCGCTCCGCGGGAGGGTACCCCTGCGGCAGCAGAGCCAATCCCT
GGACAGGCTACTAGTGGCGCGAGTCGTTCGACAATGTCCAAGGTGGCGGT
GGCAATTGGGGCGGTGGCTGTGGTTGTTGTGTGTGCGATGTCATAA back to top
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