NO03G03750.1, NO03G03750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03750.1
Unique NameNO03G03750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1169
Alignment locationchr3:1108804..1109972 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1108804..1109972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03750.1 vs.
Match: EWM29802.1 (u1 small nuclear ribonucleoprotein a [Nannochloropsis gaditana])

HSP 1 Score: 344.4 bits (882), Expect = 3.400e-91
Identity = 176/262 (67.18%), Postives = 206/262 (78.63%), Query Frame = 0 
Query:   31 MDDDTPTATVYVNNINEKVRGEKLMQGLKQVFTPIGKVKKIHARKSLKLRGQAFIIYDRVVDAQSAVTKLQGFSFYGKSLRLAFADCPSDLTLKARGEVPERRPAHPKKGMVAVKLEKVGSSGGRAVPKATPVAQPFAPEAAFGSRPPPPPMQP--GHVNGA----AAEGHMSTAALPPAL-----PHNVLFCEELPSEATEEMLATLFAQYAGFKGVRMVRARACAFVDFGSEPEATTALHGLAGFKLTEENPLKVSYARQ 282
            M  D P+ATVYVNN+NEK+RGEKLMQGL+Q+F P+GK++KIHAR+SLKLRGQAF+++DRV DAQ+A+ KLQ FSFYGK LR+A    PSD TL+A+G  P+RRPAHPKKGMVAVKLE+   SG R+VP ATPVAQPFAP A     PPPP + P   H NG     A+ G  S   +PPA+     P+NVLFCEELP+EATEEML  LF+QYAGF GVRMV AR CAF+DF SEPEAT ALHGL+GFKLTEE PLK+SYARQ
Sbjct:    1 MAADVPSATVYVNNVNEKIRGEKLMQGLRQLFNPMGKIRKIHARRSLKLRGQAFVVFDRVNDAQNAIDKLQNFSFYGKPLRMAITQEPSDQTLRAQGVEPDRRPAHPKKGMVAVKLERTKGSGSRSVPTATPVAQPFAPSATLDVPPPPPQLPPARAHTNGGADPMASTGEGSGFVIPPAVAAPAPPYNVLFCEELPAEATEEMLVALFSQYAGFMGVRMVAARGCAFLDFKSEPEATVALHGLSGFKLTEERPLKLSYARQ 262
The following BLAST results are available for this feature:
BLAST of NO03G03750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29802.13.400e-9167.18u1 small nuclear ribonucleoprotein a [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03750NO03G03750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03750.1NO03G03750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03750.1.cds1NO03G03750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03750.1 ID=NO03G03750.1|Name=NO03G03750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1169bp
CATTTTATTATAAGTTAGCGAAGAACAGCCCAACAGCCCAACAGCCCATT
TCAAACCTTGTGTGCTGCCGGCTCATTGTCCACGACAAACATCAAGAGTG
AGTCAAGAAGCGAAAGCCTTGCGCCCGCAGTCATGCCTCTCTTGCCTTTC
GGTCCTCCGTCTCGTGGTACTCTCTTCCTCCACAAAGATAATACAGGACA
CAAGGAGCAGCTTCAACATAGTTTTTACCAGCAGTTGGCGTGCTTTCCCT
GCGATGTTGCGTTGCTGTCACGCAAAGTTTCGCATCATCATCATCCCCGT
CCTCACGACCTCGCCTCTCCCAACACACCATATAGAGGCACACATGGACG
ACGACACGCCCACCGCGACGGTGTACGTCAACAATATCAACGAAAAGGTA
CGGGGTGAGAAGCTGATGCAAGGCCTGAAGCAAGTTTTCACCCCCATTGG
CAAGGTGAAAAAAATTCATGCCCGCAAGTCTCTCAAGCTCCGGGGCCAGG
CCTTCATCATCTACGATCGCGTTGTGGACGCGCAATCAGCCGTGACCAAG
CTGCAGGGCTTCTCCTTCTACGGCAAATCACTACGACTGGCATTTGCCGA
TTGCCCGTCCGACCTCACTCTCAAGGCACGAGGAGAAGTGCCTGAGCGAC
GACCGGCCCACCCAAAGAAGGGCATGGTGGCGGTCAAGCTGGAAAAGGTT
GGGAGCAGTGGCGGTCGCGCCGTACCTAAAGCTACACCAGTCGCACAGCC
TTTTGCTCCAGAAGCTGCATTTGGATCCCGGCCGCCCCCGCCACCCATGC
AACCTGGACACGTAAATGGAGCTGCTGCAGAAGGACATATGTCCACTGCT
GCCTTGCCCCCAGCCTTGCCGCACAACGTTTTATTTTGCGAAGAGTTGCC
CTCAGAGGCGACAGAGGAGATGCTTGCGACGCTATTTGCTCAATACGCTG
GATTTAAAGGGGTAAGGATGGTGAGGGCACGGGCGTGCGCCTTTGTTGAC
TTTGGGAGTGAGCCGGAAGCGACCACGGCTTTGCATGGCTTGGCCGGGTT
CAAATTGACGGAGGAGAATCCATTGAAGGTCTCGTATGCGAGACAATAAG
ATGGGTAGGAAAGAATTTGTGAAGTCATGTCATCGAGGAAAGAAAGAAAA
GACATGAAGAGAGAATGCA
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protein sequence of NO03G03750.1

