NO03G05110.1, NO03G05110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05110.1
Unique NameNO03G05110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1173
Alignment locationchr3:1443755..1444927 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1443755..1444927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G05110.1 vs.
Match: EWM29944.1 (4-diphosphocytidyl-2c-methyl-d-erythritol kinase [Nannochloropsis gaditana])

HSP 1 Score: 522.3 bits (1344), Expect = 1.300e-144
Identity = 273/374 (72.99%), Postives = 307/374 (82.09%), Query Frame = 0 
Query:   23 LLLPDPTTAFAPPLNGNGLGHATSPSSFAPRTAMSLPSSTRARLFVVAGTPSSSLESRRKEGNFDLELFSPAKVNLFLRIIRRREDGYHELASLFQTVAFGDTLLFKALPASATQDEFASSFTSLVTDKSNLVLRALDLFRRKTGKTRHFQVYLEKRTPVQAGLGGGSSNAATTLFAANQLLGCPASDEDLIEWSKELGSDITFFLSQGTAYCTGRGEILEPVPALSPSTHLYIVKPPIGLSTPAVFKALDLNALSKEDPRALLSAFTTRLGKGEPVPPSLYVNDLEPPAFQCIPGLKTIKESLLSKGFAAVMMSGSGTSIFAM--APPSLPA----SFDAAAFAQEMDVDVWATTFTGRPENDPRAWYPNPHA 391
            LLLP P   F P +  +G  H          TA  L SS+  R        +S+LE RR+EGNFDLELFSPAKVNLFLRIIRRREDGYHELASLFQTVAFGDTLL K LPA A QDEF+SS+TSLVTD+SNLVLRALDLFR KTGKT+ F+VYLEKRTPVQAGLGGGSSNAATTLFAANQLLG PA+DE+LIEWSKELGSDITFFLS+GTAYCTGRGE+LEPVP L  S  LY+VKPP+GLSTPAVFKALDL+AL+ EDPR LL+AFT  L +GE  P S+Y+NDLEPPAFQC+P LK IKE+LL++GF  VMMSGSGT+IFAM  AP SLP+    SFDAAAFA+EM+VD+WATTFT RP +DP+AWYPNPHA
Sbjct:   25 LLLPAPIFCFVPSIL-SGFRH----------TAADLSSSSPVRRLSTVLHATSTLEVRRREGNFDLELFSPAKVNLFLRIIRRREDGYHELASLFQTVAFGDTLLLKVLPAIAVQDEFSSSYTSLVTDQSNLVLRALDLFREKTGKTQRFEVYLEKRTPVQAGLGGGSSNAATTLFAANQLLGTPATDEELIEWSKELGSDITFFLSKGTAYCTGRGELLEPVPPLPSSIKLYVVKPPVGLSTPAVFKALDLDALNGEDPRDLLAAFTQHLSRGELGPASMYINDLEPPAFQCVPRLKAIKEALLARGFDCVMMSGSGTAIFAMAPAPSSLPSSAGLSFDAAAFAREMEVDIWATTFTNRPSDDPKAWYPNPHA 387
The following BLAST results are available for this feature:
BLAST of NO03G05110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29944.11.300e-14472.994-diphosphocytidyl-2c-methyl-d-erythritol kinase [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05110NO03G05110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05110.1NO03G05110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05110.1.cds1NO03G05110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05110.1 ID=NO03G05110.1|Name=NO03G05110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1173bp
ATGGCACAGCAGCAGCGGCGTTGGCAACTACCACCGTCGGCCTGCCTCCT
CGTCGCATGTCTCGTCCTTCTCCTCCCCGATCCTACCACTGCTTTTGCTC
