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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:969824..972689 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G03630.1 vs.
Match: EWM30252.1 (rna-binding protein 25 [Nannochloropsis gaditana]) HSP 1 Score: 157.9 bits (398), Expect = 1.300e-34 Identity = 147/402 (36.57%), Postives = 198/402 (49.25%), Query Frame = 0
Query: 122 PCAAPPPLSLPKNLPSLQNGQVRNTLASSNNTLAAVAAVAGPISITTASVGAGAGAGAGAEAGEKRANTLAGLYTSSSVDRKGKVGSEGGIVAPQPSSSAP----SRMQKDEPMTVFVGKLPPNVPDQFIFSLLEQCGRVLEWKRVEGKNFGFCLYARPAQARRCVNLMNGFKVDYQEIVTKVGKKEVAILAELEVSEEEAAQDKVAKERLQYVIQRRNLGARQGLAREEDTAATAGGLASAAELGVVTGGGGAAA--ATGEAEVGREEHNSRTGASLMVERMTLAAGLPPSPETVREGRAQNTVVLSEVERFRMVEAQRDRKKEEERLRDLRRRVEEAERIERRQKEREAREEEAVAAVSAKEAAALEREKEIEKERERRESSRHIRASHSRSRSQERGHC 518
P APPP SLPKN+ S Q R T A T S A A A A E + A + D + G + A + SS+AP S +D+PMTVFVG+LPP VPD I++LLEQCG++LEWKR GK+FGFC YA+P+ ARRC+ LMNG K+D Q ++ K+ KE+A L EL VSE++AAQDK+ KERL +I++++L G +A A E G G G+ A TG G + +S +G L G E++RFR EA+R R +E+ RL +LR RVEE ER+E RQK+R E + RE +++ E +R I S +R +E C
Sbjct: 6 PRGAPPPFSLPKNIVSSQTHLSRETTA-------------------TISPPADKAASALMRASEASLSDHAADSLRHNCDI---IAENGRVHATECSSTAPVLVSSHSGEDDPMTVFVGRLPPTVPDHVIYTLLEQCGKILEWKRAVGKSFGFCQYAQPSYARRCLELMNGVKLDCQPVLVKLDNKELARLVELAVSEQDAAQDKITKERLTSIIEQQHLRVHVGEGEVRASAKRQRCKHGAEEEGGCGSGCGSRAELLTG----GWDPSSSLSGMQKNTAHDLLVLG--------------------ELDRFRTTEAERGRLQEKHRLLELRHRVEEQERLEIRQKKRRNETAEFIL-----------REAKMKVPHSAAEETREISKSKARDGCEEASGC 350
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G03630.1 ID=NO02G03630.1|Name=NO02G03630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2694bp TGGGCCAGGTCGAAGGTGGGTGAAAAAGTATGCACTGCTCGATGACGATG ATGGTGAATTCAAAGTGGGTGTTACAAGGGGACAGCTACATAACTCACGC AAGGCAACATCTGCAGAGCACAAAAAGCATAGCTGCACGACGCGCTTGTT GTTTCCCTCCTTACACTGCCGTGATCCCTTCCTTCTTCACACAGAGCCAA CACAGCCGCAGGCTGCACAATCACCCCCCTCCTTCCTCTCTTACACCAGC