NO02G05260.1, NO02G05260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05260.1
Unique NameNO02G05260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1727
Alignment locationchr2:1403958..1405684 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1403958..1405684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G05260.1 vs.
Match: EWM30129.1 (hypothetical protein Naga_101103g2 [Nannochloropsis gaditana])

HSP 1 Score: 139.4 bits (350), Expect = 2.800e-29
Identity = 143/433 (33.03%), Postives = 201/433 (46.42%), Query Frame = 0 
Query:   27 GEQTEAMLSELGQMQNQLDQNVHVENVQLRGQIQALMNEVAALKGANTLNGGGEGGQSEQTHEQVSA--------NAHALALEAQLQATQTERAYFQALLEEKEDVIVRLQKRLEKQPMRNVMPTPPPSVAPKKNKTQPQQSHVPAGASRQQQHPQDGGDSSCSTRVEGPVAGGGGGEEGAPRRGFRASNLRKSGTTALSSSSSGGNGSNSLDDDAIVGALQGQSEDSNNKMVGYESGSGSSTSP-----FPSLLPSSSLLPSSSLLPSNPIVPPPPSADPRAGVTTTTATSSATTITHFPLLSSSVIGRLTDMLYDEMQLQKFNHPRQTIQSCLECILTLFDIPSTVQELSELCLVFEQQSEAHARVEEVLENLEAGDGMSKPELDCLKRIFDLVLPP---LPEEE-------RGKEEGGIRERGRIEEGVR 437
            G   EA  ++      Q   ++  EN+ LR Q+QAL  EVA LKG       G GG +E   ++            +  +ALEAQLQA+Q+E+ YFQAL+EEK+ VI RLQKR+E+Q                 +KT     H  AG   +                 GP  GG   ++G   RG R   L ++ T A++  S G +G          G   G+S ++ + + G  +G+     P     F S   S +  P  S++            DP  G                 LLS      LTD LY+EMQ  ++NHPR  I++CL+C++ LF +PST   L++    FE Q   H R EEVL NL  G+GMS PELDCL+RIF++V+PP   +P EE        G+ +  +R  G  + GVR
Sbjct:   33 GNTEEASTTDAEPSPAQQFVSLQRENMHLREQVQALNEEVAVLKGKLGGRQNGHGGVAESQGKEAERALLVAHPPTSQVVALEAQLQASQSEKKYFQALIEEKQGVIARLQKRVEEQ-----------------DKT----PHASAGLGSRM----------------GPWPGGF--DDGGEGRGAREERLARAATEAVAEVSQGAHGEG--------GKAGGRSVEAPH-VAGRNAGTREQVEPVDVRTFESRAESMT-CPPLSIVGVGREGATGGGTDPGRGGGREGGRGEGDRA--HELLSLEGRDILTDELYEEMQRHEYNHPRLIIRACLDCLVPLFKVPSTAGALADFRAFFEGQRSIHTRAEEVLGNLRKGEGMSAPELDCLQRIFEVVVPPAARVPREEGVMRLEGEGQRDEEVRRGGSAQAGVR 414
The following BLAST results are available for this feature:
BLAST of NO02G05260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30129.12.800e-2933.03hypothetical protein Naga_101103g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05260NO02G05260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05260.1NO02G05260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05260.1.cds1NO02G05260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05260.1 ID=NO02G05260.1|Name=NO02G05260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1727bp
ACAGGAGCGCGTGGTGACAATGGCGGGCTACCAACAGCAGCCCCACCATC
TCATCAACGGCACACCACCCAACCCCGGAGGAGGAAACCCTCCAGGGGGG
GAGCAGACCGAGGCGATGCTATCTGAGCTAGGACAGATGCAAAACCAGCT
CGACCAAAACGTGCACGTGGAGAACGTACAGCTGCGTGGCCAGATCCAAG
CCTTAATGAACGAGGTCGCAGCTCTCAAAGGCGCGAACACCCTGAATGGT
GGGGGGGAAGGCGGGCAATCAGAACAAACACACGAGCAAGTTTCCGCCAA
CGCCCACGCTCTAGCCCTTGAAGCCCAGCTACAAGCTACACAGACAGAGC
GGGCCTACTTTCAAGCCTTGCTGGAGGAAAAGGAAGACGTGATAGTCCGC
TTGCAAAAACGCTTGGAGAAGCAACCCATGCGAAATGTCATGCCTACTCC
TCCCCCCTCCGTGGCCCCCAAAAAGAACAAGACTCAACCACAGCAATCAC
ACGTCCCCGCCGGTGCTTCGCGCCAGCAACAGCACCCTCAAGATGGCGGA
GACAGCAGTTGTTCTACACGTGTGGAAGGGCCAGTGGCAGGAGGAGGGGG
AGGGGAGGAGGGCGCTCCTCGTCGCGGGTTCCGAGCAAGCAATTTGCGGA
AGAGTGGGACAACCGCCTTGAGCAGCAGCAGCAGTGGTGGAAATGGAAGC
AACAGCCTGGATGACGATGCCATCGTAGGAGCCTTGCAAGGGCAGAGTGA
AGATAGCAACAACAAGATGGTTGGGTACGAGAGCGGGAGCGGAAGCAGCA
CGAGCCCGTTTCCCTCCCTCCTTCCCTCCTCCTCCCTCCTTCCCTCCTCC
TCCCTCCTCCCTTCCAACCCGATCGTTCCTCCTCCTCCTTCTGCAGACCC
CCGCGCAGGCGTCACAACCACTACTGCTACCAGCTCTGCCACCACCATCA
CCCACTTCCCTCTCCTTTCCTCCTCGGTTATCGGCCGTCTCACGGACATG
CTCTATGACGAAATGCAGCTCCAAAAATTCAACCATCCCCGCCAAACGAT
ACAGTCGTGCCTGGAGTGCATCCTCACCCTTTTCGACATTCCGTCTACCG
TTCAGGAATTAAGTGAATTGTGTCTTGTTTTTGAGCAACAGTCCGAGGCC
CATGCCCGCGTGGAGGAGGTGCTCGAGAATTTGGAGGCGGGCGATGGGAT
GAGTAAGCCCGAGTTGGACTGTTTGAAACGGATTTTTGATTTGGTCTTGC
CACCTTTGCCCGAGGAGGAGAGAGGGAAGGAGGAGGGAGGAATTAGGGAA
AGGGGAAGGATAGAGGAAGGGGTAAGGGTGGAGGGGGGGTGGAGGGAGGG
GTGGAGGGAGGAGTGGGGGGAGGGGGAAGAAGGGGAAGGGATTTCATGCG
AGAGCTGATCAGTGCTTTGAACAAATTTCATGGGATGAAAAACAAGAAAC
CGGACCTGGCGTACATGTGTCAAAGGGCCGGTGTGGAGCAGCAGGGTATC
CATACAGTTGAGGCGCTGAGGGAGGGGTTGAAGGACCATCTCGCACTGCA
GGCGGCGTTTATAAATGTTTGTGCCACAATGCCCCCGGGACAACAGTCCT
GTAACCGTCGGTACGTTGCAAGGAAGCTGTTCGAATTTTGTGGCTTGGAT
GCGAGTGTACTGGTGGCCAAAAAGGGAACACAGGGGCGCAAGCCTCCGAT
AAGGAAGAGGGATGGGGTAGGGGGGGG
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protein sequence of NO02G05260.1

>NO02G05260.1-protein ID=NO02G05260.1-protein|Name=NO02G05260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MAGYQQQPHHLINGTPPNPGGGNPPGGEQTEAMLSELGQMQNQLDQNVHV