CGCCGCTAAACGGGAACGGGCTTGGACATGCCACCTCCCCCTCCTCCTTT
GCGCCCAGGACCGCCATGTCCCTCCCCTCCTCCACCAGGGCACGCCTCTT
TGTTGTGGCTGGCACTCCATCCTCCTCTCTCGAGTCAAGAAGAAAAGAAG
GCAACTTTGACCTCGAACTCTTTTCGCCCGCCAAGGTCAACCTCTTTCTC
CGCATCATCCGCCGTCGTGAAGACGGCTACCACGAGCTAGCCTCCCTCTT
CCAAACCGTCGCCTTTGGGGACACTTTACTCTTCAAAGCCCTCCCCGCCT
CGGCCACGCAAGATGAATTCGCCTCTTCGTTCACATCCCTCGTCACGGAC
AAGAGTAACTTGGTCTTGCGGGCGCTCGACCTCTTTCGTCGTAAGACAGG
CAAGACTCGCCACTTCCAAGTCTACCTCGAGAAACGCACCCCCGTCCAAG
CCGGTCTCGGTGGTGGGAGCAGCAATGCCGCCACAACGTTATTCGCAGCC
AACCAACTCCTCGGCTGCCCCGCCAGTGATGAAGACCTGATCGAGTGGTC
TAAGGAGCTAGGCTCCGACATAACATTTTTCCTCTCCCAGGGCACAGCAT
ATTGCACTGGTCGCGGCGAAATACTCGAACCCGTCCCCGCCCTATCCCCC
TCCACACACCTCTATATCGTCAAGCCGCCCATCGGTCTTTCTACCCCCGC
AGTTTTCAAAGCGCTTGATTTAAATGCCCTGAGTAAAGAAGATCCTCGGG
CCCTCCTCTCCGCTTTCACCACCCGCCTCGGTAAGGGCGAGCCTGTCCCT
CCCTCTCTATATGTCAACGACCTGGAGCCTCCCGCCTTCCAGTGCATTCC
TGGCCTCAAAACAATCAAAGAGTCTCTGCTCTCGAAAGGGTTCGCCGCCG
TGATGATGTCCGGCAGTGGCACGTCCATCTTCGCCATGGCCCCTCCCTCC
CTCCCTGCCTCCTTTGATGCGGCGGCATTTGCACAAGAGATGGACGTAGA
CGTATGGGCCACCACCTTCACAGGTCGGCCCGAGAACGACCCCAGGGCGT
GGTATCCCAATCCACACGCCTAG
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protein sequence of NO03G05110.1

>NO03G05110.1-protein ID=NO03G05110.1-protein|Name=NO03G05110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp
MAQQQRRWQLPPSACLLVACLVLLLPDPTTAFAPPLNGNGLGHATSPSSF
APRTAMSLPSSTRARLFVVAGTPSSSLESRRKEGNFDLELFSPAKVNLFL
RIIRRREDGYHELASLFQTVAFGDTLLFKALPASATQDEFASSFTSLVTD
KSNLVLRALDLFRRKTGKTRHFQVYLEKRTPVQAGLGGGSSNAATTLFAA
NQLLGCPASDEDLIEWSKELGSDITFFLSQGTAYCTGRGEILEPVPALSP
STHLYIVKPPIGLSTPAVFKALDLNALSKEDPRALLSAFTTRLGKGEPVP
PSLYVNDLEPPAFQCIPGLKTIKESLLSKGFAAVMMSGSGTSIFAMAPPS
LPASFDAAAFAQEMDVDVWATTFTGRPENDPRAWYPNPHA*
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mRNA from alignment at chr3:1443755..1444927+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05110.1 ID=NO03G05110.1|Name=NO03G05110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1173bp|location=Sequence derived from alignment at chr3:1443755..1444927+ (Nannochloropsis oceanica)
ATGGCACAGCAGCAGCGGCGTTGGCAACTACCACCGTCGGCCTGCCTCCT
CGTCGCATGTCTCGTCCTTCTCCTCCCCGATCCTACCACTGCTTTTGCTC
CGCCGCTAAACGGGAACGGGCTTGGACATGCCACCTCCCCCTCCTCCTTT
GCGCCCAGGACCGCCATGTCCCTCCCCTCCTCCACCAGGGCACGCCTCTT
TGTTGTGGCTGGCACTCCATCCTCCTCTCTCGAGTCAAGAAGAAAAGAAG
GCAACTTTGACCTCGAACTCTTTTCGCCCGCCAAGGTCAACCTCTTTCTC
CGCATCATCCGCCGTCGTGAAGACGGCTACCACGAGCTAGCCTCCCTCTT
