NO03G04060.1, NO03G04060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04060.1
Unique NameNO03G04060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length333
Alignment locationchr3:1182164..1182496 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1182164..1182496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04060.1 vs.
Match: XP_005853433.1 (ferredoxin [Nannochloropsis gaditana CCMP526]; EKU22924.1 ferredoxin [Nannochloropsis gaditana CCMP526]; EWM29870.1 conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 177.9 bits (450), Expect = 1.700e-41
Identity = 85/109 (77.98%), Postives = 95/109 (87.16%), Query Frame = 0 
Query:    2 MAFRFVQTLALVLTTSAFFLPQAPHTYGVKRGGPVFNGDVEVIFPGNKKAKAKPGEALKAVAAKAKFSPNYGCEEGKCGSCELKGSDGKKYRVCITKVPKAAGPLTLKP 111
            M  R VQ L L++ T+AFF P AP   G+KRGGPV+NGDVEVI+PGNKK KAKPGEALKAVAA+A+++PNYGCEEGKCGSCE KGSDGKKYRVCITKVPK AGPLTLKP
Sbjct:    8 MMLRIVQALTLLMATTAFFAPHAPSA-GIKRGGPVYNGDVEVIWPGNKKVKAKPGEALKAVAARARYTPNYGCEEGKCGSCEHKGSDGKKYRVCITKVPKIAGPLTLKP 115
The following BLAST results are available for this feature:
BLAST of NO03G04060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853433.11.700e-4177.98ferredoxin [Nannochloropsis gaditana CCMP526]; EKU... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04060NO03G04060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04060.1NO03G04060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04060.1.cds1NO03G04060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04060.1 ID=NO03G04060.1|Name=NO03G04060.1|organism=Nannochloropsis oceanica|type=mRNA|length=333bp
ATGATGGCCTTTCGTTTCGTCCAAACCTTGGCCTTGGTGCTGACCACTTC
TGCCTTTTTCCTCCCGCAAGCCCCCCACACATATGGCGTGAAGCGTGGCG
GCCCCGTTTTCAATGGCGACGTCGAGGTAATCTTCCCCGGAAATAAGAAG
GCCAAGGCCAAGCCAGGTGAAGCACTCAAAGCCGTGGCTGCGAAAGCGAA
ATTTAGCCCCAACTATGGCTGTGAGGAGGGAAAGTGCGGCTCATGCGAGC
TCAAAGGCAGCGATGGGAAGAAGTACCGAGTCTGCATCACCAAGGTGCCC
AAGGCTGCGGGACCCTTGACGTTGAAACCCTAA
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protein sequence of NO03G04060.1

>NO03G04060.1-protein ID=NO03G04060.1-protein|Name=NO03G04060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
MMAFRFVQTLALVLTTSAFFLPQAPHTYGVKRGGPVFNGDVEVIFPGNKK
AKAKPGEALKAVAAKAKFSPNYGCEEGKCGSCELKGSDGKKYRVCITKVP
KAAGPLTLKP*
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mRNA from alignment at chr3:1182164..1182496+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04060.1 ID=NO03G04060.1|Name=NO03G04060.1|organism=Nannochloropsis oceanica|type=mRNA|length=333bp|location=Sequence derived from alignment at chr3:1182164..1182496+ (Nannochloropsis oceanica)
ATGATGGCCTTTCGTTTCGTCCAAACCTTGGCCTTGGTGCTGACCACTTC
TGCCTTTTTCCTCCCGCAAGCCCCCCACACATATGGCGTGAAGCGTGGCG
GCCCCGTTTTCAATGGCGACGTCGAGGTAATCTTCCCCGGAAATAAGAAG
GCCAAGGCCAAGCCAGGTGAAGCACTCAAAGCCGTGGCTGCGAAAGCGAA
ATTTAGCCCCAACTATGGCTGTGAGGAGGGAAAGTGCGGCTCATGCGAGC
TCAAAGGCAGCGATGGGAAGAAGTACCGAGTCTGCATCACCAAGGTGCCC
AAGGCTGCGGGACCCTTGACGTTGAAACCCTAA
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Coding sequence (CDS) from alignment at chr3:1182164..1182496+

>NO03G04060.1 ID=NO03G04060.1|Name=NO03G04060.1|organism=Nannochloropsis oceanica|type=CDS|length=333bp|location=Sequence derived from alignment at chr3:1182164..1182496+ (Nannochloropsis oceanica)
ATGATGGCCTTTCGTTTCGTCCAAACCTTGGCCTTGGTGCTGACCACTTC
TGCCTTTTTCCTCCCGCAAGCCCCCCACACATATGGCGTGAAGCGTGGCG
GCCCCGTTTTCAATGGCGACGTCGAGGTAATCTTCCCCGGAAATAAGAAG
GCCAAGGCCAAGCCAGGTGAAGCACTCAAAGCCGTGGCTGCGAAAGCGAA
ATTTAGCCCCAACTATGGCTGTGAGGAGGGAAAGTGCGGCTCATGCGAGC
TCAAAGGCAGCGATGGGAAGAAGTACCGAGTCTGCATCACCAAGGTGCCC
AAGGCTGCGGGACCCTTGACGTTGAAACCCTAA
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Synonyms
Publications