NO04G00510.1, NO04G00510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00510.1
Unique NameNO04G00510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1416
Alignment locationchr4:189956..191371 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:189956..191371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00510.1 vs.
Match: EWM28489.1 (MAGE protein [Nannochloropsis gaditana])

HSP 1 Score: 298.5 bits (763), Expect = 3.300e-77
Identity = 191/326 (58.59%), Postives = 227/326 (69.63%), Query Frame = 0 
Query:    4 RKPAASKRRASRAVKEEEEEEAEKEMPTQQASIAAPKSEAPSDEAEDGEVGEEEEEEKETQAPRSKRGRSSARAS--TTYDDDDEEDEEEEDEEEEDEEGEEEGHGAPRRRRKASFARKKSYTAKASQHAVYFCQKQVDTTFSFSQADDGPVVNQRETQASQDEMRPIDEKSFQGLSHDQQKQAVSEAMRYILFKAARREPVHRVKLHDEVVKKYGKSLVRPVLKAAAEQLESTFGYTLVAPPAYRFPRALDQDTFYLITKFRSPSLSQSINAYGKDVGYRGFCMLVMSLVYCSSSKITERALFKQLMEAQDGLKMHAKVGGGGGG 328
            R P   KRR     ++EEE E E        +  AP +E   DEA+      E+E EKE  +   K  R+S RAS  TT   +D+  E+E+ EEEED+         P+ R  +S  RK+    KASQ   Y+CQ  V+T FSF+Q +DGPV+NQRE QASQ EMRP DEK FQGLS DQQK  VSEA+RYI FKAARREPVHR KLHDEVVKKYGK+LVRPVLKAAAEQLES FGYTLV PPAYRFPR  DQ+++YLIT  RS SLS+++NAYGKDV YRGFCMLVM LV+C+ +KI E+ LFKQL EAQDGL++ +K   GGGG
Sbjct:   81 RMPKGRKRRVPDVAEDEEEAETE--------TCRAPGNEDREDEAD---ADREKEHEKENTSLVGKSIRASTRASRMTTAVVEDDASEDEKLEEEEDKTSRRGKGARPQSRHLSS--RKRQPPMKASQDGNYYCQTPVETLFSFTQTEDGPVINQREAQASQCEMRPQDEKQFQGLSQDQQKVVVSEAIRYIFFKAARREPVHRQKLHDEVVKKYGKALVRPVLKAAAEQLESIFGYTLVTPPAYRFPRDADQESYYLITSIRSHSLSKAMNAYGKDVAYRGFCMLVMGLVFCAQNKIPEQVLFKQLQEAQDGLELVSKSQAGGGG 393
The following BLAST results are available for this feature:
BLAST of NO04G00510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28489.13.300e-7758.59MAGE protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00510NO04G00510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00510.1NO04G00510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00510.1.cds1NO04G00510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00510.1 ID=NO04G00510.1|Name=NO04G00510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1416bp
AAACACAGGCATTAAGACTCGTACCGCACCAAGATGCCCGCACGCAAGCC
CGCTGCTTCCAAGCGTCGTGCGTCCCGTGCGGTCAAGGAGGAAGAGGAGG
AGGAGGCAGAGAAGGAGATGCCGACTCAACAAGCCTCAATAGCAGCCCCC
AAAAGCGAAGCGCCTTCCGATGAAGCGGAGGATGGAGAAGTGGGGGAGGA
AGAAGAGGAGGAAAAGGAAACTCAAGCTCCCCGTAGCAAACGTGGGCGGT
CCTCTGCGAGAGCCTCGACCACGTATGATGATGACGACGAGGAAGACGAG
GAGGAGGAAGACGAGGAGGAGGAAGACGAGGAGGGAGAGGAGGAGGGGCA
CGGCGCCCCACGGCGCCGGCGCAAGGCATCTTTTGCCCGTAAGAAGAGCT
ACACAGCGAAGGCTTCCCAGCACGCAGTTTATTTTTGCCAGAAGCAGGTG
