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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:307039..308343 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G00940.1 vs.
Match: EWM29593.1 (S-adenosyl-L-methionine-dependent methyltransferase-like protein [Nannochloropsis gaditana]) HSP 1 Score: 286.2 bits (731), Expect = 1.700e-73 Identity = 190/446 (42.60%), Postives = 253/446 (56.73%), Query Frame = 0
Query: 11 TSSPPTEPPTEPPTVEATSLSSTAQAPAPDQQEAPTKELQFVFPAFRPRILALRNVS----------KNDGKVLIKLRPPLTCPVPSPPSFSSKL---------WQRHAHGSYRSYYGARRQASSTDIASAAAIIPSTIHLPPASRSNPPTDARLSLLQPEWFAGKDFLDIGTNTGKVAWEICLYFKPRRVVGVDIDPELIRVAKEKLAWASRREGGRNDIEKWVEFRCQDF----VGRRMLKRRRWKG-DGQECIGGAAAEEDGGVDWKDVRIKGWKEYGTSESREFGEERQNTEEVKAEKKEDEKDDENEVQMD------VEGTE----------KYDIISCFSVTKHIHLQGGDAALRRLLHRVHARLRPGGRFILEPQAWRTYRKRRHASVESRKNYTLLRLRPPFKDVLMNEVGFESVEDLGIPLNAPVGYRRPMYCFVKR 417
TSS P +P V + P +++P + FRPR+LAL+N S K D ++ + P +C + S S SS L WQRHAHGSYR+YYGARR+ + ST +R+ DARL LL PEWF KD LD+GTNTGKVAWEI ++PR +VGVDID ELIRVA+EKLAWA R+G +D K++ F CQDF + + RR +G + + I E + W+ R K K G E+ + + ++E+ +K + + VQ D +EG E K+D+I+C SVTKH+HLQGGD+AL RL R++ LRPGGR ILEPQAWRTYRKR++AS ESR+N+ LLRLRPPF L+ +GF+SVE+LGIP AP G++R M+CFVK+
Sbjct: 3 TSSLPPQP-----AVSVEIAARQPDLPLLSSRQSPRTNTRI----FRPRVLALQNRSAESGPCRSFLKRDDRIRMGHLPSPSCTLHSTDSPSSSLLRSLSSSFRWQRHAHGSYRAYYGARRR----------PVAASTFSTSSDTRAG-NKDARLELLSPEWFVHKDCLDVGTNTGKVAWEIYESYRPRCMVGVDIDEELIRVAREKLAWAKARDGKEHD--KYISFLCQDFAQDTLEEEETEDRRMEGSESEHGITNGGTERVPRMIWEG-REKRKKAGG--ETAYLSDGMKQSDEIHRDKGVELSGMKWTVQKDGLGVKKIEGLERGEGRGKASRKFDVITCLSVTKHVHLQGGDSALLRLFRRMYEALRPGGRLILEPQAWRTYRKRKNASKESRENFPLLRLRPPFTQDLLETIGFQSVEELGIPPRAPEGFKRAMFCFVKK 423
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G00940.1 ID=NO03G00940.1|Name=NO03G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1305bp ATGAAGCCCGAGCTTAATGCGCTGTCGTCAACCTCCTCCCCCCCTACCGA GCCTCCTACCGAGCCTCCTACCGTCGAGGCAACCTCACTGTCCTCCACAG CACAAGCACCTGCGCCAGATCAACAAGAAGCACCAACGAAAGAATTGCAA TTTGTCTTTCCAGCCTTTCGACCGCGGATCTTGGCTCTAAGAAACGTTTC CAAGAACGACGGCAAAGTCCTAATTAAGCTGCGTCCGCCCCTCACTTGTC CCGTCCCTTCACCGCCATCTTTTTCCTCCAAGCTCTGGCAACGTCATGCC CACGGATCCTATCGCTCCTACTATGGCGCACGTCGTCAAGCTTCCTCCAC AGATATAGCGTCTGCTGCTGCCATCATCCCAAGCACCATCCATCTGCCTC CAGCCTCCAGAAGCAATCCCCCAACAGACGCCCGTCTCTCCTTACTGCAA CCCGAATGGTTTGCTGGTAAAGATTTCTTAGACATAGGAACTAACACGGG