|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:899835..902046 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G03000.2 vs.
Match: EWM29757.1 (zinc finger protein [Nannochloropsis gaditana]) HSP 1 Score: 150.6 bits (379), Expect = 1.100e-32 Identity = 129/323 (39.94%), Postives = 168/323 (52.01%), Query Frame = 0
Query: 101 VAHAAAPSSSSSSSSTALSAAVTIPSDPSFDASMSYATAATRRG-----SAMTASSAAFASSSSRSSASTPAARGAPATGYIDLTSELSD-ENELEEETGDEEVQFMGITPGTRQAIRSSDMLLRGLFPAPPVRHRAEG----GNGGGELVAASSGSLPRDMMFTEGLAPLFSHANNLIRLILSHR-PMPVVNRGATNAQIARLPTHTLPRTTTSGVRRGKGTGRKRKAPGEVPVPSNAESENADVKAMAVGQHNASSSSSSRGCVAAAATSGDDPNLNMPDRSSVAATAAEGGLDACTICMEDYKGGEKLCTLPCSHVYHFK 413
V AP++S+ S +A + +A+ SYA+ + G S +TAS+ S+ RS+ Y+DLT E + E E EE +EEVQ +G+ PG R++ R+SD +LRGLFP PP+RHR+ G G G G LVAA + + F LAPLFSHANNLIRLILS R P ++RGAT AQI+RLP H +PR S +KRKA S+ + A + + G AAA G + DR + T E CTIC+E YKGGEKLCTLPC+HVYHFK
Sbjct: 14 VPRLRAPNNSAGRSPGGATAIL--------EANQSYASDESGNGEYIEESMVTASAPYTMSNEGRSTRDA---------NYVDLTQERDEPEEEGREEEVEEEVQVLGVRPGPRRSGRASDSMLRGLFPPPPIRHRSAGMTMRGRGLGGLVAARDAA----VAFPPELAPLFSHANNLIRLILSQRHGGPTIHRGATEAQISRLPVHFVPRQARS---------KKRKA-------SDISTAREKCGATCAAGADVNGILCQTGPGGAAARVGLGSEAHARDRPAGRETEEEEEGGTCTICLEKYKGGEKLCTLPCAHVYHFK 299
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G03000.2 ID=NO03G03000.2|Name=NO03G03000.2|organism=Nannochloropsis oceanica|type=mRNA|length=2144bp TCGAGCCCCTACATCCATGGCACTATATTAAAGGCACCGGAGGTGGTTGA CAGATATGGAGAGATTATGAGTAGTGATTTATTACTATGTTTGCATCAGA AAAATATGAAGAAAGGGCGCGTAGTCAATGCGGCCTGGACTATGAGTGCC ACGGGTTTCTCTGTTCTTCCGAAGTCACACCACCAAAAAATGGATTCCCG GAGCATGGACACGCCTTTAACAGACCTCTCGCACTGTCCTCCTTGTCCTA AGTCAGTGTCTGAGTGTAGATCGAGCGGGCGTTTGGGCCTGGTTTGTTGT CCTGCGGAAATGAAGTGTAACGCTGTCGGCGAGTTCGGTCCCCGTCGCCA TAATGCATCATCGCACGCGGCCCGACGTACGAAGCCGCTCTCTCCTCCTA AAATCATTGGTATATCTAGTCCTCATGCCATCTTCCCAACTTCTACAGAT AACGCGAGGCCAGGTGTGGCGGCGCGAGTCGTCGTCGGCGCCGCTTTCTG ACTCCCAAATAATGCCGTCCCCACGGCACCCCAAGTTCGCTGCAGCCGTC AGCTCACAACAAGCGAACAAGCGGCGCCGCCAAGCTCCCGCCACGCCGAG TGCTGCCAGTGGATCCGCCGCCTCGGCATCTACTTTCCCGTCCTCCAGCT CGGTGGCACATGCAGCAGCGCCCTCCTCGTCTTCCAGCAGCTCCAGCACC