ENVQLRGQIQALMNEVAALKGANTLNGGGEGGQSEQTHEQVSANAHALAL
EAQLQATQTERAYFQALLEEKEDVIVRLQKRLEKQPMRNVMPTPPPSVAP
KKNKTQPQQSHVPAGASRQQQHPQDGGDSSCSTRVEGPVAGGGGGEEGAP
RRGFRASNLRKSGTTALSSSSSGGNGSNSLDDDAIVGALQGQSEDSNNKM
VGYESGSGSSTSPFPSLLPSSSLLPSSSLLPSNPIVPPPPSADPRAGVTT
TTATSSATTITHFPLLSSSVIGRLTDMLYDEMQLQKFNHPRQTIQSCLEC
ILTLFDIPSTVQELSELCLVFEQQSEAHARVEEVLENLEAGDGMSKPELD
CLKRIFDLVLPPLPEEERGKEEGGIRERGRIEEGVRVEGGWREGWREEWG
EGEEGEGISCES*
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mRNA from alignment at chr2:1403958..1405684-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05260.1 ID=NO02G05260.1|Name=NO02G05260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1727bp|location=Sequence derived from alignment at chr2:1403958..1405684- (Nannochloropsis oceanica)
ACAGGAGCGCGTGGTGACAATGGCGGGCTACCAACAGCAGCCCCACCATC
TCATCAACGGCACACCACCCAACCCCGGAGGAGGAAACCCTCCAGGGGGG
GAGCAGACCGAGGCGATGCTATCTGAGCTAGGACAGATGCAAAACCAGCT
CGACCAAAACGTGCACGTGGAGAACGTACAGCTGCGTGGCCAGATCCAAG
CCTTAATGAACGAGGTCGCAGCTCTCAAAGGCGCGAACACCCTGAATGGT
GGGGGGGAAGGCGGGCAATCAGAACAAACACACGAGCAAGTTTCCGCCAA
CGCCCACGCTCTAGCCCTTGAAGCCCAGCTACAAGCTACACAGACAGAGC
GGGCCTACTTTCAAGCCTTGCTGGAGGAAAAGGAAGACGTGATAGTCCGC
TTGCAAAAACGCTTGGAGAAGCAACCCATGCGAAATGTCATGCCTACTCC
TCCCCCCTCCGTGGCCCCCAAAAAGAACAAGACTCAACCACAGCAATCAC
ACGTCCCCGCCGGTGCTTCGCGCCAGCAACAGCACCCTCAAGATGGCGGA
GACAGCAGTTGTTCTACACGTGTGGAAGGGCCAGTGGCAGGAGGAGGGGG
AGGGGAGGAGGGCGCTCCTCGTCGCGGGTTCCGAGCAAGCAATTTGCGGA
AGAGTGGGACAACCGCCTTGAGCAGCAGCAGCAGTGGTGGAAATGGAAGC
AACAGCCTGGATGACGATGCCATCGTAGGAGCCTTGCAAGGGCAGAGTGA
AGATAGCAACAACAAGATGGTTGGGTACGAGAGCGGGAGCGGAAGCAGCA
CGAGCCCGTTTCCCTCCCTCCTTCCCTCCTCCTCCCTCCTTCCCTCCTCC
TCCCTCCTCCCTTCCAACCCGATCGTTCCTCCTCCTCCTTCTGCAGACCC
CCGCGCAGGCGTCACAACCACTACTGCTACCAGCTCTGCCACCACCATCA
CCCACTTCCCTCTCCTTTCCTCCTCGGTTATCGGCCGTCTCACGGACATG
CTCTATGACGAAATGCAGCTCCAAAAATTCAACCATCCCCGCCAAACGAT
ACAGTCGTGCCTGGAGTGCATCCTCACCCTTTTCGACATTCCGTCTACCG
TTCAGGAATTAAGTGAATTGTGTCTTGTTTTTGAGCAACAGTCCGAGGCC
CATGCCCGCGTGGAGGAGGTGCTCGAGAATTTGGAGGCGGGCGATGGGAT
GAGTAAGCCCGAGTTGGACTGTTTGAAACGGATTTTTGATTTGGTCTTGC
CACCTTTGCCCGAGGAGGAGAGAGGGAAGGAGGAGGGAGGAATTAGGGAA
AGGGGAAGGATAGAGGAAGGGGTAAGGGTGGAGGGGGGGTGGAGGGAGGG
