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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:935420..936754 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G03480.1 vs.
Match: EWM30349.1 (small-conductance mechanosensitive channel [Nannochloropsis gaditana]) HSP 1 Score: 795.0 bits (2052), Expect = 1.200e-226 Identity = 394/437 (90.16%), Postives = 413/437 (94.51%), Query Frame = 0
Query: 1 MLFGWLFKPKAAPPVARKGPLTVLILDPVRRAIELFPNTKAVVEQVWNVLPLALRALINPRDLLLFLTTRLLYRKACRALHAFHQFLWKRGGILDEPRPYEDSVLGFMEPKLGTLTSFIGVTYIINVVLSLLVDIGWRVRADSGRLMASLLYIAYGAYFVNEVKKQYLTSWVPSLQEDRRRSYIIDRSSSVVLWILATFSCIECVSSFLKVPLSSTLAFGGFGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFETSFTLRYQDFETLPEIILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDLVPKELGQSLITGVVDYQNELEQVAAGQGGGG 438
M W PK A PV RKG L+ L+LDPVRRA+ELFPN+K V++QVW +LPLALRALINP DLLLF+TTRLLYRKACRALHAFH FLWKR GI+DEPR YEDSVLGFMEPKLGTLTSFIGVTY+INVVLSLL+DIGWRVRADS RLMASLLYIAYGAYFVNEVKK+YLT+WVPSLQEDRRRSYIIDRSSSVVLWILA FSCIEC+S+FLK+PLSSTLAFGG GGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFE SF+LR+QDFETLPE+ILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDLV KELGQSLITGVVDYQNELEQVAA GGGG
Sbjct: 143 MRIDWFSGPKIAEPVPRKGALSSLVLDPVRRAVELFPNSKGVIDQVWTMLPLALRALINPSDLLLFVTTRLLYRKACRALHAFHHFLWKRAGIMDEPRVYEDSVLGFMEPKLGTLTSFIGVTYVINVVLSLLIDIGWRVRADSARLMASLLYIAYGAYFVNEVKKEYLTTWVPSLQEDRRRSYIIDRSSSVVLWILAIFSCIECISAFLKIPLSSTLAFGGIGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFEASFSLRFQDFETLPEVILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDLVSKELGQSLITGVVDYQNELEQVAASGGGGG 579
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G03480.1 ID=NO02G03480.1|Name=NO02G03480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1335bp ATGCTCTTTGGCTGGCTTTTCAAGCCCAAGGCCGCCCCGCCCGTGGCACG GAAAGGACCGCTGACAGTGCTGATTCTCGATCCGGTGCGACGGGCAATTG AGCTTTTTCCAAACACTAAGGCTGTGGTTGAACAGGTTTGGAACGTCTTG CCTCTGGCGTTACGGGCACTGATCAATCCCCGTGACCTCTTATTGTTTCT CACCACTCGCCTATTGTACCGGAAGGCTTGCCGGGCTTTACATGCATTCC ACCAGTTCCTGTGGAAGCGCGGGGGGATTTTAGACGAGCCGCGTCCGTAC GAGGACTCAGTGCTGGGTTTCATGGAACCAAAACTCGGCACTCTCACCTC CTTCATTGGCGTCACCTACATCATCAATGTGGTACTTTCCTTGCTCGTCG ACATTGGCTGGCGCGTCCGGGCGGACTCTGGGCGGCTGATGGCCTCTCTA CTCTATATTGCATATGGCGCGTATTTTGTAAATGAAGTCAAGAAGCAGTA CCTCACCAGCTGGGTCCCCTCTCTCCAAGAAGACCGTCGTCGCTCTTACA TCATTGATCGGTCCTCTTCTGTCGTGCTCTGGATCTTGGCGACCTTCTCG