GCCTTATCTGCCGCCGTAACTATTCCCTCCGACCCGAGCTTTGACGCCAG CATGTCGTATGCAACAGCAGCAACCCGTCGCGGCTCCGCCATGACAGCCT CGTCCGCTGCTTTTGCCTCGTCCTCGTCTAGGTCCTCTGCTTCTACTCCC GCCGCACGCGGAGCCCCAGCGACAGGCTACATCGACCTGACCAGCGAGTT GAGCGACGAAAATGAGCTGGAGGAGGAGACTGGAGACGAAGAGGTGCAAT TTATGGGCATAACACCTGGGACACGCCAAGCAATCCGGTCCTCAGACATG CTGTTACGCGGACTCTTTCCCGCTCCCCCTGTCCGTCACCGAGCCGAAGG TGGCAATGGCGGTGGCGAACTGGTTGCTGCCAGCAGTGGTAGCCTTCCTC GTGACATGATGTTCACTGAGGGTTTGGCTCCGCTCTTTTCGCACGCCAAT AACCTGATTCGCCTCATCCTCTCGCATCGACCTATGCCTGTCGTAAACCG AGGTGCCACCAACGCCCAGATCGCCCGCCTACCCACGCACACCCTCCCGC GCACCACCACCAGCGGTGTTCGCAGGGGGAAGGGAACAGGAAGGAAGCGC AAGGCCCCGGGGGAGGTGCCTGTCCCTTCCAACGCCGAGTCAGAGAATGC TGACGTCAAGGCCATGGCTGTAGGTCAGCATAATGCAAGCAGCAGCAGCA GCAGCAGGGGTTGTGTAGCAGCGGCAGCCACCTCGGGGGACGATCCAAAT TTGAATATGCCGGACAGATCCAGCGTGGCGGCAACAGCGGCGGAGGGGGG GCTGGATGCATGCACTATTTGCATGGAGGATTACAAGGGTGGGGAGAAAC TTTGTACGCTGCCCTGCTCGCACGTCTACCACTTCAAGGTACGAGAAGAC ACAAATGGATGGGAAGGCGATCCAAATAGGGAAAGATTTATATTCTCTCA TGTTTAAGGTGTGAGTTGTCACTCACCCGCTTTTCTTCCACGCCCCCTTT TTCGCCAACAGTGCTGCAAGAAGTGGTTGAAGACAAACAATATCTGTTGC ATCTGCCGGGCGTCAATTGACAGCGGCTCTCCCTAAGGATACCAAAACAC CACTAGGATTTTTTCCCATACACATAGAGACCAGCCTGATCAGCAACAGG AGCCGGAGGAAAGCGAGGGCGAGGAGGAGGAGGAGGAGGAAGAGGTTCAG GATGTGAAGGAAAAGAAAGGGGGGTTTGAAATATGAAGAGAAGGAGAAGT AAGAGGAGGACCAGGACCAGGAGGAAAAGGAAGAAGAGGAGGAGCACGAA AGGAAGCGACGAAATAGTGTAGAGAGCAGTACATACACCACAATTCAACA AGAATGGAGTTACCATTCAAGGCAAATGAAGTAAAGAAGGGAAAAAATAG TGTGAAATTTACCGGGGAGTGGTGTGGATTGGCCATGCATTCTT back to topprotein sequence of NO03G03000.2 >NO03G03000.2-protein ID=NO03G03000.2-protein|Name=NO03G03000.2|organism=Nannochloropsis oceanica|type=polypeptide|length=435bp MHHRTRPDVRSRSLLLKSLVYLVLMPSSQLLQITRGQVWRRESSSAPLSD SQIMPSPRHPKFAAAVSSQQANKRRRQAPATPSAASGSAASASTFPSSSS VAHAAAPSSSSSSSSTALSAAVTIPSDPSFDASMSYATAATRRGSAMTAS SAAFASSSSRSSASTPAARGAPATGYIDLTSELSDENELEEETGDEEVQF MGITPGTRQAIRSSDMLLRGLFPAPPVRHRAEGGNGGGELVAASSGSLPR DMMFTEGLAPLFSHANNLIRLILSHRPMPVVNRGATNAQIARLPTHTLPR TTTSGVRRGKGTGRKRKAPGEVPVPSNAESENADVKAMAVGQHNASSSSS SRGCVAAAATSGDDPNLNMPDRSSVAATAAEGGLDACTICMEDYKGGEKL CTLPCSHVYHFKVREDTNGWEGDPNRERFIFSHV* back