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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:638136..639744 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G02220.1 vs.
Match: EWM28642.1 (tRNA-splicing endonuclease [Nannochloropsis gaditana]) HSP 1 Score: 387.1 bits (993), Expect = 6.900e-104 Identity = 213/335 (63.58%), Postives = 250/335 (74.63%), Query Frame = 0
Query: 1 MEVDESVQRLLAGCGRLCADGGDEDVEDREDGGPTKRPRNEEFDEEDEDSGQPLVAADDVATNLKVWARTLQRPPKGNLKTYSEGLWRPDKQLCRIIKTRGNDLRSMGFPYEGDIHLYPEETLFLVERCKLEVGNLTTPELYEAVDLYHYLTYAYFRQTSLIIFRADPSCPVGVAFEAHAPSSQFKKTAQNYPIFYIMFGGTRAPVPTDEKMVAIFEWAKGVPVKYAMISDEGGVFAVNLAHSSLENHKPLATVAAAAADAGGGARAITSSVDVVCGDGEGGQRQQQGNGGVSGRH--LSRNQRREEERAKHQQGQQELRQRQQLIQQQQKRNEG 334
MEVDESV LLA G+L G+E + E+ +R RNEEF+EEDE+ G PLVAADDV NL+VWARTL+RPPKGNLKTY EGLWRPDKQLCRIIKTRGNDLRSMGFPYEGD HL+PEETL+LVERCKLEVGNLTTPELYEAVDL HYLTYAYFRQTSLI+FRA+PSCPVGVAFEA+APSSQF+KTA+ +PIFYIM+GGTR PVP++E+++A+F+WAKGVPVKYAM+S +GGVFAVN+AH LEN T AAA + V C +R ++G+ GR L R RRE ER +HQ+ + Q +Q EG
Sbjct: 1 MEVDESVGHLLA-VGQLSEREGEEG-DAHEEELSKERHRNEEFEEEDEEEGLPLVAADDVLGNLQVWARTLERPPKGNLKTYCEGLWRPDKQLCRIIKTRGNDLRSMGFPYEGDTHLFPEETLYLVERCKLEVGNLTTPELYEAVDLQHYLTYAYFRQTSLIVFRAEPSCPVGVAFEAYAPSSQFRKTAREHPIFYIMYGGTRDPVPSEEELMAVFKWAKGVPVKYAMVSGDGGVFAVNIAHWPLENKTQTDTRGKAAA-----------ATVVSCEQ----ERGKEGDEDTEGRRHKLCRKDRREMERQRHQEALRSKEQECHDLQSGNDEKEG 318
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G02220.1 ID=NO04G02220.1|Name=NO04G02220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1363bp ACAGGCATTAAAAGCACGTCATGGAAGTGGACGAGTCAGTTCAGCGGCTG TTGGCCGGGTGTGGGCGACTATGCGCCGACGGAGGGGACGAGGATGTGGA GGACAGGGAGGATGGCGGGCCTACCAAGCGGCCTCGCAACGAAGAGTTTG ACGAGGAGGACGAGGACAGTGGACAACCTTTGGTGGCTGCGGACGACGTG GCAACCAACCTCAAGGTATGGGCACGGACACTGCAGCGTCCGCCCAAGGG AAATCTCAAGACTTACAGCGAAGGCCTGTGGCGCCCCGACAAGCAGCTCT GTCGCATTATTAAGACCCGCGGAAACGATTTACGGTCCATGGGCTTCCCC TATGAGGGCGACATACACCTCTACCCGGAGGAAACCCTCTTCCTCGTCGA ACGCTGCAAGTTGGAAGTAGGAAACCTAACCACCCCCGAACTCTACGAAG CCGTGGATTTGTACCATTATCTGACATATGCTTACTTCCGTCAGACCAGC TTAATTATCTTTCGCGCGGATCCCTCCTGTCCTGTAGGAGTGGCCTTTGA GGCCCACGCGCCCTCGTCTCAATTTAAGAAAACCGCGCAGAATTATCCTA TCTTTTACATCATGTTCGGAGGCACCCGTGCCCCAGTCCCGACCGACGAA AAGATGGTAGCAATCTTTGAATGGGCCAAGGGTGTGCCTGTTAAGTACGC CATGATCTCAGATGAAGGAGGGGTTTTTGCTGTAAATCTAGCGCATAGCT CCTTGGAGAACCACAAGCCCCTGGCAACAGTGGCAGCGGCTGCAGCCGAC