NO04G01410.1, NO04G01410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01410.1
Unique NameNO04G01410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1881
Alignment locationchr4:441243..443639 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:441243..443639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO04G01410.1 vs.
Match: EWM28584.1 (hypothetical protein Naga_100009g23 [Nannochloropsis gaditana])

HSP 1 Score: 708.8 bits (1828), Expect = 1.500e-200
Identity = 386/575 (67.13%), Postives = 443/575 (77.04%), Query Frame = 0 
Query:   49 LASSPIFLAPLAFLFVLVCSLISPTKCAELVPDRWHEFEVPVVPEDKDYTQIKLNRIRDGHVAVNKHTDPSVTAELLVGDMLEAKGYTPEEIYAMQGVVSVLVKAGVLTVHADRLETADLSVLTKTTSTTGTPKRRKLQNMDGCCPCHVEAGHHPHPTIPPH----------YNKNQGGGNAAAPPSTTTTTTTAPADADARACERTLAGCAMKEVQLAADRRSMYKTMKAYGLALRRTAAARSYYLYVKEEVHSFNEFEALSKAEQEATREELAAHLLLTCKAYGLNGEELQRYGKKLGFEVPDLTKTSDAELTRLATEMASTHMMESVAKAMGKDLGFEALKVLKDSMGDAALRRIGVEPSPALRVAFGEFASEASRFITLSRQAMEAQNMLDPEIDEAYTNATAMADRLAVMMEKVNVTDLLVTATGLMISAEPYLTSAIDNPVDEQVRHKTIQPWEIILKLSQVEKAAQQQRKSFAFGLKEGNALDGLVMLHNGNGARVESPLMQQLDFDMIEDITADHMLDASELRYLVQRVGALNEIYTVDDFADLMAEVEENYREVKGLPPVYGQEES 614
            L++SP  L  L FL  +     S    AE+VPD+W EFEVPVVPEDKDYTQIKLNR+RD +VAVN+ TDP++TAELLVGDMLE+KGYTPEEIYA+QGVV+VLV AGVLTVHA++LE ADLS LT  TSTTGTPKRR LQ+  GCCPC  +   H +P    H          +N    G   A+PP+        P   D RACERTL GC  K VQLAADRRSMYK+MKA G ALRRTAAARSYYL+VK+EVHSF +FEALSK+EQEATR+ELA  LLLTCK YGL G ELQ Y + LG EVPDLTKTSDAEL  L  EMA+ H++E+VAK+MGKDLG E L   +D+ GDAALRRIGVEPSP +  AFG+FA+EASRFITLSRQAMEAQ +L+P   EAY NATA+ADRLA   E VNVTD+LVTATGLM+ AEPYLT++IDNPVD+  R K  +PW+IILKLSQ EKAAQQQRKSF   LKE N LDG+++LH  +G  VESPLMQQLDF  I +IT DHMLDASELR+LVQRVGALNEIY VDDFA+LMAEVE+NYR V GLPPV  +  S
Sbjct:    3 LSASPALLVGLLFLLAVTWKG-SAAGAAEVVPDQWREFEVPVVPEDKDYTQIKLNRLRDEYVAVNRQTDPAITAELLVGDMLESKGYTPEEIYAVQGVVAVLVNAGVLTVHAEKLEAADLSELTTATSTTGTPKRR-LQSNVGCCPCSPD--RHTNPPNLVHTKDEEIKHVAFNLTDDG---ASPPAHPMNAAPTPDRTDPRACERTLLGCEKKSVQLAADRRSMYKSMKAMGQALRRTAAARSYYLFVKDEVHSFEDFEALSKSEQEATRQELATQLLLTCKEYGLQGVELQEYARALGMEVPDLTKTSDAELENLGREMAAQHLLENVAKSMGKDLGKEGLVRFRDTFGDAALRRIGVEPSPEVYTAFGDFATEASRFITLSRQAMEAQGILEPGATEAYKNATAIADRLASTFEGVNVTDVLVTATGLMMDAEPYLTNSIDNPVDDATRQKMKEPWQIILKLSQFEKAAQQQRKSFTMSLKEDNVLDGILLLHEASGTSVESPLMQQLDFGRIAEITEDHMLDASELRFLVQRVGALNEIYDVDDFAELMAEVEDNYRMVHGLPPVREERPS 570