to topmRNA from alignment at chr3:899835..902046+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G03000.2 ID=NO03G03000.2|Name=NO03G03000.2|organism=Nannochloropsis oceanica|type=mRNA|length=2212bp|location=Sequence derived from alignment at chr3:899835..902046+ (Nannochloropsis oceanica) TCGAGCCCCTACATCCATGGCACTATATTAAAGGCACCGGAGGTGGTTGA
CAGATATGGAGAGATTATGAGTAGTGATTTATTACTATGTTTGCATCAGA
AAAATATGAAGAAAGGGCGCGTAGTCAATGCGGCCTGGACTATGAGTGCC
ACGGGTTTCTCTGTTCTTCCGAAGTCACACCACCAAAAAATGGATTCCCG
GAGCATGGACACGCCTTTAACAGACCTCTCGCACTGTCCTCCTTGTCCTA
AGTCAGTGTCTGAGTGTAGATCGAGCGGGCGTTTGGGCCTGGTTTGTTGT
CCTGCGGAAATGAAGTGTAACGCTGTCGGCGAGTTCGGTCCCCGTCGCCA
TAATGCATCATCGCACGCGGCCCGACGTACGAAGCCGCTCTCTCCTCCTA
AAATCATTGGTATATCTAGTCCTCATGCCATCTTCCCAACTTCTACAGAT
AACGCGAGGCCAGGTGTGGCGGCGCGAGTCGTCGTCGGCGCCGCTTTCTG
ACTCCCAAATGTAAGCAAGCTGGTTGTTTCGCACCCCTCCATGCTATGAA
TGACCACAACCTGCATACCCACATACAGAATGCCGTCCCCACGGCACCCC
AAGTTCGCTGCAGCCGTCAGCTCACAACAAGCGAACAAGCGGCGCCGCCA
AGCTCCCGCCACGCCGAGTGCTGCCAGTGGATCCGCCGCCTCGGCATCTA
CTTTCCCGTCCTCCAGCTCGGTGGCACATGCAGCAGCGCCCTCCTCGTCT
TCCAGCAGCTCCAGCACCGCCTTATCTGCCGCCGTAACTATTCCCTCCGA
CCCGAGCTTTGACGCCAGCATGTCGTATGCAACAGCAGCAACCCGTCGCG
GCTCCGCCATGACAGCCTCGTCCGCTGCTTTTGCCTCGTCCTCGTCTAGG
TCCTCTGCTTCTACTCCCGCCGCACGCGGAGCCCCAGCGACAGGCTACAT
CGACCTGACCAGCGAGTTGAGCGACGAAAATGAGCTGGAGGAGGAGACTG
GAGACGAAGAGGTGCAATTTATGGGCATAACACCTGGGACACGCCAAGCA
ATCCGGTCCTCAGACATGCTGTTACGCGGACTCTTTCCCGCTCCCCCTGT
CCGTCACCGAGCCGAAGGTGGCAATGGCGGTGGCGAACTGGTTGCTGCCA
GCAGTGGTAGCCTTCCTCGTGACATGATGTTCACTGAGGGTTTGGCTCCG
CTCTTTTCGCACGCCAATAACCTGATTCGCCTCATCCTCTCGCATCGACC
TATGCCTGTCGTAAACCGAGGTGCCACCAACGCCCAGATCGCCCGCCTAC
CCACGCACACCCTCCCGCGCACCACCACCAGCGGTGTTCGCAGGGGGAAG
GGAACAGGAAGGAAGCGCAAGGCCCCGGGGGAGGTGCCTGTCCCTTCCAA
CGCCGAGTCAGAGAATGCTGACGTCAAGGCCATGGCTGTAGGTCAGCATA
ATGCAAGCAGCAGCAGCAGCAGCAGGGGTTGTGTAGCAGCGGCAGCCACC
TCGGGGGACGATCCAAATTTGAATATGCCGGACAGATCCAGCGTGGCGGC
AACAGCGGCGGAGGGGGGGCTGGATGCATGCACTATTTGCATGGAGGATT
ACAAGGGTGGGGAGAAACTTTGTACGCTGCCCTGCTCGCACGTCTACCAC
TTCAAGGTACGAGAAGACACAAATGGATGGGAAGGCGATCCAAATAGGGA
AAGATTTATATTCTCTCATGTTTAAGGTGTGAGTTGTCACTCACCCGCTT