GCGGGGGGCGGGGCGAGGGCTATTACTTCATCTGTTGATGTGGTATGTGG AGATGGAGAAGGGGGGCAGCGGCAGCAGCAGGGGAATGGAGGCGTGAGTG GTCGTCATCTGTCTAGGAACCAGCGTCGAGAGGAGGAGCGGGCAAAACAT CAACAAGGGCAGCAGGAGTTGCGGCAACGGCAGCAGCTCATACAGCAGCA GCAGAAAAGAAATGAAGGGTGTGCAGGGGAGGGACCGATGCAGCGACAGG AACAGGAAAAGCAATTGCAGACAGAGGCGGAAGTAGTGAGGAGGTTGGAC GAGGAAGGGCAGCAGGCAGAAATTGATGTGCGAGCAGCACCGGCAGAAGG CGAAATAGGAGTGATATTAACAAAGGAAGGTGGTAGGAGTTCCACGCCGG ATGACCATGCAAAGCAGGTGTCGCCAACGGAAGAGGATGATGTTGTAGGA AGAGGAACAGAAAGAGTGGAGGAGGCAATCACGGCGTAGGACCGTGGAAG TAAAAAAGCAGCTCATCAATATTTTTAAAACAGCCCTATACCAAAACAAC ATAACACCCCATA back to topprotein sequence of NO04G02220.1 >NO04G02220.1-protein ID=NO04G02220.1-protein|Name=NO04G02220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=423bp MEVDESVQRLLAGCGRLCADGGDEDVEDREDGGPTKRPRNEEFDEEDEDS GQPLVAADDVATNLKVWARTLQRPPKGNLKTYSEGLWRPDKQLCRIIKTR GNDLRSMGFPYEGDIHLYPEETLFLVERCKLEVGNLTTPELYEAVDLYHY LTYAYFRQTSLIIFRADPSCPVGVAFEAHAPSSQFKKTAQNYPIFYIMFG GTRAPVPTDEKMVAIFEWAKGVPVKYAMISDEGGVFAVNLAHSSLENHKP LATVAAAAADAGGGARAITSSVDVVCGDGEGGQRQQQGNGGVSGRHLSRN QRREEERAKHQQGQQELRQRQQLIQQQQKRNEGCAGEGPMQRQEQEKQLQ TEAEVVRRLDEEGQQAEIDVRAAPAEGEIGVILTKEGGRSSTPDDHAKQV SPTEEDDVVGRGTERVEEAITA* back to topmRNA from alignment at chr4:638136..639744+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G02220.1 ID=NO04G02220.1|Name=NO04G02220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1609bp|location=Sequence derived from alignment at chr4:638136..639744+ (Nannochloropsis oceanica) ACAGGCATTAAAAGCACGTCATGGAAGTGGACGAGTCAGTTCAGCGGCTG
TTGGCCGGGTGTGGGCGACTATGCGCCGACGGAGGGGACGAGGATGTGGA
GGACAGGGAGGATGGCGGGCCTACCAAGCGGCCTCGCAACGAAGAGTTTG
ACGAGGAGGACGAGGACAGTGGACAACCTTTGGTGGCTGCGGACGACGTG
GCAACCAACCTCAAGGTATGGGCACGGACACTGCAGCGTCCGCCCAAGGG
AAATCTCAAGGTACGTGGGTACTTTTGATGCTTTGGCTTGGCGCAGGGGG
AGGGGAGGAGGAAAGTGTGCGGAGGGGGGGGGCTTGTGGACTCCGAGGCA
ATGCAGTTTACAGACATGGAGTTATGAATTGTTAAAAATGTTGCCTCTTG
AATACCGATACCTTTCCCTTTTACTTGCCCGGTCAGCGCTCGATACAAGC
TGGTCAATGAGATATCCGACAAGCGTCTCATTCACCCTCACTTCTCCAAC
TTTTAGACTTACAGCGAAGGCCTGTGGCGCCCCGACAAGCAGCTCTGTCG
CATTATTAAGACCCGCGGAAACGATTTACGGTCCATGGGCTTCCCCTATG
AGGGCGACATACACCTCTACCCGGAGGAAACCCTCTTCCTCGTCGAACGC
TGCAAGTTGGAAGTAGGAAACCTAACCACCCCCGAACTCTACGAAGCCGT
GGATTTGTACCATTATCTGACATATGCTTACTTCCGTCAGACCAGCTTAA
TTATCTTTCGCGCGGATCCCTCCTGTCCTGTAGGAGTGGCCTTTGAGGCC
CACGCGCCCTCGTCTCAATTTAAGAAAACCGCGCAGAATTATCCTATCTT
TTACATCATGTTCGGAGGCACCCGTGCCCCAGTCCCGACCGACGAAAAGA