CCATCTCCTCTCATGTCGACCACGCCTCCTCCTCCGCTTCCGTCTCCGCC TCCGCACCCACCTAACGAGGATGAGGCAACCGAGCTTCCCTCCTTGGTAC CGGAAGCAACCCTTGCAAGAGAGCCGCCATCGTTGGCCCCGCCACCTCCT CCCCTTCCTCCTTCAGCTCCTCCATCCCATTATCTGCCGCAGCTCCCTCA TCCTTCCCATAATCCTGCGTCCTCGATCAATTATGTACAAGCCCGCCCTG CAACTGCCATACCAATACCTCTGCCCCCTCTTATTATGCCGTACATGGAC ATGGCGCATGCCGCAGCCCCTTATCCACACGTCGGCATTTCCCTCCCACC CCCTGTCTTCATGCCTAGTGGTATGCCCTGCGCCGCCCCTCCCCCCTTGT CGTTGCCCAAAAACCTCCCCTCCTTACAAAACGGCCAAGTACGCAACACA CTAGCATCGAGTAATAACACGCTTGCAGCAGTCGCGGCCGTCGCTGGACC CATCTCGATCACCACTGCTTCAGTCGGAGCAGGAGCAGGAGCAGGAGCAG GAGCAGAAGCAGGAGAAAAAAGGGCGAACACCCTAGCTGGCCTCTATACG AGCAGCAGCGTTGACAGAAAGGGGAAAGTAGGATCAGAAGGTGGAATAGT AGCGCCGCAGCCTTCGTCGTCGGCCCCATCGCGAATGCAAAAGGATGAAC CGATGACGGTGTTTGTGGGCAAGCTGCCTCCCAATGTCCCCGATCAATTT ATTTTTTCCCTGCTCGAACAATGCGGCCGGGTCCTAGAATGGAAGCGTGT GGAGGGGAAGAACTTTGGATTTTGTTTGTACGCACGACCGGCACAAGCTC GACGGTGTGTAAATTTGATGAACGGTTTCAAGGTCGACTACCAGGAAATA GTGACAAAAGTTGGAAAAAAAGAGGTTGCAATTCTGGCCGAGCTGGAGGT ATCGGAGGAAGAAGCGGCCCAGGATAAGGTTGCGAAGGAACGGTTGCAGT ATGTGATACAAAGGAGGAATTTGGGGGCGCGCCAGGGTCTTGCACGGGAG GAGGACACCGCTGCAACTGCTGGGGGCCTAGCCTCAGCAGCAGAATTAGG AGTAGTAACAGGAGGAGGAGGAGCAGCAGCAGCAACGGGAGAAGCGGAGG TGGGAAGGGAAGAGCACAATAGTAGGACGGGGGCATCATTGATGGTGGAG AGGATGACGCTGGCGGCAGGTTTGCCTCCGTCGCCCGAGACTGTGAGAGA GGGACGGGCGCAAAACACGGTAGTCTTGAGTGAGGTCGAGAGGTTCCGAA TGGTGGAAGCGCAGCGAGATCGAAAAAAGGAAGAGGAGCGATTAAGAGAT CTCAGGAGGAGGGTTGAGGAGGCAGAGAGGATTGAGCGGCGACAGAAAGA GAGGGAGGCACGCGAGGAGGAGGCTGTGGCAGCGGTGTCTGCGAAGGAAG CTGCAGCGTTGGAGAGGGAGAAGGAGATTGAGAAGGAGCGGGAGAGGAGA GAAAGCAGCAGGCATATACGAGCGAGTCATAGTCGAAGTAGAAGTCAGGA ACGTGGTCATTGTCGTCGAAGGAGCAAGGAAGACCGCAATGGCCGCAGCA GAAGTAGCAGCAGCAGTAGCAGCGGTTCATCCTCGCGCTCACGAGAGCGT TCTAAGCGGGGTCGGTCTAGGGATGAGGAGCGGGGGGAGGGATTCAAGGA GGAAAATGAAGAGAAAGAGGACCACAGACGCAGCAACAGCAAGAAGCCGG CGGTTGATGTTAGTGCCGATGGTGATTGTTCGTCTGCTGCCGGCACCATG TCGACCATTGCATCGCGGCCTCTTCAAGTGAAAAGCCGTGGGAGTTGGAC