The following BLAST results are available for this feature:
BLAST of NO04G01410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28584.11.500e-20067.13hypothetical protein Naga_100009g23 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01410NO04G01410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01410.1NO04G01410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01410.1.cds1NO04G01410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01410.1.cds2NO04G01410.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01410.1.cds3NO04G01410.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01410.1 ID=NO04G01410.1|Name=NO04G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1881bp
ATGCACGCCACTGCCCTCCCTGCGCTCTCTCCAAAACAGAACAATCGGAC
TCTCCAGACCTTGACTCAATATTCACAGGTATTCCACGCTGCACCCATTC
CCAAAAAGCAGGGGAAAGGTCTATTGACGTTGAGCATGGCCGTTTTGGCG
TCATCCCCCATCTTTTTGGCCCCGCTGGCATTTCTCTTCGTCTTAGTTTG
CAGCCTGATTTCCCCGACGAAATGCGCGGAGCTCGTGCCCGACCGATGGC
ATGAGTTTGAGGTGCCCGTTGTGCCCGAGGACAAGGATTACACTCAAATC
AAGCTCAACCGTATAAGGGACGGCCACGTCGCCGTTAATAAGCATACCGA
CCCCTCCGTCACGGCCGAGCTCTTGGTAGGGGACATGCTTGAAGCCAAAG
GATACACTCCCGAGGAGATCTACGCCATGCAAGGCGTGGTCTCTGTCCTC
GTCAAAGCCGGTGTTCTGACTGTGCATGCCGACAGGCTTGAGACCGCGGA
CCTCTCCGTCTTGACGAAAACTACCAGCACAACAGGCACTCCCAAACGCC
GCAAGCTCCAAAACATGGATGGTTGTTGTCCGTGCCACGTGGAGGCCGGT
CACCACCCCCATCCTACCATCCCGCCCCACTACAACAAGAACCAAGGAGG
AGGTAATGCTGCCGCTCCTCCTAGCACCACCACAACCACTACTACTGCTC
CAGCCGATGCAGATGCCCGGGCCTGCGAACGTACGTTGGCCGGTTGCGCT
ATGAAAGAGGTTCAACTCGCAGCCGATCGCCGATCGATGTACAAGACGAT
GAAAGCGTACGGGTTAGCCTTACGTCGGACAGCGGCAGCCCGTTCGTATT
ATCTGTATGTGAAAGAAGAAGTTCACAGTTTCAATGAATTTGAAGCGCTG
AGCAAAGCAGAGCAAGAAGCGACGCGGGAGGAGCTAGCGGCCCACCTTCT
TTTGACCTGCAAAGCATACGGGCTCAATGGAGAAGAGCTCCAAAGGTATG
GGAAAAAGCTTGGGTTTGAAGTCCCTGACTTAACCAAGACCTCCGACGCA
GAACTTACAAGGCTTGCGACGGAGATGGCGTCTACACACATGATGGAGAG
TGTGGCGAAAGCGATGGGCAAAGATCTGGGGTTTGAAGCTTTGAAGGTCC
TGAAGGACTCTATGGGAGATGCGGCCTTGAGGAGAATTGGGGTGGAGCCC
TCACCGGCGTTACGCGTCGCGTTCGGGGAGTTTGCTAGTGAAGCTTCTCG