CCAAACCGTCGCCTTTGGGGACACTTTACTCTTCAAAGCCCTCCCCGCCT
CGGCCACGCAAGATGAATTCGCCTCTTCGTTCACATCCCTCGTCACGGAC
AAGAGTAACTTGGTCTTGCGGGCGCTCGACCTCTTTCGTCGTAAGACAGG
CAAGACTCGCCACTTCCAAGTCTACCTCGAGAAACGCACCCCCGTCCAAG
CCGGTCTCGGTGGTGGGAGCAGCAATGCCGCCACAACGTTATTCGCAGCC
AACCAACTCCTCGGCTGCCCCGCCAGTGATGAAGACCTGATCGAGTGGTC
TAAGGAGCTAGGCTCCGACATAACATTTTTCCTCTCCCAGGGCACAGCAT
ATTGCACTGGTCGCGGCGAAATACTCGAACCCGTCCCCGCCCTATCCCCC
TCCACACACCTCTATATCGTCAAGCCGCCCATCGGTCTTTCTACCCCCGC
AGTTTTCAAAGCGCTTGATTTAAATGCCCTGAGTAAAGAAGATCCTCGGG
CCCTCCTCTCCGCTTTCACCACCCGCCTCGGTAAGGGCGAGCCTGTCCCT
CCCTCTCTATATGTCAACGACCTGGAGCCTCCCGCCTTCCAGTGCATTCC
TGGCCTCAAAACAATCAAAGAGTCTCTGCTCTCGAAAGGGTTCGCCGCCG
TGATGATGTCCGGCAGTGGCACGTCCATCTTCGCCATGGCCCCTCCCTCC
CTCCCTGCCTCCTTTGATGCGGCGGCATTTGCACAAGAGATGGACGTAGA
CGTATGGGCCACCACCTTCACAGGTCGGCCCGAGAACGACCCCAGGGCGT
GGTATCCCAATCCACACGCCTAG
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Coding sequence (CDS) from alignment at chr3:1443755..1444927+

>NO03G05110.1 ID=NO03G05110.1|Name=NO03G05110.1|organism=Nannochloropsis oceanica|type=CDS|length=1173bp|location=Sequence derived from alignment at chr3:1443755..1444927+ (Nannochloropsis oceanica)
ATGGCACAGCAGCAGCGGCGTTGGCAACTACCACCGTCGGCCTGCCTCCT
CGTCGCATGTCTCGTCCTTCTCCTCCCCGATCCTACCACTGCTTTTGCTC
CGCCGCTAAACGGGAACGGGCTTGGACATGCCACCTCCCCCTCCTCCTTT
GCGCCCAGGACCGCCATGTCCCTCCCCTCCTCCACCAGGGCACGCCTCTT
TGTTGTGGCTGGCACTCCATCCTCCTCTCTCGAGTCAAGAAGAAAAGAAG
GCAACTTTGACCTCGAACTCTTTTCGCCCGCCAAGGTCAACCTCTTTCTC
CGCATCATCCGCCGTCGTGAAGACGGCTACCACGAGCTAGCCTCCCTCTT
CCAAACCGTCGCCTTTGGGGACACTTTACTCTTCAAAGCCCTCCCCGCCT
CGGCCACGCAAGATGAATTCGCCTCTTCGTTCACATCCCTCGTCACGGAC
AAGAGTAACTTGGTCTTGCGGGCGCTCGACCTCTTTCGTCGTAAGACAGG
CAAGACTCGCCACTTCCAAGTCTACCTCGAGAAACGCACCCCCGTCCAAG
CCGGTCTCGGTGGTGGGAGCAGCAATGCCGCCACAACGTTATTCGCAGCC
AACCAACTCCTCGGCTGCCCCGCCAGTGATGAAGACCTGATCGAGTGGTC
TAAGGAGCTAGGCTCCGACATAACATTTTTCCTCTCCCAGGGCACAGCAT
ATTGCACTGGTCGCGGCGAAATACTCGAACCCGTCCCCGCCCTATCCCCC
TCCACACACCTCTATATCGTCAAGCCGCCCATCGGTCTTTCTACCCCCGC
AGTTTTCAAAGCGCTTGATTTAAATGCCCTGAGTAAAGAAGATCCTCGGG
CCCTCCTCTCCGCTTTCACCACCCGCCTCGGTAAGGGCGAGCCTGTCCCT
CCCTCTCTATATGTCAACGACCTGGAGCCTCCCGCCTTCCAGTGCATTCC
TGGCCTCAAAACAATCAAAGAGTCTCTGCTCTCGAAAGGGTTCGCCGCCG
TGATGATGTCCGGCAGTGGCACGTCCATCTTCGCCATGGCCCCTCCCTCC
CTCCCTGCCTCCTTTGATGCGGCGGCATTTGCACAAGAGATGGACGTAGA
CGTATGGGCCACCACCTTCACAGGTCGGCCCGAGAACGACCCCAGGGCGT
GGTATCCCAATCCACACGCCTAG
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Synonyms
Publications