NO02G05080.1, NO02G05080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05080.1
Unique NameNO02G05080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length962
Alignment locationchr2:1363502..1364463 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1363502..1364463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO02G05080.1 vs.
Match: EWM30167.1 (hypothetical protein Naga_100096g15 [Nannochloropsis gaditana])

HSP 1 Score: 327.8 bits (839), Expect = 3.300e-86
Identity = 171/282 (60.64%), Postives = 206/282 (73.05%), Query Frame = 0 
Query:    1 MGTAFGSPASSSLSSSAFSSSNISSTSSSPP--------SSTARRAVSLPRHNPSWAFQTAVSETLQRRGYIEALWDALVDGDKATHRPPIPCEVLPLILHYAASFKEVALSKEEHIQLSNGDYLYLTHPIPFELHGYEVVGAQILVTSHDQGWSSEFPHLKGTYIGSYTWGEAVVVESGAPTGVTEGGSQRVVLAQEVYRNLHAVKTWQTHEKSFVVSECVGDGVGVGCGGCMEERRQSDGGHIVAALRPGRALTLKLHAMYAGWVNHTRWAQITVQYLKV 275
            MG    S   ++ S    S   +SS+++S P        SS  RR + L RHNP WAFQTAVSE L+RRGYI+ALWDAL +GDK++HR P+PCEVLPLILH+A S+KE+ LSKEE +++SNG++ YLTHPIP  LHG++VVGA+I VTSHDQGWSSE PHL+GTYIGSYTWGEA+VVES +PT  TE G  RVV+  EVYRNLHAVK WQTHEK+FV       G G       EE  QSDGG +++ALRPGRAL L LHA Y GW N T+ A IT+QYL+V
Sbjct:    1 MGAYISSSVQANSSRPQSSRPALSSSNNSGPAYRGGHLHSSHGRRPMRLSRHNP-WAFQTAVSEALKRRGYIDALWDALSNGDKSSHRAPVPCEVLPLILHFAGSYKEMTLSKEEPVRISNGNFAYLTHPIPTNLHGHQVVGARISVTSHDQGWSSEHPHLRGTYIGSYTWGEALVVESSSPTSTTEQGIPRVVVGTEVYRNLHAVKIWQTHEKTFVGPLASPRGKGQVDEESKEEGVQSDGGDLISALRPGRALALHLHAQYPGWTNFTQGAHITIQYLRV 281
The following BLAST results are available for this feature:
BLAST of NO02G05080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30167.13.300e-8660.64hypothetical protein Naga_100096g15 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05080NO02G05080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05080.1NO02G05080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05080.1.cds1NO02G05080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05080.1 ID=NO02G05080.1|Name=NO02G05080.1|organism=Nannochloropsis oceanica|type=mRNA|length=962bp
TGTTTCCCCTCGCTTCTCCAACTCCTCCCTCACCCCTTTCCCCCAATCTT
ACACAGGCGCTTATGGGTACCGCGTTTGGCTCCCCTGCGTCCTCCTCCCT
CTCCTCATCCGCTTTTTCGTCTTCCAACATTTCCTCCACTTCCTCCTCCC
CGCCGTCCTCTACCGCACGGCGAGCTGTCAGCCTTCCTCGCCACAACCCG
TCCTGGGCCTTTCAAACAGCCGTCTCGGAAACTTTACAACGCCGAGGCTA
CATCGAAGCCCTTTGGGACGCCCTCGTCGATGGCGACAAAGCTACTCATC
GCCCTCCCATTCCTTGTGAAGTCCTGCCTCTTATTTTGCACTACGCCGCG
TCGTTCAAAGAAGTGGCCTTGAGCAAAGAAGAGCATATCCAACTGTCCAA
TGGCGACTATCTCTATTTGACGCACCCCATCCCTTTCGAGCTGCACGGGT
ATGAGGTGGTGGGAGCTCAGATTTTAGTGACGTCCCACGATCAGGGTTGG
AGCAGTGAATTTCCTCATTTGAAGGGGACGTATATAGGGAGCTATACATG
GGGGGAGGCGGTGGTGGTGGAGAGTGGGGCGCCAACGGGTGTCACGGAGG
GGGGATCACAGCGGGTGGTGTTGGCGCAAGAGGTTTATCGGAATTTACAT
GCTGTCAAGACGTGGCAGACGCACGAGAAGAGCTTCGTGGTTTCAGAATG
TGTTGGGGACGGGGTTGGCGTTGGGTGTGGGGGATGCATGGAGGAGAGGC
GGCAGTCGGATGGGGGTCATATAGTGGCTGCTTTGAGGCCAGGGCGGGCC
TTGACCTTGAAGTTACATGCTATGTATGCTGGGTGGGTCAACCATACCCG
GTGGGCGCAGATCACGGTGCAGTACTTGAAGGTGGCTTGAGGGGGGGGGA
GGTAGGGACGTGTGACAATATGAGAAGTGGGATGATGAGGAAGAAGAGAA
AAGGTGAGAGGG
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protein sequence of NO02G05080.1