ATTCATAACCTTGTCGAGACAAGCGATGGAGGCACAGAACATGTTGGATC
CTGAGATAGACGAAGCCTACACAAACGCCACGGCAATGGCGGATCGTCTG
GCTGTGATGATGGAAAAGGTAAATGTGACCGATTTACTCGTCACGGCGAC
AGGCTTGATGATTTCGGCCGAGCCTTACCTGACAAGTGCAATCGACAATC
CGGTGGATGAGCAGGTGAGGCATAAGACCATCCAACCCTGGGAGATTATT
TTAAAATTGAGTCAAGTGGAAAAGGCGGCGCAGCAGCAACGCAAGAGTTT
CGCATTTGGTCTTAAGGAGGGCAATGCGCTGGATGGGCTCGTTATGTTGC
ATAACGGAAACGGGGCCAGGGTGGAGAGCCCCTTGATGCAGCAGCTGGAT
TTTGACATGATTGAGGACATCACTGCAGATCACATGCTAGATGCATCCGA
GCTGCGTTACCTCGTTCAGCGGGTAGGAGCCCTAAACGAAATCTATACCG
TTGACGACTTCGCGGATTTGATGGCCGAGGTGGAGGAGAATTACAGGGAG
GTCAAGGGCTTGCCACCTGTGTATGGACAAGAAGAGAGTTTCAAAGTGGG
GCAGGCCACAGTGACGAAGGCCAGGGTGTAA
back to top

protein sequence of NO04G01410.1

>NO04G01410.1-protein ID=NO04G01410.1-protein|Name=NO04G01410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=627bp
MHATALPALSPKQNNRTLQTLTQYSQVFHAAPIPKKQGKGLLTLSMAVLA
SSPIFLAPLAFLFVLVCSLISPTKCAELVPDRWHEFEVPVVPEDKDYTQI
KLNRIRDGHVAVNKHTDPSVTAELLVGDMLEAKGYTPEEIYAMQGVVSVL
VKAGVLTVHADRLETADLSVLTKTTSTTGTPKRRKLQNMDGCCPCHVEAG
HHPHPTIPPHYNKNQGGGNAAAPPSTTTTTTTAPADADARACERTLAGCA
MKEVQLAADRRSMYKTMKAYGLALRRTAAARSYYLYVKEEVHSFNEFEAL
SKAEQEATREELAAHLLLTCKAYGLNGEELQRYGKKLGFEVPDLTKTSDA
ELTRLATEMASTHMMESVAKAMGKDLGFEALKVLKDSMGDAALRRIGVEP
SPALRVAFGEFASEASRFITLSRQAMEAQNMLDPEIDEAYTNATAMADRL
AVMMEKVNVTDLLVTATGLMISAEPYLTSAIDNPVDEQVRHKTIQPWEII
LKLSQVEKAAQQQRKSFAFGLKEGNALDGLVMLHNGNGARVESPLMQQLD
FDMIEDITADHMLDASELRYLVQRVGALNEIYTVDDFADLMAEVEENYRE
VKGLPPVYGQEESFKVGQATVTKARV*
back to top

mRNA from alignment at chr4:441243..443639+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01410.1 ID=NO04G01410.1|Name=NO04G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2397bp|location=Sequence derived from alignment at chr4:441243..443639+ (Nannochloropsis oceanica)
ATGCACGCCACTGCCCTCCCTGCGCTCTCTCCAAAACAGAACAATCGGAC
TCTCCAGACCTTGACTCAATATTCACAGGTATTCCACGCTGCACCCATTC
CCAAAAAGCAGGGGAAAGGTCTATTGACGTTGAGCATGGCCGTTTTGGCG
TCATCCCCCATCTTTTTGGCCCCGCTGGCATTTCTCTTCGTCTTAGTTTG
CAGCCTGATTTCCCCGACGAAATGCGCGGAGCTCGTGCCCGACCGATGGC
ATGAGTTTGAGGTGCCCGTTGTGCCCGAGGACAAGGTAATGTTCAAAATA
CAAAAAAGGATTAAGCAGAGTGACAAGATGGGGAGCGTGAGGCAAGGGTG
GAGATTTGAGTGGCCTAGGAAGAATATGATTGAGCATGTGGTCCAATGGG