GATTGACCTGCCCGCCAAGTCCCGCGGGGCTGGCAATATTGGTAAGGCGA AGGTCAGTAGCCGTAGCCGGGTGGCGACCTCGGTATTTCAGGCTGGGTAC GAGGACGAGGAAGAGAGAGGGACGAAATTGAGGGTGCCCGTCCCCCTTGA CTACGATCACGACGACAGGCACCCCGAGCATTCCACCTCTACCGAGAACA CCTCAAAGGGTGGCCCTGCTCCGATATCCGGGATGCTTTCTGAACGCCAA AAGCGGCTGGTGAGAGAGATTCCACAGGACAAGGATGCTCTGTTTGACTA CCCCGTGGACTGGGCTACTGTGGATGCCCAGAACCTGGTGCCGGTTCGGC TTCGGGCCTGGGTGGTCAAGAAGATCAAGGAGCTGCTCGGAGAGGAAGAA CCCACGCTTATTGATTATATTTGCTCCAAACTCCTGACTCATTGTCGACC TGATGACCTCCTTGCGGAGCTGCGGTTGGTGCTTGAGGATGATGCGGACA TCTTCACTCAAAAACTCTGGCGGATCATGATTTACTATACCATTGAAAGC CGGAAGGATTAACATACGAAAAAGAAACAAAAGCTATGAAGGAA back to topprotein sequence of NO02G03630.1 >NO02G03630.1-protein ID=NO02G03630.1-protein|Name=NO02G03630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=800bp MSTTPPPPLPSPPPHPPNEDEATELPSLVPEATLAREPPSLAPPPPPLPP SAPPSHYLPQLPHPSHNPASSINYVQARPATAIPIPLPPLIMPYMDMAHA AAPYPHVGISLPPPVFMPSGMPCAAPPPLSLPKNLPSLQNGQVRNTLASS NNTLAAVAAVAGPISITTASVGAGAGAGAGAEAGEKRANTLAGLYTSSSV DRKGKVGSEGGIVAPQPSSSAPSRMQKDEPMTVFVGKLPPNVPDQFIFSL LEQCGRVLEWKRVEGKNFGFCLYARPAQARRCVNLMNGFKVDYQEIVTKV GKKEVAILAELEVSEEEAAQDKVAKERLQYVIQRRNLGARQGLAREEDTA ATAGGLASAAELGVVTGGGGAAAATGEAEVGREEHNSRTGASLMVERMTL AAGLPPSPETVREGRAQNTVVLSEVERFRMVEAQRDRKKEEERLRDLRRR VEEAERIERRQKEREAREEEAVAAVSAKEAAALEREKEIEKERERRESSR HIRASHSRSRSQERGHCRRRSKEDRNGRSRSSSSSSSGSSSRSRERSKRG RSRDEERGEGFKEENEEKEDHRRSNSKKPAVDVSADGDCSSAAGTMSTIA SRPLQVKSRGSWTIDLPAKSRGAGNIGKAKVSSRSRVATSVFQAGYEDEE ERGTKLRVPVPLDYDHDDRHPEHSTSTENTSKGGPAPISGMLSERQKRLV REIPQDKDALFDYPVDWATVDAQNLVPVRLRAWVVKKIKELLGEEEPTLI DYICSKLLTHCRPDDLLAELRLVLEDDADIFTQKLWRIMIYYTIESRKD* back to topmRNA from alignment at chr2:969824..972689- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G03630.1 ID=NO02G03630.1|Name=NO02G03630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2866bp|location=Sequence derived from alignment at chr2:969824..972689- (Nannochloropsis oceanica) TGGGCCAGGTCGAAGGTGGGTGAAAAAGTATGCACTGCTCGATGACGATG
