NO03G01150.1, NO03G01150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01150.1
Unique NameNO03G01150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1745
Alignment locationchr3:356844..358588 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:356844..358588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G01150.1 vs.
Match: EWM29586.1 (peptide chain release factor 1 [Nannochloropsis gaditana])

HSP 1 Score: 590.1 bits (1520), Expect = 5.600e-165
Identity = 322/432 (74.54%), Postives = 362/432 (83.80%), Query Frame = 0 
Query:    7 IGCCATNRQATARTANTCTS---PPSTTSTRRRPLLHASSLLRAPRRPLSTFTPAVLTRLDQMRVRHAQVEDELNSLHTAASADGSGQPQQQYQSGSQSAVMRLAALSKELAELSELVDLIEELEKHRADVRFLEDTAKGDPDPEMAAMAKEDVASARNAVVALEERVLRRLLPKDAGDDDRGVILEVRAGTGGDEASLFAGEVFGMYERFAAAQKWRFEILSASKNEFGGLKEAAAAVQGHLAYPALKFESGVHRVQRVPVNDSRLHTSAATVAVLPEPQEVDFKLDTRDLKFDVYRASGAGGQHVNTTESAVRVTHVPSGIVVAIQDERSQHKNKDKAIKILRARVYEREQAKVMAAQASTRKSQVGSGDRSERIRTYNFAQDRVTDHRISLSKHGIDRMMGGELLKEFSEALQSAEEAEKLRQLLKGEV 436
            + C       T RTA T ++    P     RRRP     +         STFTPAVLTRLDQMR R+AQVE EL++LHT     G+ Q  + +Q  S +   RLAALSKEL+ELS+LV+L ++LEKHR++VRFLE+T KGDPDP+MAAMAKEDV SAR+AV ALEE++LR+LLPK+  +DDRGVILEVRAGTGGDEASLFAGE+F MYERFAA Q WRFEIL+ SKNEFGGLKEAAAAVQGH+AYP LKFESGVHRVQRVPVNDSRLHTSAATVAVLPEPQ+VDFKLD RDLKFDVYRASGAGGQHVNTTESAVRVTH P+G+VV+IQDERSQHKNKDKAIKILRARVYE EQA+VMAAQAS RKSQVGSGDRSERIRTYNF+QDRVTDHRISLSKHGIDRMM G+LL EF EAL+SAEEAE+LR LL+GE+
Sbjct:    3 VSCVLRRLGGTRRTATTTSAFSHVPFWPCIRRRPRPQTRAPPSKSWSLFSTFTPAVLTRLDQMRQRYAQVEKELSALHTGNDG-GTHQQHEPHQHHSAANTTRLAALSKELSELSDLVELTQDLEKHRSNVRFLEETVKGDPDPDMAAMAKEDVGSARDAVTALEEKILRQLLPKELKNDDRGVILEVRAGTGGDEASLFAGEMFDMYERFAARQNWRFEILNVSKNEFGGLKEAAAAVQGHMAYPLLKFESGVHRVQRVPVNDSRLHTSAATVAVLPEPQDVDFKLDARDLKFDVYRASGAGGQHVNTTESAVRVTHTPTGLVVSIQDERSQHKNKDKAIKILRARVYEMEQARVMAAQASARKSQVGSGDRSERIRTYNFSQDRVTDHRISLSKHGIDRMMDGDLLGEFGEALRSAEEAERLRLLLEGEI 433
The following BLAST results are available for this feature:
