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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:1438169..1439451 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G05080.1 vs.
Match: XP_005853672.1 (selenoprotein t [Nannochloropsis gaditana CCMP526]; EKU22686.1 selenoprotein t [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 108.2 bits (269), Expect = 4.800e-20 Identity = 58/117 (49.57%), Postives = 75/117 (64.10%), Query Frame = 0
Query: 220 VQVAVFMLMVTGRVVFRLLGAEP-PAWFENMMNNKIQTFAIILLGNTAAASLAATGAFEITYF-----GPPVGGREGGREGG-----MVAHLVFSKLATGGMPNGHEILRRLRELGV 326
+ + +LM+ GR +FR G P PAW E +++NK+QT A++LLGNT SL+ATGAFE+TY+ P GREGGRE G + HL+FSKLA G MP G EIL L E G+
Sbjct: 1 MDLTAVLLMIAGRPLFRAAGVTPTPAWLEALLSNKLQTLAVVLLGNTLVTSLSATGAFEVTYYEPSPLPPEEEGREGGREEGEEDEAWIPHLIFSKLAMGRMPTGDEILTGLAERGL 117
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G05080.1 ID=NO03G05080.1|Name=NO03G05080.1|organism=Nannochloropsis oceanica|type=mRNA|length=981bp ATGGCCGACGCCGCCAAGGTGGAGGAGCGGGAAGGTTTCCCGGGGCAGGT GCCAGCCCCAGCCACCCAGTTGCCTCCCCACCAGCAGGAGGAGCAAGCCA CGGGCGTCAAGCCCCAAGAGCCTCTTCCCGTCAACTTTTTGCGCTGGCCC TTGGTCGTCCTCCTCTTCTCGTACATAATCCTGCTCTACGTGCGCGACGC AACGACGGCAGCAACCAGCACCAAAAAGGAAGCCTTGGGAGTTGTTCCTT CCCCCCAGTCCCCGCCCCACACCATGGGGCAAGCACCGGTGGGGATCCAT CCAGAGCGCACCGCCCCCATTTCCCAAGATGGCACTGAAAGGCTTCCTTC ACCTTCTTCTTCCTCTTCTTCTCCTTCTTTAATGTTTCCGATTGCGGGAG GAGGCAAAAACTTTCGTCAACACCCGCACATTCTGGTGCAGTATTGTTAC CGGGGGAGCTTTGTGCAGCTTTCAAAGTTCCTCCGTCACCACCTGCCGTC CCTCGTCCCCTCCTTCCCCCCATCCTCCTCCGTGTCCTCCTCCGCCTCCT CCTCCTCTTCCTCCTTTAAGAGTGACCCCGAGCAAACGTTCGTTATCCAC GGGGAGAACTACCCACCTCCCCCTTACGCTATTTTTCTGGCCACGATAAT GAGCTATGTTCAGGTAGCCGTGTTTATGCTCATGGTCACTGGTCGGGTCG TCTTCCGTCTGCTGGGTGCAGAGCCGCCAGCATGGTTTGAGAACATGATG AATAACAAGATCCAAACCTTTGCCATCATTCTCCTCGGCAACACCGCCGC TGCCTCCCTGGCTGCCACCGGTGCCTTCGAAATAACTTATTTCGGTCCTC CGGTTGGGGGGAGGGAAGGAGGGAGGGAGGGAGGGATGGTAGCTCATCTG GTGTTTTCCAAGCTGGCGACGGGAGGGATGCCGAATGGGCATGAGATTTT GAGGAGGTTGAGGGAGTTGGGGGTGGAGTAG back to topprotein sequence of NO03G05080.1 >NO03G05080.1-protein ID=NO03G05080.1-protein|Name=NO03G05080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp MADAAKVEEREGFPGQVPAPATQLPPHQQEEQATGVKPQEPLPVNFLRWP LVVLLFSYIILLYVRDATTAATSTKKEALGVVPSPQSPPHTMGQAPVGIH PERTAPISQDGTERLPSPSSSSSSPSLMFPIAGGGKNFRQHPHILVQYCY RGSFVQLSKFLRHHLPSLVPSFPPSSSVSSSASSSSSSFKSDPEQTFVIH GENYPPPPYAIFLATIMSYVQVAVFMLMVTGRVVFRLLGAEPPAWFENMM NNKIQTFAIILLGNTAAASLAATGAFEITYFGPPVGGREGGREGGMVAHL VFSKLATGGMPNGHEILRRLRELGVE* back to topmRNA from alignment at chr3:1438169..1439451- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G05080.1 ID=NO03G05080.1|Name=NO03G05080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1283bp|location=Sequence derived from alignment at chr3:1438169..1439451- (Nannochloropsis oceanica) ATGGCCGACGCCGCCAAGGTGGAGGAGCGGGAAGGTTTCCCGGGGCAGGT