ATGGTGAATTCAAAGTGGGTGTTACAAGGGGACAGCTACATAACTCACGC
AAGGCAACATCTGCAGAGCACAAAAAGCATAGCTGCACGACGCGCTTGTT
GTTTCCCTCCTTACACTGCCGTGATCCCTTCCTTCTTCACACAGAGCCAA
CACAGCCGCAGGCTGCACAATCACCCCCCTCCTTCCTCTCTTACACCAGC
CCATCTCCTCTCATGTCGACCACGCCTCCTCCTCCGCTTCCGTCTCCGCC
TCCGCACCCACCTAACGAGGATGAGGCAACCGAGCTTCCCTCCTTGGTAC
CGGAAGCAACCCTTGCAAGAGAGCCGCCATCGTTGGCCCCGCCACCTCCT
CCCCTTCCTCCTTCAGCTCCTCCATCCCATTATCTGCCGCAGCTCCCTCA
TCCTTCCCATAATCCTGCGTCCTCGATCAATTATGTACAAGCCCGCCCTG
CAACTGCCATACCAATACCTCTGCCCCCTCTTATTATGCCGTACATGGAC
ATGGCGCATGCCGGTAAGTTTTCCTGCCTTCGGTGATATACTAGGTCTCG
ATTCCCATAAATTCAAAACCCTCCATGACAACCTTTCTTCATCCGTTAAT
GCAGCCTTGCCTCTTTTATATCCCCATCCCCTGCCATCACGGACCAACCA
AACCTTTCATTTCTCCACACATCCCACAAACATAGCAGCCCCTTATCCAC
ACGTCGGCATTTCCCTCCCACCCCCTGTCTTCATGCCTAGTGGTATGCCC
TGCGCCGCCCCTCCCCCCTTGTCGTTGCCCAAAAACCTCCCCTCCTTACA
AAACGGCCAAGTACGCAACACACTAGCATCGAGTAATAACACGCTTGCAG
CAGTCGCGGCCGTCGCTGGACCCATCTCGATCACCACTGCTTCAGTCGGA
GCAGGAGCAGGAGCAGGAGCAGGAGCAGAAGCAGGAGAAAAAAGGGCGAA
CACCCTAGCTGGCCTCTATACGAGCAGCAGCGTTGACAGAAAGGGGAAAG
TAGGATCAGAAGGTGGAATAGTAGCGCCGCAGCCTTCGTCGTCGGCCCCA
TCGCGAATGCAAAAGGATGAACCGATGACGGTGTTTGTGGGCAAGCTGCC
TCCCAATGTCCCCGATCAATTTATTTTTTCCCTGCTCGAACAATGCGGCC
GGGTCCTAGAATGGAAGCGTGTGGAGGGGAAGAACTTTGGATTTTGTTTG
TACGCACGACCGGCACAAGCTCGACGGTGTGTAAATTTGATGAACGGTTT
CAAGGTCGACTACCAGGAAATAGTGACAAAAGTTGGAAAAAAAGAGGTTG
CAATTCTGGCCGAGCTGGAGGTATCGGAGGAAGAAGCGGCCCAGGATAAG
GTTGCGAAGGAACGGTTGCAGTATGTGATACAAAGGAGGAATTTGGGGGC
GCGCCAGGGTCTTGCACGGGAGGAGGACACCGCTGCAACTGCTGGGGGCC
TAGCCTCAGCAGCAGAATTAGGAGTAGTAACAGGAGGAGGAGGAGCAGCA
GCAGCAACGGGAGAAGCGGAGGTGGGAAGGGAAGAGCACAATAGTAGGAC
GGGGGCATCATTGATGGTGGAGAGGATGACGCTGGCGGCAGGTTTGCCTC
CGTCGCCCGAGACTGTGAGAGAGGGACGGGCGCAAAACACGGTAGTCTTG
AGTGAGGTCGAGAGGTTCCGAATGGTGGAAGCGCAGCGAGATCGAAAAAA
GGAAGAGGAGCGATTAAGAGATCTCAGGAGGAGGGTTGAGGAGGCAGAGA
GGATTGAGCGGCGACAGAAAGAGAGGGAGGCACGCGAGGAGGAGGCTGTG
GCAGCGGTGTCTGCGAAGGAAGCTGCAGCGTTGGAGAGGGAGAAGGAGAT