>NO03G03750.1-protein ID=NO03G03750.1-protein|Name=NO03G03750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=282bp
MLRCCHAKFRIIIIPVLTTSPLPTHHIEAHMDDDTPTATVYVNNINEKVR
GEKLMQGLKQVFTPIGKVKKIHARKSLKLRGQAFIIYDRVVDAQSAVTKL
QGFSFYGKSLRLAFADCPSDLTLKARGEVPERRPAHPKKGMVAVKLEKVG
SSGGRAVPKATPVAQPFAPEAAFGSRPPPPPMQPGHVNGAAAEGHMSTAA
LPPALPHNVLFCEELPSEATEEMLATLFAQYAGFKGVRMVRARACAFVDF
GSEPEATTALHGLAGFKLTEENPLKVSYARQ*
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mRNA from alignment at chr3:1108804..1109972-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03750.1 ID=NO03G03750.1|Name=NO03G03750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1169bp|location=Sequence derived from alignment at chr3:1108804..1109972- (Nannochloropsis oceanica)
CATTTTATTATAAGTTAGCGAAGAACAGCCCAACAGCCCAACAGCCCATT
TCAAACCTTGTGTGCTGCCGGCTCATTGTCCACGACAAACATCAAGAGTG
AGTCAAGAAGCGAAAGCCTTGCGCCCGCAGTCATGCCTCTCTTGCCTTTC
GGTCCTCCGTCTCGTGGTACTCTCTTCCTCCACAAAGATAATACAGGACA
CAAGGAGCAGCTTCAACATAGTTTTTACCAGCAGTTGGCGTGCTTTCCCT
GCGATGTTGCGTTGCTGTCACGCAAAGTTTCGCATCATCATCATCCCCGT
CCTCACGACCTCGCCTCTCCCAACACACCATATAGAGGCACACATGGACG
ACGACACGCCCACCGCGACGGTGTACGTCAACAATATCAACGAAAAGGTA
CGGGGTGAGAAGCTGATGCAAGGCCTGAAGCAAGTTTTCACCCCCATTGG
CAAGGTGAAAAAAATTCATGCCCGCAAGTCTCTCAAGCTCCGGGGCCAGG
CCTTCATCATCTACGATCGCGTTGTGGACGCGCAATCAGCCGTGACCAAG
CTGCAGGGCTTCTCCTTCTACGGCAAATCACTACGACTGGCATTTGCCGA
TTGCCCGTCCGACCTCACTCTCAAGGCACGAGGAGAAGTGCCTGAGCGAC
GACCGGCCCACCCAAAGAAGGGCATGGTGGCGGTCAAGCTGGAAAAGGTT
GGGAGCAGTGGCGGTCGCGCCGTACCTAAAGCTACACCAGTCGCACAGCC
TTTTGCTCCAGAAGCTGCATTTGGATCCCGGCCGCCCCCGCCACCCATGC
AACCTGGACACGTAAATGGAGCTGCTGCAGAAGGACATATGTCCACTGCT
GCCTTGCCCCCAGCCTTGCCGCACAACGTTTTATTTTGCGAAGAGTTGCC
CTCAGAGGCGACAGAGGAGATGCTTGCGACGCTATTTGCTCAATACGCTG
GATTTAAAGGGGTAAGGATGGTGAGGGCACGGGCGTGCGCCTTTGTTGAC
TTTGGGAGTGAGCCGGAAGCGACCACGGCTTTGCATGGCTTGGCCGGGTT
CAAATTGACGGAGGAGAATCCATTGAAGGTCTCGTATGCGAGACAATAAG
ATGGGTAGGAAAGAATTTGTGAAGTCATGTCATCGAGGAAAGAAAGAAAA
GACATGAAGAGAGAATGCA
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Coding sequence (CDS) from alignment at chr3:1108804..1109972-

>NO03G03750.1 ID=NO03G03750.1|Name=NO03G03750.1|organism=Nannochloropsis oceanica|type=CDS|length=846bp|location=Sequence derived from alignment at chr3:1108804..1109972- (Nannochloropsis oceanica)
ATGTTGCGTTGCTGTCACGCAAAGTTTCGCATCATCATCATCCCCGTCCT
CACGACCTCGCCTCTCCCAACACACCATATAGAGGCACACATGGACGACG
ACACGCCCACCGCGACGGTGTACGTCAACAATATCAACGAAAAGGTACGG
GGTGAGAAGCTGATGCAAGGCCTGAAGCAAGTTTTCACCCCCATTGGCAA
GGTGAAAAAAATTCATGCCCGCAAGTCTCTCAAGCTCCGGGGCCAGGCCT
TCATCATCTACGATCGCGTTGTGGACGCGCAATCAGCCGTGACCAAGCTG
CAGGGCTTCTCCTTCTACGGCAAATCACTACGACTGGCATTTGCCGATTG
CCCGTCCGACCTCACTCTCAAGGCACGAGGAGAAGTGCCTGAGCGACGAC
CGGCCCACCCAAAGAAGGGCATGGTGGCGGTCAAGCTGGAAAAGGTTGGG
AGCAGTGGCGGTCGCGCCGTACCTAAAGCTACACCAGTCGCACAGCCTTT
TGCTCCAGAAGCTGCATTTGGATCCCGGCCGCCCCCGCCACCCATGCAAC
CTGGACACGTAAATGGAGCTGCTGCAGAAGGACATATGTCCACTGCTGCC
TTGCCCCCAGCCTTGCCGCACAACGTTTTATTTTGCGAAGAGTTGCCCTC
AGAGGCGACAGAGGAGATGCTTGCGACGCTATTTGCTCAATACGCTGGAT
TTAAAGGGGTAAGGATGGTGAGGGCACGGGCGTGCGCCTTTGTTGACTTT
GGGAGTGAGCCGGAAGCGACCACGGCTTTGCATGGCTTGGCCGGGTTCAA
ATTGACGGAGGAGAATCCATTGAAGGTCTCGTATGCGAGACAATAA
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Synonyms
Publications