>NO02G05080.1-protein ID=NO02G05080.1-protein|Name=NO02G05080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MGTAFGSPASSSLSSSAFSSSNISSTSSSPPSSTARRAVSLPRHNPSWAF
QTAVSETLQRRGYIEALWDALVDGDKATHRPPIPCEVLPLILHYAASFKE
VALSKEEHIQLSNGDYLYLTHPIPFELHGYEVVGAQILVTSHDQGWSSEF
PHLKGTYIGSYTWGEAVVVESGAPTGVTEGGSQRVVLAQEVYRNLHAVKT
WQTHEKSFVVSECVGDGVGVGCGGCMEERRQSDGGHIVAALRPGRALTLK
LHAMYAGWVNHTRWAQITVQYLKVA*
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mRNA from alignment at chr2:1363502..1364463-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05080.1 ID=NO02G05080.1|Name=NO02G05080.1|organism=Nannochloropsis oceanica|type=mRNA|length=962bp|location=Sequence derived from alignment at chr2:1363502..1364463- (Nannochloropsis oceanica)
TGTTTCCCCTCGCTTCTCCAACTCCTCCCTCACCCCTTTCCCCCAATCTT
ACACAGGCGCTTATGGGTACCGCGTTTGGCTCCCCTGCGTCCTCCTCCCT
CTCCTCATCCGCTTTTTCGTCTTCCAACATTTCCTCCACTTCCTCCTCCC
CGCCGTCCTCTACCGCACGGCGAGCTGTCAGCCTTCCTCGCCACAACCCG
TCCTGGGCCTTTCAAACAGCCGTCTCGGAAACTTTACAACGCCGAGGCTA
CATCGAAGCCCTTTGGGACGCCCTCGTCGATGGCGACAAAGCTACTCATC
GCCCTCCCATTCCTTGTGAAGTCCTGCCTCTTATTTTGCACTACGCCGCG
TCGTTCAAAGAAGTGGCCTTGAGCAAAGAAGAGCATATCCAACTGTCCAA
TGGCGACTATCTCTATTTGACGCACCCCATCCCTTTCGAGCTGCACGGGT
ATGAGGTGGTGGGAGCTCAGATTTTAGTGACGTCCCACGATCAGGGTTGG
AGCAGTGAATTTCCTCATTTGAAGGGGACGTATATAGGGAGCTATACATG
GGGGGAGGCGGTGGTGGTGGAGAGTGGGGCGCCAACGGGTGTCACGGAGG
GGGGATCACAGCGGGTGGTGTTGGCGCAAGAGGTTTATCGGAATTTACAT
GCTGTCAAGACGTGGCAGACGCACGAGAAGAGCTTCGTGGTTTCAGAATG
TGTTGGGGACGGGGTTGGCGTTGGGTGTGGGGGATGCATGGAGGAGAGGC
GGCAGTCGGATGGGGGTCATATAGTGGCTGCTTTGAGGCCAGGGCGGGCC
TTGACCTTGAAGTTACATGCTATGTATGCTGGGTGGGTCAACCATACCCG
GTGGGCGCAGATCACGGTGCAGTACTTGAAGGTGGCTTGAGGGGGGGGGA
GGTAGGGACGTGTGACAATATGAGAAGTGGGATGATGAGGAAGAAGAGAA
AAGGTGAGAGGG
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Coding sequence (CDS) from alignment at chr2:1363502..1364463-

>NO02G05080.1 ID=NO02G05080.1|Name=NO02G05080.1|organism=Nannochloropsis oceanica|type=CDS|length=828bp|location=Sequence derived from alignment at chr2:1363502..1364463- (Nannochloropsis oceanica)
ATGGGTACCGCGTTTGGCTCCCCTGCGTCCTCCTCCCTCTCCTCATCCGC
TTTTTCGTCTTCCAACATTTCCTCCACTTCCTCCTCCCCGCCGTCCTCTA
CCGCACGGCGAGCTGTCAGCCTTCCTCGCCACAACCCGTCCTGGGCCTTT
CAAACAGCCGTCTCGGAAACTTTACAACGCCGAGGCTACATCGAAGCCCT
TTGGGACGCCCTCGTCGATGGCGACAAAGCTACTCATCGCCCTCCCATTC
CTTGTGAAGTCCTGCCTCTTATTTTGCACTACGCCGCGTCGTTCAAAGAA
GTGGCCTTGAGCAAAGAAGAGCATATCCAACTGTCCAATGGCGACTATCT
CTATTTGACGCACCCCATCCCTTTCGAGCTGCACGGGTATGAGGTGGTGG
GAGCTCAGATTTTAGTGACGTCCCACGATCAGGGTTGGAGCAGTGAATTT
CCTCATTTGAAGGGGACGTATATAGGGAGCTATACATGGGGGGAGGCGGT
GGTGGTGGAGAGTGGGGCGCCAACGGGTGTCACGGAGGGGGGATCACAGC
GGGTGGTGTTGGCGCAAGAGGTTTATCGGAATTTACATGCTGTCAAGACG
TGGCAGACGCACGAGAAGAGCTTCGTGGTTTCAGAATGTGTTGGGGACGG
GGTTGGCGTTGGGTGTGGGGGATGCATGGAGGAGAGGCGGCAGTCGGATG
GGGGTCATATAGTGGCTGCTTTGAGGCCAGGGCGGGCCTTGACCTTGAAG
TTACATGCTATGTATGCTGGGTGGGTCAACCATACCCGGTGGGCGCAGAT
CACGGTGCAGTACTTGAAGGTGGCTTGA
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Synonyms
Publications