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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:948243..950840 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G03190.1 vs.
Match: EWM29736.1 (riboflavin kinase [Nannochloropsis gaditana]) HSP 1 Score: 234.6 bits (597), Expect = 2.500e-58 Identity = 113/160 (70.62%), Postives = 127/160 (79.38%), Query Frame = 0
Query: 18 GDGGG-GEEVDAAKLQALDLPLLLTATVVKGFGRGSKLLGIPTANLDMEQVGAMVDYWPNGIYFGFVFLRDQIYKAVASIGTNPYFKNSQKTVEPHLLYEFPDDFYGEELKFLVCGYVRPEASFPSLDELVKAIRNDIAFARAALEEPEWKKFSSNNLGW 177
GDGG G V+ A LP LL A+VVKGFGRGSKLLGIPTANL+M+QVG +VD WPNGIY+GF L+ +YKAVASIGTNPYFKNSQKTVEPHLL+EFPDDFYGEELKFLVCGYVRPE SF SL+ELV AIR+DI AR ALE P+W+ + W
Sbjct: 78 GDGGSDGSAVNGAGGTTPQLPFLLKASVVKGFGRGSKLLGIPTANLNMDQVGPVVDSWPNGIYYGFSCLKGDVYKAVASIGTNPYFKNSQKTVEPHLLHEFPDDFYGEELKFLVCGYVRPERSFASLEELVAAIRSDIEVARTALEAPDWRMLGTREAAW 237
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G03190.1 ID=NO03G03190.1|Name=NO03G03190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2354bp CTTGATTGTCACGCGTAACATTTCGTATGTATTTCATGAATGAATGTGTG AAAAAGAATTTGTTCTTTTTGTTATATTCTTCCTCTTCCCTTGCTTTACT CTTCTACCTCTGCAATCCGTCTAGATGACTTTATTTTTGATCCTTCAATG TCTCGGCATGTGTTTCGCCTCCTTTACTATCCATCCCACCACCTCTCCCT CTTTCTCCCCAACGTCTACTCTAAACCTATATACACATATCCTCCCTCGC AATCTCCATTAAACTGCCATTCGCGTACGATTCTTCGCTCGTCGTCGCGC AAGAATTTTCCGTCCGTCCCTGTTTTTAAGACGACTCAAAAAGCCATGGG CTCGCTTACGCCTGAGCAAACTAGGTTGATATGTCCGTTTAATGAGCTGC ATGGCCTCTCCACCCGTGCTGTCCGTTGTAATCTCCTCTTCCAGCACCAT GGGGGGGGGGATGAGGCGGGTGCTATTTTTGTTTTGGGGGGAGGCGGATA TGGTGAGCTTGTGAACTCTCAGATTTATTACGTCGCAGTTTAAATCTGGG CAACGTATAGGTAACAACAAGCAAATGAGTCCGTCACAGCTCTGGGCATA ATTTAGCCCTGCCTTCTCCCATCTCCTCAGTGCCACCCCTCCAAGCCTTT TCACTTACCAATACGTGCACCATCGATCATAGGGTCCGGTTTCTCTTCTC GCGACCACACGAAGCCCAACGGCGCGGCTTGCTGCTGGATGTGAAGCTTC TCCATGGCCTCGTCAACGTTGAAGACGCGGAGGTCGAAGAAGGGCCCCGT CGTATTATTAGATTCCAGGGTGATGCTCCCGCTACTGGCTTCATCGCACG CCCTACCTGAGGGAGGGGAGGCGGGCGTGGAGGACGACGACGACGGGGAG GAAGAGGAGGAGTGTGGGAATTTGCCCGAAGATGATGAGGACGAGGATGA GGACGAGGACATGGCGGACGACTGATGTTGGCCGGAGCACGTTAAAGCAG CGGCACAAGGGAACGAGGGCGTCACATGTTGCCTGGCGGCACGGCACGCC ACACCCGCCACTAGCCGCGACGTGGAAACCAAGGCACGCCGGGCCATGCC AGCACCGAAGGGCATCATTGCGTTTATAACACTGTGTTGTGTCATGAGTG CGGGAATGTGGTGCGTGACTTGTCAAGCAATAACGAGGAAGCACCCGCAT CACGGGAGCGATGATCTCAATCATCTTTCAGTAAAAAGTTACACGGCAGA CTCGGCGGACAAACGAGATAGGACGTTATTGAGTCTTTCGAAGGCCTGGG CGAGTCCCGCTGTCGCGTCATGTCTCTCTGATGGTCTGCAAAGAGCTACG GCTTCGTAATCCAGGTGAGGCCGTGCATGGCTGGATAAAAGGGTGGGCAA CAACGCGTGGACACGCAAGACAACACCGACGCCAAAATTGTGAAGGTCGC CAATCATTGCTGATCGCCCTCTGTCGTCAGTCAGCCGTGCCCCCTCACAC