TTCTTCCACGCCCCCTTTTTCGCCAACAGTGCTGCAAGAAGTGGTTGAAG
ACAAACAATATCTGTTGCATCTGCCGGGCGTCAATTGACAGCGGCTCTCC
CTAAGGATACCAAAACACCACTAGGATTTTTTCCCATACACATAGAGACC
AGCCTGATCAGCAACAGGAGCCGGAGGAAAGCGAGGGCGAGGAGGAGGAG
GAGGAGGAAGAGGTTCAGGATGTGAAGGAAAAGAAAGGGGGGTTTGAAAT
ATGAAGAGAAGGAGAAGTAAGAGGAGGACCAGGACCAGGAGGAAAAGGAA
GAAGAGGAGGAGCACGAAAGGAAGCGACGAAATAGTGTAGAGAGCAGTAC
ATACACCACAATTCAACAAGAATGGAGTTACCATTCAAGGCAAATGAAGT
AAAGAAGGGAAAAAATAGTGTGAAATTTACCGGGGAGTGGTGTGGATTGG
CCATGCATTCTT back to topCoding sequence (CDS) from alignment at chr3:899835..902046+ >NO03G03000.2 ID=NO03G03000.2|Name=NO03G03000.2|organism=Nannochloropsis oceanica|type=CDS|length=1305bp|location=Sequence derived from alignment at chr3:899835..902046+ (Nannochloropsis oceanica) ATGCATCATCGCACGCGGCCCGACGTACGAAGCCGCTCTCTCCTCCTAAA ATCATTGGTATATCTAGTCCTCATGCCATCTTCCCAACTTCTACAGATAA CGCGAGGCCAGGTGTGGCGGCGCGAGTCGTCGTCGGCGCCGCTTTCTGAC TCCCAAATAATGCCGTCCCCACGGCACCCCAAGTTCGCTGCAGCCGTCAG CTCACAACAAGCGAACAAGCGGCGCCGCCAAGCTCCCGCCACGCCGAGTG CTGCCAGTGGATCCGCCGCCTCGGCATCTACTTTCCCGTCCTCCAGCTCG GTGGCACATGCAGCAGCGCCCTCCTCGTCTTCCAGCAGCTCCAGCACCGC CTTATCTGCCGCCGTAACTATTCCCTCCGACCCGAGCTTTGACGCCAGCA TGTCGTATGCAACAGCAGCAACCCGTCGCGGCTCCGCCATGACAGCCTCG TCCGCTGCTTTTGCCTCGTCCTCGTCTAGGTCCTCTGCTTCTACTCCCGC CGCACGCGGAGCCCCAGCGACAGGCTACATCGACCTGACCAGCGAGTTGA GCGACGAAAATGAGCTGGAGGAGGAGACTGGAGACGAAGAGGTGCAATTT ATGGGCATAACACCTGGGACACGCCAAGCAATCCGGTCCTCAGACATGCT GTTACGCGGACTCTTTCCCGCTCCCCCTGTCCGTCACCGAGCCGAAGGTG GCAATGGCGGTGGCGAACTGGTTGCTGCCAGCAGTGGTAGCCTTCCTCGT GACATGATGTTCACTGAGGGTTTGGCTCCGCTCTTTTCGCACGCCAATAA CCTGATTCGCCTCATCCTCTCGCATCGACCTATGCCTGTCGTAAACCGAG GTGCCACCAACGCCCAGATCGCCCGCCTACCCACGCACACCCTCCCGCGC ACCACCACCAGCGGTGTTCGCAGGGGGAAGGGAACAGGAAGGAAGCGCAA GGCCCCGGGGGAGGTGCCTGTCCCTTCCAACGCCGAGTCAGAGAATGCTG ACGTCAAGGCCATGGCTGTAGGTCAGCATAATGCAAGCAGCAGCAGCAGC AGCAGGGGTTGTGTAGCAGCGGCAGCCACCTCGGGGGACGATCCAAATTT GAATATGCCGGACAGATCCAGCGTGGCGGCAACAGCGGCGGAGGGGGGGC TGGATGCATGCACTATTTGCATGGAGGATTACAAGGGTGGGGAGAAACTT TGTACGCTGCCCTGCTCGCACGTCTACCACTTCAAGGTACGAGAAGACAC AAATGGATGGGAAGGCGATCCAAATAGGGAAAGATTTATATTCTCTCATG TTTAA back to top
|