GACACGACATTTTCCTTTTCCCAGGCTGATGACGGCCCGGTGGTGAACCA
ACGCGAGACCCAGGCGAGCCAGGACGAAATGCGCCCGATAGACGAGAAGA
GCTTCCAAGGCCTGAGCCATGATCAGCAGAAGCAGGCAGTGTCAGAGGCG
ATGCGCTACATTCTCTTCAAGGCGGCGCGGCGGGAGCCAGTGCATCGGGT
GAAGCTCCACGACGAGGTGGTGAAGAAGTATGGCAAGTCCCTCGTGCGAC
CCGTGCTCAAGGCCGCCGCCGAGCAGCTCGAGTCCACCTTTGGCTATACC
CTCGTTGCTCCTCCTGCCTATCGCTTTCCGCGGGCTTTGGACCAGGACAC
ATTCTACCTCATCACGAAATTCCGGTCGCCTTCGTTGAGTCAATCGATAA
ACGCGTACGGGAAGGACGTGGGGTATCGGGGTTTCTGCATGCTGGTCATG
AGCTTGGTCTATTGCTCTTCGTCCAAGATAACCGAGCGGGCCTTGTTCAA
GCAGTTGATGGAAGCACAGGACGGGTTGAAGATGCATGCGAAGGTCGGGG
GGGGAGGAGGAGGAGGATTATGGGAGGGGGAAGGACAGGAGATGATTCTT
GCAGGGGAGCTGGAGGGAGTGGGCGATGTCGGGGTTGCGCTGGAAAGGAT
GAAAAAGGAGCAGTACCTGATCCGGGAGAGAGAGCAGCAGGAGGTGGGGA
CAGGAGGGAGGGTGAGGAATGAGTTTTATTACCGGCTGGGGCAGCGGGCC
TTCGTGGAGGTGGGTCCTCGGCAAATTTTGAAATTTTTGGCGGAGGTCCA
GAATCAGGATGTTGACAAGGCGATGATGGTGGAGATTGAGACGGAGGAGA
AGAGGGAGCAGAGATAGGGATAGCGATAGGAAAAGAGGGAGGACGGGAAG
AAGGAGGGAGGAGGGAGGAGAGGAGGGAAGCAAAAATCGGAAAAAGGAAT
CAGATGGAAAAGTACA
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protein sequence of NO04G00510.1

>NO04G00510.1-protein ID=NO04G00510.1-protein|Name=NO04G00510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp
MPARKPAASKRRASRAVKEEEEEEAEKEMPTQQASIAAPKSEAPSDEAED
GEVGEEEEEEKETQAPRSKRGRSSARASTTYDDDDEEDEEEEDEEEEDEE
GEEEGHGAPRRRRKASFARKKSYTAKASQHAVYFCQKQVDTTFSFSQADD
GPVVNQRETQASQDEMRPIDEKSFQGLSHDQQKQAVSEAMRYILFKAARR
EPVHRVKLHDEVVKKYGKSLVRPVLKAAAEQLESTFGYTLVAPPAYRFPR
ALDQDTFYLITKFRSPSLSQSINAYGKDVGYRGFCMLVMSLVYCSSSKIT
ERALFKQLMEAQDGLKMHAKVGGGGGGGLWEGEGQEMILAGELEGVGDVG
VALERMKKEQYLIREREQQEVGTGGRVRNEFYYRLGQRAFVEVGPRQILK
FLAEVQNQDVDKAMMVEIETEEKREQR*
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mRNA from alignment at chr4:189956..191371+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00510.1 ID=NO04G00510.1|Name=NO04G00510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1416bp|location=Sequence derived from alignment at chr4:189956..191371+ (Nannochloropsis oceanica)
AAACACAGGCATTAAGACTCGTACCGCACCAAGATGCCCGCACGCAAGCC
CGCTGCTTCCAAGCGTCGTGCGTCCCGTGCGGTCAAGGAGGAAGAGGAGG
AGGAGGCAGAGAAGGAGATGCCGACTCAACAAGCCTCAATAGCAGCCCCC
AAAAGCGAAGCGCCTTCCGATGAAGCGGAGGATGGAGAAGTGGGGGAGGA
AGAAGAGGAGGAAAAGGAAACTCAAGCTCCCCGTAGCAAACGTGGGCGGT
CCTCTGCGAGAGCCTCGACCACGTATGATGATGACGACGAGGAAGACGAG
GAGGAGGAAGACGAGGAGGAGGAAGACGAGGAGGGAGAGGAGGAGGGGCA
CGGCGCCCCACGGCGCCGGCGCAAGGCATCTTTTGCCCGTAAGAAGAGCT
ACACAGCGAAGGCTTCCCAGCACGCAGTTTATTTTTGCCAGAAGCAGGTG
GACACGACATTTTCCTTTTCCCAGGCTGATGACGGCCCGGTGGTGAACCA
ACGCGAGACCCAGGCGAGCCAGGACGAAATGCGCCCGATAGACGAGAAGA
GCTTCCAAGGCCTGAGCCATGATCAGCAGAAGCAGGCAGTGTCAGAGGCG