ATACGCATCCAAACCCAGACCCACAGACAGCCGAGTACGTACGCGAGCCT CACTGCCACGCCTACCGCTATTATAGCAGCAAGAGCACATTGCTTTGACA TGTCCTCCGAAACGGCCCCAGCACCAATATATGGCGAAGGTGGAGGAAAA GGGGACGGAGGCGGGGGAGAGGAGGTCGACGCCGCAAAGCTTCAGGCACT CGACCTCCCGCTGCTCCTCACGGCAACTGTGGTCAAGGGCTTTGGAAGGG GAAGCAAACTGCTAGGGATCCCGACAGCTAACTTGGACATGGAACAAGTA GGAGCCATGGTAGACTACTGGCCTAACGGCATCTATTTTGGTTTCGTCTT TCTGCGAGACCAAATCTACAAAGCCGTGGCCAGCATCGGCACCAACCCCT ACTTCAAAAACAGTCAGAAGACAGTCGAACCTCACCTCCTGTATGAGTTT CCGGACGACTTTTATGGAGAGGAGCTTAAATTTCTTGTTTGTGGGTACGT GCGTCCTGAAGCTTCCTTTCCTTCGCTTGATGAGCTGGTGAAGGCCATTC GCAATGACATTGCCTTTGCAAGAGCGGCGTTGGAGGAGCCGGAGTGGAAG AAGTTTTCGAGTAATAATTTGGGATGGACTAAGAGTGTGGCATGTTGACT ACAGTTGCGGTATTTGTGGTGGTAGTGTAAGAGGAGGAAGGAGGATGAGA AAAAGGGAGGTCAGGAGGAGGACGAGGAAGACGAGGAGGAGAGGGAAAAG GAGGAGAAAGAGCAATTTTGACTGCATCGATGATGATGATTGAGATAATT AAACGAATGAGTGGCTTTTGTATATAGATGTATAAGAAAGAAATCACTTT CTTG back to topprotein sequence of NO03G03190.1 >NO03G03190.1-protein ID=NO03G03190.1-protein|Name=NO03G03190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp MSSETAPAPIYGEGGGKGDGGGGEEVDAAKLQALDLPLLLTATVVKGFGR GSKLLGIPTANLDMEQVGAMVDYWPNGIYFGFVFLRDQIYKAVASIGTNP YFKNSQKTVEPHLLYEFPDDFYGEELKFLVCGYVRPEASFPSLDELVKAI RNDIAFARAALEEPEWKKFSSNNLGWTKSVAC* back to topmRNA from alignment at chr3:948243..950840+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G03190.1 ID=NO03G03190.1|Name=NO03G03190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2598bp|location=Sequence derived from alignment at chr3:948243..950840+ (Nannochloropsis oceanica) CTTGATTGTCACGCGTAACATTTCGTATGTATTTCATGAATGAATGTGTG
AAAAAGAATTTGTTCTTTTTGTTATATTCTTCCTCTTCCCTTGCTTTACT
CTTCTACCTCTGCAATCCGTCTAGATGACTTTATTTTTGATCCTTCAATG
TCTCGGCATGTGTTTCGCCTCCTTTACTATCCATCCCACCACCTCTCCCT
CTTTCTCCCCAACGTCTACTCTAAACCTATATACACATATCCTCCCTCGC
AATCTCCATTAAACTGCCATTCGCGTACGATTCTTCGCTCGTCGTCGCGC
AAGAATTTTCCGTCCGTCCCTGTTTTTAAGACGACTCAAAAAGCCATGGG
CTCGCTTACGCCTGAGCAAACTAGGTTGATATGTCCGTTTAATGAGCTGC
ATGGCCTCTCCACCCGTGCTGTCCGTTGTAATCTCCTCTTCCAGCACCAT
GGGGGGGGGGATGAGGCGGGTGCTATTTTTGTTTTGGGGGGAGGCGGATA
TGGTGAGCTTGTGAACTCTCAGATTTATTACGTCGCAGTTTAAATCTGGG
CAACGTATAGGTAACAACAAGCAAATGAGTCCGTCACAGCTCTGGGCATA
ATTTAGCCCTGCCTTCTCCCATCTCCTCAGTGCCACCCCTCCAAGCCTTT
TCACTTACCAATACGTGCACCATCGATCATAGGGTCCGGTTTCTCTTCTC
GCGACCACACGAAGCCCAACGGCGCGGCTTGCTGCTGGATGTGAAGCTTC
TCCATGGCCTCGTCAACGTTGAAGACGCGGAGGTCGAAGAAGGGCCCCGT
CGTATTATTAGATTCCAGGGTGATGCTCCCGCTACTGGCTTCATCGCACG
CCCTACCTGAGGGAGGGGAGGCGGGCGTGGAGGACGACGACGACGGGGAG
GAAGAGGAGGAGTGTGGGAATTTGCCCGAAGATGATGAGGACGAGGATGA
GGACGAGGACATGGCGGACGACTGATGTTGGCCGGAGCACGTTAAAGCAG