GTGGAGGGAGGAGTGGGGGGAGGGGGAAGAAGGGGAAGGGATTTCATGCG
AGAGCTGATCAGTGCTTTGAACAAATTTCATGGGATGAAAAACAAGAAAC
CGGACCTGGCGTACATGTGTCAAAGGGCCGGTGTGGAGCAGCAGGGTATC
CATACAGTTGAGGCGCTGAGGGAGGGGTTGAAGGACCATCTCGCACTGCA
GGCGGCGTTTATAAATGTTTGTGCCACAATGCCCCCGGGACAACAGTCCT
GTAACCGTCGGTACGTTGCAAGGAAGCTGTTCGAATTTTGTGGCTTGGAT
GCGAGTGTACTGGTGGCCAAAAAGGGAACACAGGGGCGCAAGCCTCCGAT
AAGGAAGAGGGATGGGGTAGGGGGGGG
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Coding sequence (CDS) from alignment at chr2:1403958..1405684-

>NO02G05260.1 ID=NO02G05260.1|Name=NO02G05260.1|organism=Nannochloropsis oceanica|type=CDS|length=1389bp|location=Sequence derived from alignment at chr2:1403958..1405684- (Nannochloropsis oceanica)
ATGGCGGGCTACCAACAGCAGCCCCACCATCTCATCAACGGCACACCACC
CAACCCCGGAGGAGGAAACCCTCCAGGGGGGGAGCAGACCGAGGCGATGC
TATCTGAGCTAGGACAGATGCAAAACCAGCTCGACCAAAACGTGCACGTG
GAGAACGTACAGCTGCGTGGCCAGATCCAAGCCTTAATGAACGAGGTCGC
AGCTCTCAAAGGCGCGAACACCCTGAATGGTGGGGGGGAAGGCGGGCAAT
CAGAACAAACACACGAGCAAGTTTCCGCCAACGCCCACGCTCTAGCCCTT
GAAGCCCAGCTACAAGCTACACAGACAGAGCGGGCCTACTTTCAAGCCTT
GCTGGAGGAAAAGGAAGACGTGATAGTCCGCTTGCAAAAACGCTTGGAGA
AGCAACCCATGCGAAATGTCATGCCTACTCCTCCCCCCTCCGTGGCCCCC
AAAAAGAACAAGACTCAACCACAGCAATCACACGTCCCCGCCGGTGCTTC
GCGCCAGCAACAGCACCCTCAAGATGGCGGAGACAGCAGTTGTTCTACAC
GTGTGGAAGGGCCAGTGGCAGGAGGAGGGGGAGGGGAGGAGGGCGCTCCT
CGTCGCGGGTTCCGAGCAAGCAATTTGCGGAAGAGTGGGACAACCGCCTT
GAGCAGCAGCAGCAGTGGTGGAAATGGAAGCAACAGCCTGGATGACGATG
CCATCGTAGGAGCCTTGCAAGGGCAGAGTGAAGATAGCAACAACAAGATG
GTTGGGTACGAGAGCGGGAGCGGAAGCAGCACGAGCCCGTTTCCCTCCCT
CCTTCCCTCCTCCTCCCTCCTTCCCTCCTCCTCCCTCCTCCCTTCCAACC
CGATCGTTCCTCCTCCTCCTTCTGCAGACCCCCGCGCAGGCGTCACAACC
ACTACTGCTACCAGCTCTGCCACCACCATCACCCACTTCCCTCTCCTTTC
CTCCTCGGTTATCGGCCGTCTCACGGACATGCTCTATGACGAAATGCAGC
TCCAAAAATTCAACCATCCCCGCCAAACGATACAGTCGTGCCTGGAGTGC
ATCCTCACCCTTTTCGACATTCCGTCTACCGTTCAGGAATTAAGTGAATT
GTGTCTTGTTTTTGAGCAACAGTCCGAGGCCCATGCCCGCGTGGAGGAGG
TGCTCGAGAATTTGGAGGCGGGCGATGGGATGAGTAAGCCCGAGTTGGAC
TGTTTGAAACGGATTTTTGATTTGGTCTTGCCACCTTTGCCCGAGGAGGA
GAGAGGGAAGGAGGAGGGAGGAATTAGGGAAAGGGGAAGGATAGAGGAAG
GGGTAAGGGTGGAGGGGGGGTGGAGGGAGGGGTGGAGGGAGGAGTGGGGG
GAGGGGGAAGAAGGGGAAGGGATTTCATGCGAGAGCTGA
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Synonyms
Publications