BLAST of NO03G01150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29586.15.600e-16574.54peptide chain release factor 1 [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01150NO03G01150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01150.1NO03G01150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01150.1.cds1NO03G01150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01150.1 ID=NO03G01150.1|Name=NO03G01150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1745bp
CCTTTCGCGCCCTCTGGATGGAGCTGTAGACCGCACAACTTAAGACCCTA
ACGACACGAAAGCAACAGACTGATTTCAAATAAGCGATTTAACAACAGAT
ATGAGAGAGTCAATGCGGTGTGGATATCATGCTGGCGCTTTATATGTCAC
TTTAATTGATGGTGCGATCGGTACCGCGATCTGGGTCGCGGTTGGGGAGG
AGTGAGAGAGCGGGATGCTGCTTGTCGTCCCATCCAAGCGCCAACCGGGG
TATCCTTCCATTTCTAAGCCACACCAAACACGCAGCACAGGGCACACAGC
TTGTTGATTAGGAGAAGAACGCTGTAGCTATGCAGCGCATGGTACGGATC
GGCTGTTGTGCCACCAACAGACAAGCAACGGCAAGAACCGCCAATACTTG
CACCTCCCCACCCTCCACTACCAGCACGCGGCGACGACCCCTGTTACACG
CATCATCGCTATTAAGAGCACCGCGACGGCCCCTCTCAACCTTTACGCCA
GCAGTCTTGACCAGGTTGGATCAGATGCGCGTGCGCCATGCTCAGGTGGA
GGATGAGTTAAATAGTCTGCATACAGCTGCCTCTGCGGACGGCAGTGGGC
AACCGCAGCAGCAGTACCAGTCTGGCAGTCAATCGGCGGTGATGCGTTTG
GCGGCGTTGTCCAAAGAGCTCGCGGAGCTTTCGGAGCTTGTCGACCTGAT
TGAAGAGTTGGAAAAGCACCGTGCGGACGTTCGCTTCTTGGAGGACACGG
CAAAAGGAGACCCTGACCCCGAAATGGCAGCCATGGCCAAGGAAGACGTG
GCCAGCGCCCGCAACGCCGTGGTGGCGCTTGAGGAGAGGGTGCTACGACG
ACTGTTGCCGAAGGATGCCGGAGATGATGACCGGGGTGTAATTTTGGAGG
TGCGGGCGGGAACGGGAGGGGATGAGGCGTCATTGTTTGCCGGCGAGGTC
TTTGGCATGTACGAACGCTTTGCCGCCGCACAGAAGTGGCGTTTTGAAAT
TTTGAGTGCGTCCAAGAATGAATTTGGGGGGTTGAAGGAAGCGGCTGCGG
CTGTTCAAGGTCATTTAGCGTACCCTGCGCTCAAGTTTGAGAGTGGCGTG
CATCGTGTGCAACGTGTGCCGGTGAACGACAGCCGGCTCCATACCTCGGC
GGCAACAGTTGCCGTGCTGCCCGAGCCTCAAGAGGTGGACTTTAAATTGG
ATACACGTGATCTCAAATTTGATGTTTATCGCGCAAGTGGTGCAGGGGGC
CAGCATGTCAACACCACTGAAAGCGCCGTCCGCGTCACGCACGTGCCCTC
AGGCATCGTCGTCGCTATCCAAGACGAGCGGTCACAACATAAAAACAAGG
ACAAAGCCATTAAAATTCTGCGTGCGCGGGTCTACGAGAGAGAGCAAGCC
AAGGTTATGGCTGCACAAGCCTCGACACGTAAATCGCAGGTGGGGTCGGG
GGATCGATCGGAGCGCATTCGAACGTATAATTTTGCGCAGGACCGAGTGA
CGGACCACAGGATTAGTTTGAGCAAACATGGCATAGATAGGATGATGGGA
GGGGAATTACTCAAAGAATTCAGTGAGGCGCTGCAGAGCGCGGAGGAGGC
GGAGAAACTTAGGCAATTACTGAAAGGGGAGGTCTGAAGAAATGAAGGAG
AGAATTACGGACATGAAAAGAAAAGTACACACAACAATTTGTAGGATTAA
AATAGAAGAATCAAATACTAAGCACCAAGATAAGAAACAGAGACG
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protein sequence of NO03G01150.1