TGCATTGAGTGTGTTTCCTCTTTTCTTAAGGTGCCCCTCTCCTCTACGCT TGCTTTTGGTGGATTCGGAGGGCTGGCGTTCGGGCTGGCGTCCAAGGACG TGGTCAGCAACTTCTTCGGGGGGGTCATGCTTTTGTTCACTGAGCCGTTC ACCCCGGGGGACATGGTTTCATTTACCACTCGCGGCACGCATTATGAAGG AAAAGTAGAGCGGGTGGGTTTCTACCAGACCCGGCTTCGAGGCAGGGATA CGCGACCGACGTATGTGCCTAACTCAGTGTTTGTCGATACGATGGTCACA AACATGGACAGAATCACGCACCGGAGGTTCGAAACATCCTTTACTCTACG CTATCAAGACTTTGAAACCTTGCCAGAAATCATCCTGGAGATTAAAAAGG CCTTGCGTGTTCTGCCAAAGGTGGATGTCCTTTCCCCCTTTCGTGTGCAT TTCACGCAATTCGGCTCCTACTGCCTCAGCCTTACCGCGTCCTGCTACTT TGCAACCAAGAGCTTGGACGAGTACCTCTACCTGCAACAGCTTGCCCTGA TGGAAATCACACGTGTAGTGACGGAGTGCGGCTGTCGCTTCGCCTACCCC ACCACGCATCTCGACCTGGTGCCCAAAGAGCTAGGGCAAAGCTTGATCAC TGGTGTGGTGGACTACCAAAACGAACTCGAGCAAGTAGCAGCCGGTCAAG GAGGGGGGGGGGGGCAGGAGGAAATAACTCAATGA back to topprotein sequence of NO02G03480.1 >NO02G03480.1-protein ID=NO02G03480.1-protein|Name=NO02G03480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp MLFGWLFKPKAAPPVARKGPLTVLILDPVRRAIELFPNTKAVVEQVWNVL PLALRALINPRDLLLFLTTRLLYRKACRALHAFHQFLWKRGGILDEPRPY EDSVLGFMEPKLGTLTSFIGVTYIINVVLSLLVDIGWRVRADSGRLMASL LYIAYGAYFVNEVKKQYLTSWVPSLQEDRRRSYIIDRSSSVVLWILATFS CIECVSSFLKVPLSSTLAFGGFGGLAFGLASKDVVSNFFGGVMLLFTEPF TPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVT NMDRITHRRFETSFTLRYQDFETLPEIILEIKKALRVLPKVDVLSPFRVH FTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYP TTHLDLVPKELGQSLITGVVDYQNELEQVAAGQGGGGGQEEITQ* back to topmRNA from alignment at chr2:935420..936754+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G03480.1 ID=NO02G03480.1|Name=NO02G03480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1335bp|location=Sequence derived from alignment at chr2:935420..936754+ (Nannochloropsis oceanica) ATGCTCTTTGGCTGGCTTTTCAAGCCCAAGGCCGCCCCGCCCGTGGCACG
GAAAGGACCGCTGACAGTGCTGATTCTCGATCCGGTGCGACGGGCAATTG
AGCTTTTTCCAAACACTAAGGCTGTGGTTGAACAGGTTTGGAACGTCTTG
CCTCTGGCGTTACGGGCACTGATCAATCCCCGTGACCTCTTATTGTTTCT
CACCACTCGCCTATTGTACCGGAAGGCTTGCCGGGCTTTACATGCATTCC
ACCAGTTCCTGTGGAAGCGCGGGGGGATTTTAGACGAGCCGCGTCCGTAC
GAGGACTCAGTGCTGGGTTTCATGGAACCAAAACTCGGCACTCTCACCTC
CTTCATTGGCGTCACCTACATCATCAATGTGGTACTTTCCTTGCTCGTCG
ACATTGGCTGGCGCGTCCGGGCGGACTCTGGGCGGCTGATGGCCTCTCTA
CTCTATATTGCATATGGCGCGTATTTTGTAAATGAAGTCAAGAAGCAGTA
CCTCACCAGCTGGGTCCCCTCTCTCCAAGAAGACCGTCGTCGCTCTTACA
TCATTGATCGGTCCTCTTCTGTCGTGCTCTGGATCTTGGCGACCTTCTCG
TGCATTGAGTGTGTTTCCTCTTTTCTTAAGGTGCCCCTCTCCTCTACGCT
TGCTTTTGGTGGATTCGGAGGGCTGGCGTTCGGGCTGGCGTCCAAGGACG