GAAAGTTGCCTGGGAAATTTGTCTATATTTCAAGCCTAGACGGGTGGTGG GTGTGGATATTGATCCGGAGCTCATAAGAGTTGCAAAGGAGAAGCTGGCG TGGGCATCCCGGAGAGAGGGAGGGAGGAATGACATCGAAAAATGGGTGGA GTTTCGGTGTCAGGATTTCGTGGGTAGGAGGATGTTGAAGAGAAGGAGAT GGAAAGGGGATGGGCAGGAATGTATAGGGGGGGCTGCCGCAGAGGAAGAC GGGGGTGTAGACTGGAAGGATGTCAGGATTAAAGGATGGAAGGAGTATGG GACGAGTGAATCAAGAGAATTCGGAGAGGAGCGACAAAATACTGAGGAGG TTAAGGCGGAGAAGAAGGAGGATGAGAAGGATGATGAGAATGAGGTGCAG ATGGATGTGGAAGGGACGGAAAAATACGACATCATAAGCTGTTTCTCGGT TACAAAACATATACATTTACAAGGCGGAGACGCCGCGCTCCGTCGACTCC TCCATCGAGTCCACGCACGACTACGGCCAGGTGGCCGATTTATCCTCGAG CCACAGGCATGGCGAACGTATCGAAAACGGAGGCATGCCTCGGTGGAATC TCGGAAAAATTACACTCTGTTACGTCTTCGGCCGCCCTTCAAAGATGTAT TGATGAACGAGGTTGGATTTGAGAGCGTAGAGGACCTGGGGATTCCACTC AATGCACCAGTGGGGTATAGAAGGCCAATGTATTGTTTTGTCAAAAGGAG AGAAGAAGCCGAAGAAAGTGTGGAGAGAGGTCAGAAGGGGTCGGTGGGGG AGTAA back to topprotein sequence of NO03G00940.1 >NO03G00940.1-protein ID=NO03G00940.1-protein|Name=NO03G00940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=435bp MKPELNALSSTSSPPTEPPTEPPTVEATSLSSTAQAPAPDQQEAPTKELQ FVFPAFRPRILALRNVSKNDGKVLIKLRPPLTCPVPSPPSFSSKLWQRHA HGSYRSYYGARRQASSTDIASAAAIIPSTIHLPPASRSNPPTDARLSLLQ PEWFAGKDFLDIGTNTGKVAWEICLYFKPRRVVGVDIDPELIRVAKEKLA WASRREGGRNDIEKWVEFRCQDFVGRRMLKRRRWKGDGQECIGGAAAEED GGVDWKDVRIKGWKEYGTSESREFGEERQNTEEVKAEKKEDEKDDENEVQ MDVEGTEKYDIISCFSVTKHIHLQGGDAALRRLLHRVHARLRPGGRFILE PQAWRTYRKRRHASVESRKNYTLLRLRPPFKDVLMNEVGFESVEDLGIPL NAPVGYRRPMYCFVKRREEAEESVERGQKGSVGE* back to topmRNA from alignment at chr3:307039..308343- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G00940.1 ID=NO03G00940.1|Name=NO03G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1305bp|location=Sequence derived from alignment at chr3:307039..308343- (Nannochloropsis oceanica) ATGAAGCCCGAGCTTAATGCGCTGTCGTCAACCTCCTCCCCCCCTACCGA
GCCTCCTACCGAGCCTCCTACCGTCGAGGCAACCTCACTGTCCTCCACAG
CACAAGCACCTGCGCCAGATCAACAAGAAGCACCAACGAAAGAATTGCAA
TTTGTCTTTCCAGCCTTTCGACCGCGGATCTTGGCTCTAAGAAACGTTTC
CAAGAACGACGGCAAAGTCCTAATTAAGCTGCGTCCGCCCCTCACTTGTC
CCGTCCCTTCACCGCCATCTTTTTCCTCCAAGCTCTGGCAACGTCATGCC
CACGGATCCTATCGCTCCTACTATGGCGCACGTCGTCAAGCTTCCTCCAC
AGATATAGCGTCTGCTGCTGCCATCATCCCAAGCACCATCCATCTGCCTC
CAGCCTCCAGAAGCAATCCCCCAACAGACGCCCGTCTCTCCTTACTGCAA
CCCGAATGGTTTGCTGGTAAAGATTTCTTAGACATAGGAACTAACACGGG
GAAAGTTGCCTGGGAAATTTGTCTATATTTCAAGCCTAGACGGGTGGTGG
GTGTGGATATTGATCCGGAGCTCATAAGAGTTGCAAAGGAGAAGCTGGCG
TGGGCATCCCGGAGAGAGGGAGGGAGGAATGACATCGAAAAATGGGTGGA