>NO03G01150.1-protein ID=NO03G01150.1-protein|Name=NO03G01150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MQRMVRIGCCATNRQATARTANTCTSPPSTTSTRRRPLLHASSLLRAPRR
PLSTFTPAVLTRLDQMRVRHAQVEDELNSLHTAASADGSGQPQQQYQSGS
QSAVMRLAALSKELAELSELVDLIEELEKHRADVRFLEDTAKGDPDPEMA
AMAKEDVASARNAVVALEERVLRRLLPKDAGDDDRGVILEVRAGTGGDEA
SLFAGEVFGMYERFAAAQKWRFEILSASKNEFGGLKEAAAAVQGHLAYPA
LKFESGVHRVQRVPVNDSRLHTSAATVAVLPEPQEVDFKLDTRDLKFDVY
RASGAGGQHVNTTESAVRVTHVPSGIVVAIQDERSQHKNKDKAIKILRAR
VYEREQAKVMAAQASTRKSQVGSGDRSERIRTYNFAQDRVTDHRISLSKH
GIDRMMGGELLKEFSEALQSAEEAEKLRQLLKGEV*
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mRNA from alignment at chr3:356844..358588-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01150.1 ID=NO03G01150.1|Name=NO03G01150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1745bp|location=Sequence derived from alignment at chr3:356844..358588- (Nannochloropsis oceanica)
CCTTTCGCGCCCTCTGGATGGAGCTGTAGACCGCACAACTTAAGACCCTA
ACGACACGAAAGCAACAGACTGATTTCAAATAAGCGATTTAACAACAGAT
ATGAGAGAGTCAATGCGGTGTGGATATCATGCTGGCGCTTTATATGTCAC
TTTAATTGATGGTGCGATCGGTACCGCGATCTGGGTCGCGGTTGGGGAGG
AGTGAGAGAGCGGGATGCTGCTTGTCGTCCCATCCAAGCGCCAACCGGGG
TATCCTTCCATTTCTAAGCCACACCAAACACGCAGCACAGGGCACACAGC
TTGTTGATTAGGAGAAGAACGCTGTAGCTATGCAGCGCATGGTACGGATC
GGCTGTTGTGCCACCAACAGACAAGCAACGGCAAGAACCGCCAATACTTG
CACCTCCCCACCCTCCACTACCAGCACGCGGCGACGACCCCTGTTACACG
CATCATCGCTATTAAGAGCACCGCGACGGCCCCTCTCAACCTTTACGCCA
GCAGTCTTGACCAGGTTGGATCAGATGCGCGTGCGCCATGCTCAGGTGGA
GGATGAGTTAAATAGTCTGCATACAGCTGCCTCTGCGGACGGCAGTGGGC
AACCGCAGCAGCAGTACCAGTCTGGCAGTCAATCGGCGGTGATGCGTTTG
GCGGCGTTGTCCAAAGAGCTCGCGGAGCTTTCGGAGCTTGTCGACCTGAT
TGAAGAGTTGGAAAAGCACCGTGCGGACGTTCGCTTCTTGGAGGACACGG
CAAAAGGAGACCCTGACCCCGAAATGGCAGCCATGGCCAAGGAAGACGTG
GCCAGCGCCCGCAACGCCGTGGTGGCGCTTGAGGAGAGGGTGCTACGACG
ACTGTTGCCGAAGGATGCCGGAGATGATGACCGGGGTGTAATTTTGGAGG
TGCGGGCGGGAACGGGAGGGGATGAGGCGTCATTGTTTGCCGGCGAGGTC
TTTGGCATGTACGAACGCTTTGCCGCCGCACAGAAGTGGCGTTTTGAAAT
TTTGAGTGCGTCCAAGAATGAATTTGGGGGGTTGAAGGAAGCGGCTGCGG
CTGTTCAAGGTCATTTAGCGTACCCTGCGCTCAAGTTTGAGAGTGGCGTG
CATCGTGTGCAACGTGTGCCGGTGAACGACAGCCGGCTCCATACCTCGGC
GGCAACAGTTGCCGTGCTGCCCGAGCCTCAAGAGGTGGACTTTAAATTGG
ATACACGTGATCTCAAATTTGATGTTTATCGCGCAAGTGGTGCAGGGGGC
CAGCATGTCAACACCACTGAAAGCGCCGTCCGCGTCACGCACGTGCCCTC