TGAGAAGGAGCGGGAGAGGAGAGAAAGCAGCAGGCATATACGAGCGAGTC
ATAGTCGAAGTAGAAGTCAGGAACGTGGTCATTGTCGTCGAAGGAGCAAG
GAAGACCGCAATGGCCGCAGCAGAAGTAGCAGCAGCAGTAGCAGCGGTTC
ATCCTCGCGCTCACGAGAGCGTTCTAAGCGGGGTCGGTCTAGGGATGAGG
AGCGGGGGGAGGGATTCAAGGAGGAAAATGAAGAGAAAGAGGACCACAGA
CGCAGCAACAGCAAGAAGCCGGCGGTTGATGTTAGTGCCGATGGTGATTG
TTCGTCTGCTGCCGGCACCATGTCGACCATTGCATCGCGGCCTCTTCAAG
TGAAAAGCCGTGGGAGTTGGACGATTGACCTGCCCGCCAAGTCCCGCGGG
GCTGGCAATATTGGTAAGGCGAAGGTCAGTAGCCGTAGCCGGGTGGCGAC
CTCGGTATTTCAGGCTGGGTACGAGGACGAGGAAGAGAGAGGGACGAAAT
TGAGGGTGCCCGTCCCCCTTGACTACGATCACGACGACAGGCACCCCGAG
CATTCCACCTCTACCGAGAACACCTCAAAGGGTGGCCCTGCTCCGATATC
CGGGATGCTTTCTGAACGCCAAAAGCGGCTGGTGAGAGAGATTCCACAGG
ACAAGGATGCTCTGTTTGACTACCCCGTGGACTGGGCTACTGTGGATGCC
CAGAACCTGGTGCCGGTTCGGCTTCGGGCCTGGGTGGTCAAGAAGATCAA
GGAGCTGCTCGGAGAGGAAGAACCCACGCTTATTGATTATATTTGCTCCA
AACTCCTGACTCATTGTCGACCTGATGACCTCCTTGCGGAGCTGCGGTTG
GTGCTTGAGGATGATGCGGACATCTTCACTCAAAAACTCTGGCGGATCAT
GATTTACTATACCATTGAAAGCCGGAAGGATTAACATACGAAAAAGAAAC
AAAAGCTATGAAGGAA back to topCoding sequence (CDS) from alignment at chr2:969824..972689- >NO02G03630.1 ID=NO02G03630.1|Name=NO02G03630.1|organism=Nannochloropsis oceanica|type=CDS|length=2400bp|location=Sequence derived from alignment at chr2:969824..972689- (Nannochloropsis oceanica) ATGTCGACCACGCCTCCTCCTCCGCTTCCGTCTCCGCCTCCGCACCCACC TAACGAGGATGAGGCAACCGAGCTTCCCTCCTTGGTACCGGAAGCAACCC TTGCAAGAGAGCCGCCATCGTTGGCCCCGCCACCTCCTCCCCTTCCTCCT TCAGCTCCTCCATCCCATTATCTGCCGCAGCTCCCTCATCCTTCCCATAA TCCTGCGTCCTCGATCAATTATGTACAAGCCCGCCCTGCAACTGCCATAC CAATACCTCTGCCCCCTCTTATTATGCCGTACATGGACATGGCGCATGCC GCAGCCCCTTATCCACACGTCGGCATTTCCCTCCCACCCCCTGTCTTCAT GCCTAGTGGTATGCCCTGCGCCGCCCCTCCCCCCTTGTCGTTGCCCAAAA ACCTCCCCTCCTTACAAAACGGCCAAGTACGCAACACACTAGCATCGAGT AATAACACGCTTGCAGCAGTCGCGGCCGTCGCTGGACCCATCTCGATCAC CACTGCTTCAGTCGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGAAGCAG GAGAAAAAAGGGCGAACACCCTAGCTGGCCTCTATACGAGCAGCAGCGTT