TGGTCAGCAACTTCTTCGGGGGGGTCATGCTTTTGTTCACTGAGCCGTTC
ACCCCGGGGGACATGGTTTCATTTACCACTCGCGGCACGCATTATGAAGG
AAAAGTAGAGCGGGTGGGTTTCTACCAGACCCGGCTTCGAGGCAGGGATA
CGCGACCGACGTATGTGCCTAACTCAGTGTTTGTCGATACGATGGTCACA
AACATGGACAGAATCACGCACCGGAGGTTCGAAACATCCTTTACTCTACG
CTATCAAGACTTTGAAACCTTGCCAGAAATCATCCTGGAGATTAAAAAGG
CCTTGCGTGTTCTGCCAAAGGTGGATGTCCTTTCCCCCTTTCGTGTGCAT
TTCACGCAATTCGGCTCCTACTGCCTCAGCCTTACCGCGTCCTGCTACTT
TGCAACCAAGAGCTTGGACGAGTACCTCTACCTGCAACAGCTTGCCCTGA
TGGAAATCACACGTGTAGTGACGGAGTGCGGCTGTCGCTTCGCCTACCCC
ACCACGCATCTCGACCTGGTGCCCAAAGAGCTAGGGCAAAGCTTGATCAC
TGGTGTGGTGGACTACCAAAACGAACTCGAGCAAGTAGCAGCCGGTCAAG
GAGGGGGGGGGGGGCAGGAGGAAATAACTCAATGA back to topCoding sequence (CDS) from alignment at chr2:935420..936754+ >NO02G03480.1 ID=NO02G03480.1|Name=NO02G03480.1|organism=Nannochloropsis oceanica|type=CDS|length=1335bp|location=Sequence derived from alignment at chr2:935420..936754+ (Nannochloropsis oceanica) ATGCTCTTTGGCTGGCTTTTCAAGCCCAAGGCCGCCCCGCCCGTGGCACG GAAAGGACCGCTGACAGTGCTGATTCTCGATCCGGTGCGACGGGCAATTG AGCTTTTTCCAAACACTAAGGCTGTGGTTGAACAGGTTTGGAACGTCTTG CCTCTGGCGTTACGGGCACTGATCAATCCCCGTGACCTCTTATTGTTTCT CACCACTCGCCTATTGTACCGGAAGGCTTGCCGGGCTTTACATGCATTCC ACCAGTTCCTGTGGAAGCGCGGGGGGATTTTAGACGAGCCGCGTCCGTAC GAGGACTCAGTGCTGGGTTTCATGGAACCAAAACTCGGCACTCTCACCTC CTTCATTGGCGTCACCTACATCATCAATGTGGTACTTTCCTTGCTCGTCG ACATTGGCTGGCGCGTCCGGGCGGACTCTGGGCGGCTGATGGCCTCTCTA CTCTATATTGCATATGGCGCGTATTTTGTAAATGAAGTCAAGAAGCAGTA CCTCACCAGCTGGGTCCCCTCTCTCCAAGAAGACCGTCGTCGCTCTTACA TCATTGATCGGTCCTCTTCTGTCGTGCTCTGGATCTTGGCGACCTTCTCG TGCATTGAGTGTGTTTCCTCTTTTCTTAAGGTGCCCCTCTCCTCTACGCT TGCTTTTGGTGGATTCGGAGGGCTGGCGTTCGGGCTGGCGTCCAAGGACG TGGTCAGCAACTTCTTCGGGGGGGTCATGCTTTTGTTCACTGAGCCGTTC ACCCCGGGGGACATGGTTTCATTTACCACTCGCGGCACGCATTATGAAGG AAAAGTAGAGCGGGTGGGTTTCTACCAGACCCGGCTTCGAGGCAGGGATA CGCGACCGACGTATGTGCCTAACTCAGTGTTTGTCGATACGATGGTCACA AACATGGACAGAATCACGCACCGGAGGTTCGAAACATCCTTTACTCTACG CTATCAAGACTTTGAAACCTTGCCAGAAATCATCCTGGAGATTAAAAAGG CCTTGCGTGTTCTGCCAAAGGTGGATGTCCTTTCCCCCTTTCGTGTGCAT TTCACGCAATTCGGCTCCTACTGCCTCAGCCTTACCGCGTCCTGCTACTT TGCAACCAAGAGCTTGGACGAGTACCTCTACCTGCAACAGCTTGCCCTGA TGGAAATCACACGTGTAGTGACGGAGTGCGGCTGTCGCTTCGCCTACCCC ACCACGCATCTCGACCTGGTGCCCAAAGAGCTAGGGCAAAGCTTGATCAC TGGTGTGGTGGACTACCAAAACGAACTCGAGCAAGTAGCAGCCGGTCAAG GAGGGGGGGGGGGGCAGGAGGAAATAACTCAATGA back to top
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