GCCAGCCCCAGCCACCCAGTTGCCTCCCCACCAGCAGGAGGAGCAAGCCA
CGGGCGTCAAGCCCCAAGAGCCTCTTCCCGTCAACTTTTTGCGCTGGCCC
TTGGTCGTCCTCCTCTTCTCGTACATAATCCTGCTCTACGTGCGCGACGC
AACGACGGCAGCAACCAGCACCAAAAAGGAAGCCTTGGGAGTTGTTCCTT
CCCCCCAGTCCCCGCCCCACACCATGGGGCAAGCACCGGTGGGGATCCAT
CCAGAGCGCACCGCCCCCATTTCCCAAGATGGCACTGAAAGGCTTCCTTC
ACCTTCTTCTTCCTCTTCTTCTCCTTCTTTAATGTTTCCGATTGCGGGAG
GAGGCAAAAACTTTCGTCAACACCCGCACATTCTGGTGCAGTATTGTACA
AGCTGAGGTAATTAGAAAAAGGAGGGTGGAGAGGAGGGAGAGGGAAGAAG
CTGGAAGATACAAGATAAAATAGTTCACGCTTGCTTCTTTTCGTTCTTGT
CTCGCAACTAAAGGTGGCGACTTTATTTTTACTTTGTCCATCTATCGATT
CCTGACTGCGTGTGCACAGGTTACCGGGGGAGCTTTGTGCAGCTTTCAAA
GTTCCTCCGTCACCACCTGCCGTCCCTCGTCCCCTCCTTCCCCCCATCCT
CCTCCGTGTCCTCCTCCGCCTCCTCCTCCTCTTCCTCCTTTAAGAGTGAC
CCCGAGCAAACGTTCGTTATCCACGGGGAGAACTACCCACCTCCCCCTTA
CGCTATTTTTCTGGCCACGATAATGAGCTATGTTCAGGTAGCCGTGTTTA
TGCTCATGGTCACTGGTCGGGTCGTCTTCCGTCTGCTGGGTGCAGAGCCG
CCAGCATGGTTTGAGAACATGATGAATAACAAGGTTCGAAAGGATGCGGA
TCTGCACGACATGCATGGTGCATCAGCTTTCCCACCCTTCTTCCTTTGGA
TAGTAATCATAACCCTCCCTCCTTCCCCCCCTCCTTCCCTCTCTCCTTCC
CCCCTCCTAAGATCCAAACCTTTGCCATCATTCTCCTCGGCAACACCGCC
GCTGCCTCCCTGGCTGCCACCGGTGCCTTCGAAATAACTTATTTCGGTCC
TCCGGTTGGGGGGAGGGAAGGAGGGAGGGAGGGAGGGATGGTAGCTCATC
TGGTGTTTTCCAAGCTGGCGACGGGAGGGATGCCGAATGGGCATGAGATT
TTGAGGAGGTTGAGGGAGTTGGGGGTGGAGTAG back to topCoding sequence (CDS) from alignment at chr3:1438169..1439451- >NO03G05080.1 ID=NO03G05080.1|Name=NO03G05080.1|organism=Nannochloropsis oceanica|type=CDS|length=981bp|location=Sequence derived from alignment at chr3:1438169..1439451- (Nannochloropsis oceanica) ATGGCCGACGCCGCCAAGGTGGAGGAGCGGGAAGGTTTCCCGGGGCAGGT GCCAGCCCCAGCCACCCAGTTGCCTCCCCACCAGCAGGAGGAGCAAGCCA CGGGCGTCAAGCCCCAAGAGCCTCTTCCCGTCAACTTTTTGCGCTGGCCC TTGGTCGTCCTCCTCTTCTCGTACATAATCCTGCTCTACGTGCGCGACGC AACGACGGCAGCAACCAGCACCAAAAAGGAAGCCTTGGGAGTTGTTCCTT CCCCCCAGTCCCCGCCCCACACCATGGGGCAAGCACCGGTGGGGATCCAT CCAGAGCGCACCGCCCCCATTTCCCAAGATGGCACTGAAAGGCTTCCTTC ACCTTCTTCTTCCTCTTCTTCTCCTTCTTTAATGTTTCCGATTGCGGGAG GAGGCAAAAACTTTCGTCAACACCCGCACATTCTGGTGCAGTATTGTTAC CGGGGGAGCTTTGTGCAGCTTTCAAAGTTCCTCCGTCACCACCTGCCGTC CCTCGTCCCCTCCTTCCCCCCATCCTCCTCCGTGTCCTCCTCCGCCTCCT CCTCCTCTTCCTCCTTTAAGAGTGACCCCGAGCAAACGTTCGTTATCCAC GGGGAGAACTACCCACCTCCCCCTTACGCTATTTTTCTGGCCACGATAAT GAGCTATGTTCAGGTAGCCGTGTTTATGCTCATGGTCACTGGTCGGGTCG TCTTCCGTCTGCTGGGTGCAGAGCCGCCAGCATGGTTTGAGAACATGATG AATAACAAGATCCAAACCTTTGCCATCATTCTCCTCGGCAACACCGCCGC TGCCTCCCTGGCTGCCACCGGTGCCTTCGAAATAACTTATTTCGGTCCTC CGGTTGGGGGGAGGGAAGGAGGGAGGGAGGGAGGGATGGTAGCTCATCTG GTGTTTTCCAAGCTGGCGACGGGAGGGATGCCGAATGGGCATGAGATTTT GAGGAGGTTGAGGGAGTTGGGGGTGGAGTAG back to top
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