TGGTAGCAATCTTTGAATGGGCCAAGGGTGTGCCTGTTAAGTACGCCATG
ATCTCAGATGAAGGAGGGGTTTTTGCTGTAAATCTAGCGCATAGCTCCTT
GGAGAACCACAAGCCCCTGGCAACAGTGGCAGCGGCTGCAGCCGACGCGG
GGGGCGGGGCGAGGGCTATTACTTCATCTGTTGATGTGGTATGTGGAGAT
GGAGAAGGGGGGCAGCGGCAGCAGCAGGGGAATGGAGGCGTGAGTGGTCG
TCATCTGTCTAGGAACCAGCGTCGAGAGGAGGAGCGGGCAAAACATCAAC
AAGGGCAGCAGGAGTTGCGGCAACGGCAGCAGCTCATACAGCAGCAGCAG
AAAAGAAATGAAGGGTGTGCAGGGGAGGGACCGATGCAGCGACAGGAACA
GGAAAAGCAATTGCAGACAGAGGCGGAAGTAGTGAGGAGGTTGGACGAGG
AAGGGCAGCAGGCAGAAATTGATGTGCGAGCAGCACCGGCAGAAGGCGAA
ATAGGAGTGATATTAACAAAGGAAGGTGGTAGGAGTTCCACGCCGGATGA
CCATGCAAAGCAGGTGTCGCCAACGGAAGAGGATGATGTTGTAGGAAGAG
GAACAGAAAGAGTGGAGGAGGCAATCACGGCGTAGGACCGTGGAAGTAAA
AAAGCAGCTCATCAATATTTTTAAAACAGCCCTATACCAAAACAACATAA
CACCCCATA back to topCoding sequence (CDS) from alignment at chr4:638136..639744+ >NO04G02220.1 ID=NO04G02220.1|Name=NO04G02220.1|organism=Nannochloropsis oceanica|type=CDS|length=1269bp|location=Sequence derived from alignment at chr4:638136..639744+ (Nannochloropsis oceanica) ATGGAAGTGGACGAGTCAGTTCAGCGGCTGTTGGCCGGGTGTGGGCGACT ATGCGCCGACGGAGGGGACGAGGATGTGGAGGACAGGGAGGATGGCGGGC CTACCAAGCGGCCTCGCAACGAAGAGTTTGACGAGGAGGACGAGGACAGT GGACAACCTTTGGTGGCTGCGGACGACGTGGCAACCAACCTCAAGGTATG GGCACGGACACTGCAGCGTCCGCCCAAGGGAAATCTCAAGACTTACAGCG AAGGCCTGTGGCGCCCCGACAAGCAGCTCTGTCGCATTATTAAGACCCGC GGAAACGATTTACGGTCCATGGGCTTCCCCTATGAGGGCGACATACACCT CTACCCGGAGGAAACCCTCTTCCTCGTCGAACGCTGCAAGTTGGAAGTAG GAAACCTAACCACCCCCGAACTCTACGAAGCCGTGGATTTGTACCATTAT CTGACATATGCTTACTTCCGTCAGACCAGCTTAATTATCTTTCGCGCGGA TCCCTCCTGTCCTGTAGGAGTGGCCTTTGAGGCCCACGCGCCCTCGTCTC AATTTAAGAAAACCGCGCAGAATTATCCTATCTTTTACATCATGTTCGGA GGCACCCGTGCCCCAGTCCCGACCGACGAAAAGATGGTAGCAATCTTTGA ATGGGCCAAGGGTGTGCCTGTTAAGTACGCCATGATCTCAGATGAAGGAG GGGTTTTTGCTGTAAATCTAGCGCATAGCTCCTTGGAGAACCACAAGCCC CTGGCAACAGTGGCAGCGGCTGCAGCCGACGCGGGGGGCGGGGCGAGGGC TATTACTTCATCTGTTGATGTGGTATGTGGAGATGGAGAAGGGGGGCAGC GGCAGCAGCAGGGGAATGGAGGCGTGAGTGGTCGTCATCTGTCTAGGAAC CAGCGTCGAGAGGAGGAGCGGGCAAAACATCAACAAGGGCAGCAGGAGTT GCGGCAACGGCAGCAGCTCATACAGCAGCAGCAGAAAAGAAATGAAGGGT GTGCAGGGGAGGGACCGATGCAGCGACAGGAACAGGAAAAGCAATTGCAG ACAGAGGCGGAAGTAGTGAGGAGGTTGGACGAGGAAGGGCAGCAGGCAGA AATTGATGTGCGAGCAGCACCGGCAGAAGGCGAAATAGGAGTGATATTAA CAAAGGAAGGTGGTAGGAGTTCCACGCCGGATGACCATGCAAAGCAGGTG TCGCCAACGGAAGAGGATGATGTTGTAGGAAGAGGAACAGAAAGAGTGGA GGAGGCAATCACGGCGTAG back to top
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