GTTTCGGTGTCAGGATTTCGTGGGTAGGAGGATGTTGAAGAGAAGGAGAT
GGAAAGGGGATGGGCAGGAATGTATAGGGGGGGCTGCCGCAGAGGAAGAC
GGGGGTGTAGACTGGAAGGATGTCAGGATTAAAGGATGGAAGGAGTATGG
GACGAGTGAATCAAGAGAATTCGGAGAGGAGCGACAAAATACTGAGGAGG
TTAAGGCGGAGAAGAAGGAGGATGAGAAGGATGATGAGAATGAGGTGCAG
ATGGATGTGGAAGGGACGGAAAAATACGACATCATAAGCTGTTTCTCGGT
TACAAAACATATACATTTACAAGGCGGAGACGCCGCGCTCCGTCGACTCC
TCCATCGAGTCCACGCACGACTACGGCCAGGTGGCCGATTTATCCTCGAG
CCACAGGCATGGCGAACGTATCGAAAACGGAGGCATGCCTCGGTGGAATC
TCGGAAAAATTACACTCTGTTACGTCTTCGGCCGCCCTTCAAAGATGTAT
TGATGAACGAGGTTGGATTTGAGAGCGTAGAGGACCTGGGGATTCCACTC
AATGCACCAGTGGGGTATAGAAGGCCAATGTATTGTTTTGTCAAAAGGAG
AGAAGAAGCCGAAGAAAGTGTGGAGAGAGGTCAGAAGGGGTCGGTGGGGG
AGTAA back to topCoding sequence (CDS) from alignment at chr3:307039..308343- >NO03G00940.1 ID=NO03G00940.1|Name=NO03G00940.1|organism=Nannochloropsis oceanica|type=CDS|length=1305bp|location=Sequence derived from alignment at chr3:307039..308343- (Nannochloropsis oceanica) ATGAAGCCCGAGCTTAATGCGCTGTCGTCAACCTCCTCCCCCCCTACCGA GCCTCCTACCGAGCCTCCTACCGTCGAGGCAACCTCACTGTCCTCCACAG CACAAGCACCTGCGCCAGATCAACAAGAAGCACCAACGAAAGAATTGCAA TTTGTCTTTCCAGCCTTTCGACCGCGGATCTTGGCTCTAAGAAACGTTTC CAAGAACGACGGCAAAGTCCTAATTAAGCTGCGTCCGCCCCTCACTTGTC CCGTCCCTTCACCGCCATCTTTTTCCTCCAAGCTCTGGCAACGTCATGCC CACGGATCCTATCGCTCCTACTATGGCGCACGTCGTCAAGCTTCCTCCAC AGATATAGCGTCTGCTGCTGCCATCATCCCAAGCACCATCCATCTGCCTC CAGCCTCCAGAAGCAATCCCCCAACAGACGCCCGTCTCTCCTTACTGCAA CCCGAATGGTTTGCTGGTAAAGATTTCTTAGACATAGGAACTAACACGGG GAAAGTTGCCTGGGAAATTTGTCTATATTTCAAGCCTAGACGGGTGGTGG GTGTGGATATTGATCCGGAGCTCATAAGAGTTGCAAAGGAGAAGCTGGCG TGGGCATCCCGGAGAGAGGGAGGGAGGAATGACATCGAAAAATGGGTGGA GTTTCGGTGTCAGGATTTCGTGGGTAGGAGGATGTTGAAGAGAAGGAGAT GGAAAGGGGATGGGCAGGAATGTATAGGGGGGGCTGCCGCAGAGGAAGAC GGGGGTGTAGACTGGAAGGATGTCAGGATTAAAGGATGGAAGGAGTATGG GACGAGTGAATCAAGAGAATTCGGAGAGGAGCGACAAAATACTGAGGAGG TTAAGGCGGAGAAGAAGGAGGATGAGAAGGATGATGAGAATGAGGTGCAG ATGGATGTGGAAGGGACGGAAAAATACGACATCATAAGCTGTTTCTCGGT TACAAAACATATACATTTACAAGGCGGAGACGCCGCGCTCCGTCGACTCC TCCATCGAGTCCACGCACGACTACGGCCAGGTGGCCGATTTATCCTCGAG CCACAGGCATGGCGAACGTATCGAAAACGGAGGCATGCCTCGGTGGAATC TCGGAAAAATTACACTCTGTTACGTCTTCGGCCGCCCTTCAAAGATGTAT TGATGAACGAGGTTGGATTTGAGAGCGTAGAGGACCTGGGGATTCCACTC AATGCACCAGTGGGGTATAGAAGGCCAATGTATTGTTTTGTCAAAAGGAG AGAAGAAGCCGAAGAAAGTGTGGAGAGAGGTCAGAAGGGGTCGGTGGGGG AGTAA back to top
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