GACAGAAAGGGGAAAGTAGGATCAGAAGGTGGAATAGTAGCGCCGCAGCC TTCGTCGTCGGCCCCATCGCGAATGCAAAAGGATGAACCGATGACGGTGT TTGTGGGCAAGCTGCCTCCCAATGTCCCCGATCAATTTATTTTTTCCCTG CTCGAACAATGCGGCCGGGTCCTAGAATGGAAGCGTGTGGAGGGGAAGAA CTTTGGATTTTGTTTGTACGCACGACCGGCACAAGCTCGACGGTGTGTAA ATTTGATGAACGGTTTCAAGGTCGACTACCAGGAAATAGTGACAAAAGTT GGAAAAAAAGAGGTTGCAATTCTGGCCGAGCTGGAGGTATCGGAGGAAGA AGCGGCCCAGGATAAGGTTGCGAAGGAACGGTTGCAGTATGTGATACAAA GGAGGAATTTGGGGGCGCGCCAGGGTCTTGCACGGGAGGAGGACACCGCT GCAACTGCTGGGGGCCTAGCCTCAGCAGCAGAATTAGGAGTAGTAACAGG AGGAGGAGGAGCAGCAGCAGCAACGGGAGAAGCGGAGGTGGGAAGGGAAG AGCACAATAGTAGGACGGGGGCATCATTGATGGTGGAGAGGATGACGCTG GCGGCAGGTTTGCCTCCGTCGCCCGAGACTGTGAGAGAGGGACGGGCGCA AAACACGGTAGTCTTGAGTGAGGTCGAGAGGTTCCGAATGGTGGAAGCGC AGCGAGATCGAAAAAAGGAAGAGGAGCGATTAAGAGATCTCAGGAGGAGG GTTGAGGAGGCAGAGAGGATTGAGCGGCGACAGAAAGAGAGGGAGGCACG CGAGGAGGAGGCTGTGGCAGCGGTGTCTGCGAAGGAAGCTGCAGCGTTGG AGAGGGAGAAGGAGATTGAGAAGGAGCGGGAGAGGAGAGAAAGCAGCAGG CATATACGAGCGAGTCATAGTCGAAGTAGAAGTCAGGAACGTGGTCATTG TCGTCGAAGGAGCAAGGAAGACCGCAATGGCCGCAGCAGAAGTAGCAGCA GCAGTAGCAGCGGTTCATCCTCGCGCTCACGAGAGCGTTCTAAGCGGGGT CGGTCTAGGGATGAGGAGCGGGGGGAGGGATTCAAGGAGGAAAATGAAGA GAAAGAGGACCACAGACGCAGCAACAGCAAGAAGCCGGCGGTTGATGTTA GTGCCGATGGTGATTGTTCGTCTGCTGCCGGCACCATGTCGACCATTGCA TCGCGGCCTCTTCAAGTGAAAAGCCGTGGGAGTTGGACGATTGACCTGCC CGCCAAGTCCCGCGGGGCTGGCAATATTGGTAAGGCGAAGGTCAGTAGCC GTAGCCGGGTGGCGACCTCGGTATTTCAGGCTGGGTACGAGGACGAGGAA GAGAGAGGGACGAAATTGAGGGTGCCCGTCCCCCTTGACTACGATCACGA CGACAGGCACCCCGAGCATTCCACCTCTACCGAGAACACCTCAAAGGGTG GCCCTGCTCCGATATCCGGGATGCTTTCTGAACGCCAAAAGCGGCTGGTG AGAGAGATTCCACAGGACAAGGATGCTCTGTTTGACTACCCCGTGGACTG GGCTACTGTGGATGCCCAGAACCTGGTGCCGGTTCGGCTTCGGGCCTGGG TGGTCAAGAAGATCAAGGAGCTGCTCGGAGAGGAAGAACCCACGCTTATT GATTATATTTGCTCCAAACTCCTGACTCATTGTCGACCTGATGACCTCCT TGCGGAGCTGCGGTTGGTGCTTGAGGATGATGCGGACATCTTCACTCAAA AACTCTGGCGGATCATGATTTACTATACCATTGAAAGCCGGAAGGATTAA back to top
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