ATGCGCTACATTCTCTTCAAGGCGGCGCGGCGGGAGCCAGTGCATCGGGT
GAAGCTCCACGACGAGGTGGTGAAGAAGTATGGCAAGTCCCTCGTGCGAC
CCGTGCTCAAGGCCGCCGCCGAGCAGCTCGAGTCCACCTTTGGCTATACC
CTCGTTGCTCCTCCTGCCTATCGCTTTCCGCGGGCTTTGGACCAGGACAC
ATTCTACCTCATCACGAAATTCCGGTCGCCTTCGTTGAGTCAATCGATAA
ACGCGTACGGGAAGGACGTGGGGTATCGGGGTTTCTGCATGCTGGTCATG
AGCTTGGTCTATTGCTCTTCGTCCAAGATAACCGAGCGGGCCTTGTTCAA
GCAGTTGATGGAAGCACAGGACGGGTTGAAGATGCATGCGAAGGTCGGGG
GGGGAGGAGGAGGAGGATTATGGGAGGGGGAAGGACAGGAGATGATTCTT
GCAGGGGAGCTGGAGGGAGTGGGCGATGTCGGGGTTGCGCTGGAAAGGAT
GAAAAAGGAGCAGTACCTGATCCGGGAGAGAGAGCAGCAGGAGGTGGGGA
CAGGAGGGAGGGTGAGGAATGAGTTTTATTACCGGCTGGGGCAGCGGGCC
TTCGTGGAGGTGGGTCCTCGGCAAATTTTGAAATTTTTGGCGGAGGTCCA
GAATCAGGATGTTGACAAGGCGATGATGGTGGAGATTGAGACGGAGGAGA
AGAGGGAGCAGAGATAGGGATAGCGATAGGAAAAGAGGGAGGACGGGAAG
AAGGAGGGAGGAGGGAGGAGAGGAGGGAAGCAAAAATCGGAAAAAGGAAT
CAGATGGAAAAGTACA
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Coding sequence (CDS) from alignment at chr4:189956..191371+

>NO04G00510.1 ID=NO04G00510.1|Name=NO04G00510.1|organism=Nannochloropsis oceanica|type=CDS|length=1284bp|location=Sequence derived from alignment at chr4:189956..191371+ (Nannochloropsis oceanica)
ATGCCCGCACGCAAGCCCGCTGCTTCCAAGCGTCGTGCGTCCCGTGCGGT
CAAGGAGGAAGAGGAGGAGGAGGCAGAGAAGGAGATGCCGACTCAACAAG
CCTCAATAGCAGCCCCCAAAAGCGAAGCGCCTTCCGATGAAGCGGAGGAT
GGAGAAGTGGGGGAGGAAGAAGAGGAGGAAAAGGAAACTCAAGCTCCCCG
TAGCAAACGTGGGCGGTCCTCTGCGAGAGCCTCGACCACGTATGATGATG
ACGACGAGGAAGACGAGGAGGAGGAAGACGAGGAGGAGGAAGACGAGGAG
GGAGAGGAGGAGGGGCACGGCGCCCCACGGCGCCGGCGCAAGGCATCTTT
TGCCCGTAAGAAGAGCTACACAGCGAAGGCTTCCCAGCACGCAGTTTATT
TTTGCCAGAAGCAGGTGGACACGACATTTTCCTTTTCCCAGGCTGATGAC
GGCCCGGTGGTGAACCAACGCGAGACCCAGGCGAGCCAGGACGAAATGCG
CCCGATAGACGAGAAGAGCTTCCAAGGCCTGAGCCATGATCAGCAGAAGC
AGGCAGTGTCAGAGGCGATGCGCTACATTCTCTTCAAGGCGGCGCGGCGG
GAGCCAGTGCATCGGGTGAAGCTCCACGACGAGGTGGTGAAGAAGTATGG
CAAGTCCCTCGTGCGACCCGTGCTCAAGGCCGCCGCCGAGCAGCTCGAGT
CCACCTTTGGCTATACCCTCGTTGCTCCTCCTGCCTATCGCTTTCCGCGG
GCTTTGGACCAGGACACATTCTACCTCATCACGAAATTCCGGTCGCCTTC
GTTGAGTCAATCGATAAACGCGTACGGGAAGGACGTGGGGTATCGGGGTT
TCTGCATGCTGGTCATGAGCTTGGTCTATTGCTCTTCGTCCAAGATAACC
GAGCGGGCCTTGTTCAAGCAGTTGATGGAAGCACAGGACGGGTTGAAGAT
GCATGCGAAGGTCGGGGGGGGAGGAGGAGGAGGATTATGGGAGGGGGAAG
GACAGGAGATGATTCTTGCAGGGGAGCTGGAGGGAGTGGGCGATGTCGGG
GTTGCGCTGGAAAGGATGAAAAAGGAGCAGTACCTGATCCGGGAGAGAGA
GCAGCAGGAGGTGGGGACAGGAGGGAGGGTGAGGAATGAGTTTTATTACC
GGCTGGGGCAGCGGGCCTTCGTGGAGGTGGGTCCTCGGCAAATTTTGAAA
TTTTTGGCGGAGGTCCAGAATCAGGATGTTGACAAGGCGATGATGGTGGA
GATTGAGACGGAGGAGAAGAGGGAGCAGAGATAG
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Synonyms
Publications