CGGCACAAGGGAACGAGGGCGTCACATGTTGCCTGGCGGCACGGCACGCC
ACACCCGCCACTAGCCGCGACGTGGAAACCAAGGCACGCCGGGCCATGCC
AGCACCGAAGGGCATCATTGCGTTTATAACACTGTGTTGTGTCATGAGTG
CGGGAATGTGGTGCGTGACTTGTCAAGCAATAACGAGGAAGCACCCGCAT
CACGGGAGCGATGATCTCAATCATCTTTCAGTAAAAAGTTACACGGCAGA
CTCGGCGGACAAACGAGATAGGACGTTATTGAGTCTTTCGAAGGCCTGGG
CGAGTCCCGCTGTCGCGTCATGTCTCTCTGATGGTCTGCAAAGAGCTACG
GCTTCGTAATCCAGGTGAGGCCGTGCATGGCTGGATAAAAGGGTGGGCAA
CAACGCGTGGACACGCAAGACAACACCGACGCCAAAATTGTGAAGGTCGC
CAATCATTGCTGATCGCCCTCTGTCGTCAGTCAGCCGTGCCCCCTCACAC
ATACGCATCCAAACCCAGACCCACAGACAGCCGAGTACGTACGCGAGCCT
CACTGCCACGCCTACCGCTATTATAGCAGCAAGAGCACATTGCTTTGACA
TGTCCTCCGAAACGGCCCCAGCACCAATATATGGCGAAGGTGGAGGAAAA
GGGGACGGAGGCGGGGGAGAGGAGGTCGACGCCGCAAAGCTTCAGGCACT
CGACCTCCCGCTGCTCCTCACGGCAACTGTGGTCAAGGGCTTTGGAAGGG
GAAGCAAACTGCTAGGGATCCCGACAGGTAAATACAAATTTCCTAAAATT
CAAGGTTTCGCCTGTTTTCTGTGTGCCATCATCCTCTTTCACGCAATTTC
CCCTCCTTGTTTCGGCATTCTTCCAAACACAGCTAACTTGGACATGGAAC
AAGTAGGAGCCATGGTAGACTACTGGCCTAACGGCATCTATTTTGGTTTC
GTCTTTCTGCGAGACCAAATCTACAAAGCCGTGGCCAGCATCGGCACCAA
CCCCTACTTCAAAAACAGTCAGAAGGTACGCTCGAGGGAGTGTCAGACGT
TTGACTCGTCGGTTTCGAAGCTGTGCCTTACTTTAAGACACTACATACAT
TTATCATTAACCACATTTCTGTACCCACTTTTCTTCCTCCCTTACAACAC
ATATCCCTACACAGACAGTCGAACCTCACCTCCTGTATGAGTTTCCGGAC
GACTTTTATGGAGAGGAGCTTAAATTTCTTGTTTGTGGGTACGTGCGTCC
TGAAGCTTCCTTTCCTTCGCTTGATGAGCTGGTGAAGGCCATTCGCAATG
ACATTGCCTTTGCAAGAGCGGCGTTGGAGGAGCCGGAGTGGAAGAAGTTT
TCGAGTAATAATTTGGGATGGACTAAGAGTGTGGCATGTTGACTACAGTT
GCGGTATTTGTGGTGGTAGTGTAAGAGGAGGAAGGAGGATGAGAAAAAGG
GAGGTCAGGAGGAGGACGAGGAAGACGAGGAGGAGAGGGAAAAGGAGGAG
AAAGAGCAATTTTGACTGCATCGATGATGATGATTGAGATAATTAAACGA
ATGAGTGGCTTTTGTATATAGATGTATAAGAAAGAAATCACTTTCTTG back to topCoding sequence (CDS) from alignment at chr3:948243..950840+ >NO03G03190.1 ID=NO03G03190.1|Name=NO03G03190.1|organism=Nannochloropsis oceanica|type=CDS|length=549bp|location=Sequence derived from alignment at chr3:948243..950840+ (Nannochloropsis oceanica) ATGTCCTCCGAAACGGCCCCAGCACCAATATATGGCGAAGGTGGAGGAAA AGGGGACGGAGGCGGGGGAGAGGAGGTCGACGCCGCAAAGCTTCAGGCAC TCGACCTCCCGCTGCTCCTCACGGCAACTGTGGTCAAGGGCTTTGGAAGG GGAAGCAAACTGCTAGGGATCCCGACAGCTAACTTGGACATGGAACAAGT AGGAGCCATGGTAGACTACTGGCCTAACGGCATCTATTTTGGTTTCGTCT TTCTGCGAGACCAAATCTACAAAGCCGTGGCCAGCATCGGCACCAACCCC TACTTCAAAAACAGTCAGAAGACAGTCGAACCTCACCTCCTGTATGAGTT TCCGGACGACTTTTATGGAGAGGAGCTTAAATTTCTTGTTTGTGGGTACG TGCGTCCTGAAGCTTCCTTTCCTTCGCTTGATGAGCTGGTGAAGGCCATT CGCAATGACATTGCCTTTGCAAGAGCGGCGTTGGAGGAGCCGGAGTGGAA GAAGTTTTCGAGTAATAATTTGGGATGGACTAAGAGTGTGGCATGTTGA back to top
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