CCGGCAAAAGAGAGTGCGCATGGTGACGGCCCTCTGCTACTCATATCCTC
CTCTTTGCAGTTTTTTTCGAACTTCTTTCTTCGTACTATCTACATACCAA
TCAATTACCTCCTCCCCTACCGCATCTCTTATCCCCTAACAATTTCGAAG
GATTACACTCAAATCAAGCTCAACCGTATAAGGGACGGCCACGTCGCCGT
TAATAAGCATACCGACCCCTCCGTCACGGCCGAGCTCTTGGTAGGGGACA
TGCTTGAAGCCAAAGGATACACTCCCGAGGAGATCTACGCCATGCAAGGC
GTGGTCTCTGTCCTCGTCAAAGCCGGTGTTCTGACTGTGCATGCCGACAG
GCTTGAGACCGCGGACCTCTCCGTCTTGACGAAAACTACCAGCACAACAG
GCACTCCCAAACGCCGCAAGCTCCAAAACATGGATGGTTGTTGTCCGTGC
CACGTGGAGGCCGGTCACCACCCCCATCCTACCATCCCGCCCCACTACAA
CAAGAACCAAGGAGGAGGTAATGCTGCCGCTCCTCCTAGCACCACCACAA
CCACTACTACTGCTCCAGCCGATGCAGATGCCCGGGCCTGCGAACGTACG
TTGGCCGGTTGCGCTATGAAAGAGGTTCAACTCGCAGCCGATCGCCGATC
GATGTACAAGACGATGAAAGCGTACGGGTTAGCCTTACGTCGGACAGCGG
CAGCCCGTTCGTATTATCTGTATGTGAAAGAAGAAGTTCACAGTTTCAAT
GAATTTGAAGCGCTGAGCAAAGCAGAGCAAGAAGCGACGCGGGAGGAGCT
AGCGGCCCACCTTCTTTTGACCTGCAAAGCATACGGGCTCAATGGAGAAG
AGCTCCAAAGGTATGGGAAAAAGCTTGGGTTTGAAGTCCCTGACTTAACC
AAGACCTCCGACGCAGAACTTACAAGGCTTGCGACGGAGATGGCGTCTAC
ACACATGATGGAGAGTGTGGCGAAAGCGATGGGCAAAGATCTGGGGTTTG
AAGCTTTGAAGGTCCTGAAGGACTCTATGGGAGATGCGGCCTTGAGGAGA
ATTGGGGTGGAGCCCTCACCGGCGTTACGCGTCGCGTTCGGGGAGTTTGC
TAGTGAAGCTTCTCGATTCATAACCTTGTCGAGACAAGCGATGGAGGCAC
AGAACATGTTGGATCCTGAGATAGACGAAGCCTACACAAACGCCACGGCA
ATGGCGGATCGTCTGGCTGTGATGATGGAAAAGGTAAATGTGACCGATTT
ACTCGTCACGGCGACAGGCTTGATGATTTCGGCCGAGCCTTACCTGACAA
GTGCAATCGACAATCCGGTGGATGAGCAGGTGAGGCATAAGACCATCCAA
CCCTGGGAGATTATTTTAAAATTGAGTCAAGTGGAAAAGGCGGCGCAGCA
GCAACGCAAGAGTTTCGCATTTGGTCTTAAGGAGGGCAATGCGCTGGATG
GGCTCGTTATGTTGCATAACGGAAACGGGGCCAGGGTGGAGAGCCCCTTG
ATGCAGCAGCTGGATTTTGACATGATTGAGGACATCACTGCAGGTGAGTG
GTACCGGGGGTAAAAGAAGAGGGAGGGGCTGGTCGGAGGGAAGGGGAAGG
AAAAGTGTGGGGGGGTGGGGGGGAACGATGGGTGGTTGATTTTGGACTGG
GTGTATTGGATAGGACATACTCCGGGTTCATTATATCTCATGCTTGTACA
TCATCTTTACAATTTGGAACGTCTATGTCTCATGTCGTGGTGAGCTTTTG
AACGTCTCTGTCACTAACAGTCCATCTCTTCACCTTAAAAATAGATCACA
TGCTAGATGCATCCGAGCTGCGTTACCTCGTTCAGCGGGTAGGAGCCCTA
AACGAAATCTATACCGTTGACGACTTCGCGGATTTGATGGCCGAGGTGGA
GGAGAATTACAGGGAGGTCAAGGGCTTGCCACCTGTGTATGGACAAGAAG
AGAGTTTCAAAGTGGGGCAGGCCACAGTGACGAAGGCCAGGGTGTAA
back to top

Coding sequence (CDS) from alignment at chr4:441243..443639+

