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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:793942..796274 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G02950.1 vs.
Match: XP_005853738.1 (mitochondrial-processing peptidase subunit beta [Nannochloropsis gaditana CCMP526]; EKU22619.1 mitochondrial-processing peptidase subunit beta [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 831.2 bits (2146), Expect = 1.600e-237 Identity = 426/486 (87.65%), Postives = 445/486 (91.56%), Query Frame = 0
Query: 1 MKGRKELFQQLLRRRGAATASSGLILPPCVTASQGGRPLSALSGRSLEVIAPATEVTQLPSGLRVASE--TSHGETATVGVWIDAGSRYETAQNNGAAHFLEHMAFKGTNRRAQYDIEVEIENMGGHLNAYTSREQTVYYAKVFKGDVERAMDILSDILQHSVFDERAVTRERDVILREMEEVNKQKEEVILDYLHETAFQGTGLGRTILGPEENVKSLHREALQDYIKTHYTAPRMVIAGAGAIKHGRLVDLAQQYFGNLPLQAPPGADTGMDAAVFVGSDKRVFLPKEEESEAHVALAFRGAAWTSEFAFPLMVLQTIMGCWDRTSGASRQTSGRLGQAVAEKELCHSYVTFNTCYKDIGLFGLYAVVPPEKLKDFTTAMCEHLVRMAHDVTPAEVEKAKTQLKCTLLMQLDSFAHVCEDIGRQMLTYDRRMTPAEIFARIDAVQAEDVKATALAYIIDEDHALAAIGPVGGLPDYDWIRRQCL 485
MK K + Q L RRR AA SS L+LP +G R LSA GRSLEV PATEVT+L SGLRVASE TSHGETATVGVWIDAGSRYETA NNGAAHFLEHMAFKGT RRAQYDIEVEIENMGGHLNAYTSREQTVYYAKVF+GDVERAMDILSDILQHSVFDERAV RERDVILREMEEVNKQKEEVILDYLHETAFQGTGLGRTILGPEENVKSLHREAL+DYI+THYTAPRMVIAGAGAI+HGRLV+LA +YFGNLP QAPPGADTGM+AAVFVGSDKRV EEESEAHVALAFRGAAWTSEFAFPLMVLQTIMGCWDR+SGASRQ +GRLGQAV E+ELCHSYVTFNTCYKD+GLFGLYAVVPPEKL+DF+ AM EHLVRMAHDVTPAEVEKAKTQLKCTLLMQLDSFAHVCEDIGRQMLTY RRMTPAEIFARIDAVQAEDVKATA+AYI+DEDHALAAIGPV LPDYDWIRRQCL
Sbjct: 1 MKCSKNVLQMLSRRRSAA--SSSLVLPG--PGIKGERFLSAYKGRSLEVNTPATEVTKLSSGLRVASEMQTSHGETATVGVWIDAGSRYETALNNGAAHFLEHMAFKGTQRRAQYDIEVEIENMGGHLNAYTSREQTVYYAKVFRGDVERAMDILSDILQHSVFDERAVMRERDVILREMEEVNKQKEEVILDYLHETAFQGTGLGRTILGPEENVKSLHREALKDYIRTHYTAPRMVIAGAGAIEHGRLVELADKYFGNLPRQAPPGADTGMEAAVFVGSDKRVH--SEEESEAHVALAFRGAAWTSEFAFPLMVLQTIMGCWDRSSGASRQMTGRLGQAVMERELCHSYVTFNTCYKDMGLFGLYAVVPPEKLRDFSGAMTEHLVRMAHDVTPAEVEKAKTQLKCTLLMQLDSFAHVCEDIGRQMLTYGRRMTPAEIFARIDAVQAEDVKATAMAYIVDEDHALAAIGPVANLPDYDWIRRQCL 480