AGGCATCGTCGTCGCTATCCAAGACGAGCGGTCACAACATAAAAACAAGG
ACAAAGCCATTAAAATTCTGCGTGCGCGGGTCTACGAGAGAGAGCAAGCC
AAGGTTATGGCTGCACAAGCCTCGACACGTAAATCGCAGGTGGGGTCGGG
GGATCGATCGGAGCGCATTCGAACGTATAATTTTGCGCAGGACCGAGTGA
CGGACCACAGGATTAGTTTGAGCAAACATGGCATAGATAGGATGATGGGA
GGGGAATTACTCAAAGAATTCAGTGAGGCGCTGCAGAGCGCGGAGGAGGC
GGAGAAACTTAGGCAATTACTGAAAGGGGAGGTCTGAAGAAATGAAGGAG
AGAATTACGGACATGAAAAGAAAAGTACACACAACAATTTGTAGGATTAA
AATAGAAGAATCAAATACTAAGCACCAAGATAAGAAACAGAGACG
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Coding sequence (CDS) from alignment at chr3:356844..358588-

>NO03G01150.1 ID=NO03G01150.1|Name=NO03G01150.1|organism=Nannochloropsis oceanica|type=CDS|length=1308bp|location=Sequence derived from alignment at chr3:356844..358588- (Nannochloropsis oceanica)
ATGCAGCGCATGGTACGGATCGGCTGTTGTGCCACCAACAGACAAGCAAC
GGCAAGAACCGCCAATACTTGCACCTCCCCACCCTCCACTACCAGCACGC
GGCGACGACCCCTGTTACACGCATCATCGCTATTAAGAGCACCGCGACGG
CCCCTCTCAACCTTTACGCCAGCAGTCTTGACCAGGTTGGATCAGATGCG
CGTGCGCCATGCTCAGGTGGAGGATGAGTTAAATAGTCTGCATACAGCTG
CCTCTGCGGACGGCAGTGGGCAACCGCAGCAGCAGTACCAGTCTGGCAGT
CAATCGGCGGTGATGCGTTTGGCGGCGTTGTCCAAAGAGCTCGCGGAGCT
TTCGGAGCTTGTCGACCTGATTGAAGAGTTGGAAAAGCACCGTGCGGACG
TTCGCTTCTTGGAGGACACGGCAAAAGGAGACCCTGACCCCGAAATGGCA
GCCATGGCCAAGGAAGACGTGGCCAGCGCCCGCAACGCCGTGGTGGCGCT
TGAGGAGAGGGTGCTACGACGACTGTTGCCGAAGGATGCCGGAGATGATG
ACCGGGGTGTAATTTTGGAGGTGCGGGCGGGAACGGGAGGGGATGAGGCG
TCATTGTTTGCCGGCGAGGTCTTTGGCATGTACGAACGCTTTGCCGCCGC
ACAGAAGTGGCGTTTTGAAATTTTGAGTGCGTCCAAGAATGAATTTGGGG
GGTTGAAGGAAGCGGCTGCGGCTGTTCAAGGTCATTTAGCGTACCCTGCG
CTCAAGTTTGAGAGTGGCGTGCATCGTGTGCAACGTGTGCCGGTGAACGA
CAGCCGGCTCCATACCTCGGCGGCAACAGTTGCCGTGCTGCCCGAGCCTC
AAGAGGTGGACTTTAAATTGGATACACGTGATCTCAAATTTGATGTTTAT
CGCGCAAGTGGTGCAGGGGGCCAGCATGTCAACACCACTGAAAGCGCCGT
CCGCGTCACGCACGTGCCCTCAGGCATCGTCGTCGCTATCCAAGACGAGC
GGTCACAACATAAAAACAAGGACAAAGCCATTAAAATTCTGCGTGCGCGG
GTCTACGAGAGAGAGCAAGCCAAGGTTATGGCTGCACAAGCCTCGACACG
TAAATCGCAGGTGGGGTCGGGGGATCGATCGGAGCGCATTCGAACGTATA
ATTTTGCGCAGGACCGAGTGACGGACCACAGGATTAGTTTGAGCAAACAT
GGCATAGATAGGATGATGGGAGGGGAATTACTCAAAGAATTCAGTGAGGC
GCTGCAGAGCGCGGAGGAGGCGGAGAAACTTAGGCAATTACTGAAAGGGG
AGGTCTGA
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Synonyms
Publications