>NO04G01410.1 ID=NO04G01410.1|Name=NO04G01410.1|organism=Nannochloropsis oceanica|type=CDS|length=1881bp|location=Sequence derived from alignment at chr4:441243..443639+ (Nannochloropsis oceanica)
ATGCACGCCACTGCCCTCCCTGCGCTCTCTCCAAAACAGAACAATCGGAC
TCTCCAGACCTTGACTCAATATTCACAGGTATTCCACGCTGCACCCATTC
CCAAAAAGCAGGGGAAAGGTCTATTGACGTTGAGCATGGCCGTTTTGGCG
TCATCCCCCATCTTTTTGGCCCCGCTGGCATTTCTCTTCGTCTTAGTTTG
CAGCCTGATTTCCCCGACGAAATGCGCGGAGCTCGTGCCCGACCGATGGC
ATGAGTTTGAGGTGCCCGTTGTGCCCGAGGACAAGGATTACACTCAAATC
AAGCTCAACCGTATAAGGGACGGCCACGTCGCCGTTAATAAGCATACCGA
CCCCTCCGTCACGGCCGAGCTCTTGGTAGGGGACATGCTTGAAGCCAAAG
GATACACTCCCGAGGAGATCTACGCCATGCAAGGCGTGGTCTCTGTCCTC
GTCAAAGCCGGTGTTCTGACTGTGCATGCCGACAGGCTTGAGACCGCGGA
CCTCTCCGTCTTGACGAAAACTACCAGCACAACAGGCACTCCCAAACGCC
GCAAGCTCCAAAACATGGATGGTTGTTGTCCGTGCCACGTGGAGGCCGGT
CACCACCCCCATCCTACCATCCCGCCCCACTACAACAAGAACCAAGGAGG
AGGTAATGCTGCCGCTCCTCCTAGCACCACCACAACCACTACTACTGCTC
CAGCCGATGCAGATGCCCGGGCCTGCGAACGTACGTTGGCCGGTTGCGCT
ATGAAAGAGGTTCAACTCGCAGCCGATCGCCGATCGATGTACAAGACGAT
GAAAGCGTACGGGTTAGCCTTACGTCGGACAGCGGCAGCCCGTTCGTATT
ATCTGTATGTGAAAGAAGAAGTTCACAGTTTCAATGAATTTGAAGCGCTG
AGCAAAGCAGAGCAAGAAGCGACGCGGGAGGAGCTAGCGGCCCACCTTCT
TTTGACCTGCAAAGCATACGGGCTCAATGGAGAAGAGCTCCAAAGGTATG
GGAAAAAGCTTGGGTTTGAAGTCCCTGACTTAACCAAGACCTCCGACGCA
GAACTTACAAGGCTTGCGACGGAGATGGCGTCTACACACATGATGGAGAG
TGTGGCGAAAGCGATGGGCAAAGATCTGGGGTTTGAAGCTTTGAAGGTCC
TGAAGGACTCTATGGGAGATGCGGCCTTGAGGAGAATTGGGGTGGAGCCC
TCACCGGCGTTACGCGTCGCGTTCGGGGAGTTTGCTAGTGAAGCTTCTCG
ATTCATAACCTTGTCGAGACAAGCGATGGAGGCACAGAACATGTTGGATC
CTGAGATAGACGAAGCCTACACAAACGCCACGGCAATGGCGGATCGTCTG
GCTGTGATGATGGAAAAGGTAAATGTGACCGATTTACTCGTCACGGCGAC
AGGCTTGATGATTTCGGCCGAGCCTTACCTGACAAGTGCAATCGACAATC
CGGTGGATGAGCAGGTGAGGCATAAGACCATCCAACCCTGGGAGATTATT
TTAAAATTGAGTCAAGTGGAAAAGGCGGCGCAGCAGCAACGCAAGAGTTT
CGCATTTGGTCTTAAGGAGGGCAATGCGCTGGATGGGCTCGTTATGTTGC
ATAACGGAAACGGGGCCAGGGTGGAGAGCCCCTTGATGCAGCAGCTGGAT
TTTGACATGATTGAGGACATCACTGCAGATCACATGCTAGATGCATCCGA
GCTGCGTTACCTCGTTCAGCGGGTAGGAGCCCTAAACGAAATCTATACCG
TTGACGACTTCGCGGATTTGATGGCCGAGGTGGAGGAGAATTACAGGGAG
GTCAAGGGCTTGCCACCTGTGTATGGACAAGAAGAGAGTTTCAAAGTGGG
GCAGGCCACAGTGACGAAGGCCAGGGTGTAA
back to top
Synonyms
Publications