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G02950.1 ID=NO02G02950.1|Name=NO02G02950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1906bp GTTCGTGTCAGTGGTTGCGCCTGTGGGTTGTTCGGACGGAAAGAGGAGGG GTAGACTTTCTGACACGGGAGATAGATGAAGCAAGCACCTAGGGAGGCGA TAAATTTGGGGCGGGCGAAGTGATCGAGGACAGACAGGGAGAGCCGACGC AGCCACCTTGGTGCTCTGATCCTATCTTGTATCTTGAGGAAGGAGAGCGA AAAGTCTGCCGGCTTCTGCTTAGCGTACGGGACGGGCGTACGGCATGGAA TGAGATGAAGACTCCGGCTGCCTCACTCATTGAGGCTCCTGCTCGCTCTG AAGCACACTTTTTTCAATCATTCTCATTGTCATCAGCCCTCTCCCACACA CAACACAGATATAGCATAGAACTCTGAAGCAATGAAGGGCAGGAAGGAGC TTTTCCAGCAGCTCCTGCGCCGGAGGGGGGCAGCAACGGCCTCTTCAGGT CTCATCTTGCCACCTTGTGTGACAGCTTCTCAGGGCGGACGCCCCCTTTC GGCCTTGTCGGGCAGGAGTCTGGAGGTGATTGCGCCTGCTACCGAAGTCA CGCAACTACCAAGCGGCCTGCGCGTCGCATCCGAGACCTCCCACGGCGAA ACCGCCACAGTCGGCGTCTGGATCGACGCCGGCAGCCGGTACGAAACGGC ACAAAACAACGGTGCAGCCCACTTTCTCGAGCACATGGCTTTTAAAGGCA CGAACCGTCGGGCGCAGTATGATATTGAGGTGGAGATTGAAAACATGGGG GGGCATTTAAATGCTTATACCTCACGGGAACAGACCGTGTATTACGCAAA GGTATTCAAAGGGGACGTCGAGAGGGCGATGGATATTCTGAGTGACATTT TGCAGCATTCAGTATTCGATGAACGGGCCGTCACGCGGGAGAGGGACGTG ATCTTGAGGGAGATGGAGGAAGTGAACAAGCAGAAGGAAGAGGTCATCTT GGATTACTTGCACGAGACAGCATTTCAGGGTACAGGGTTGGGGAGAACAA TTCTGGGACCGGAGGAGAATGTGAAGAGCCTGCATAGGGAAGCATTGCAG GACTATATCAAAACGCACTATACGGCACCTCGGATGGTGATTGCTGGGGC GGGGGCGATTAAGCATGGAAGATTGGTGGATTTGGCGCAGCAGTATTTTG GGAATTTACCGCTGCAGGCGCCTCCCGGGGCGGATACGGGGATGGATGCT GCTGTGTTTGTGGGGAGTGACAAAAGAGTGTTTTTACCGAAGGAGGAGGA GAGCGAGGCGCACGTAGCGTTGGCGTTTCGGGGGGCGGCATGGACGTCGG AGTTCGCTTTTCCTTTGATGGTGTTGCAGACGATTATGGGGTGTTGGGAC AGGACGAGCGGGGCGAGTCGGCAGACGAGCGGAAGGCTAGGCCAGGCGGT GGCGGAAAAGGAGTTGTGTCATTCGTATGTAACGTTTAATACGTGCTATA AGGATATCGGGTTATTTGGCCTCTATGCCGTGGTGCCACCGGAGAAGTTA AAGGACTTCACGACTGCCATGTGCGAGCATCTGGTGCGGATGGCCCATGA TGTCACTCCCGCGGAGGTGGAGAAGGCAAAGACACAATTAAAGTGTACAT TGCTGATGCAGTTGGACTCGTTTGCGCATGTGTGTGAGGATATTGGGCGG CAGATGCTGACGTATGACAGACGGATGACGCCTGCGGAGATTTTTGCGAG GATTGATGCAGTGCAGGCGGAGGATGTGAAAGCTACAGCGCTGGCTTACA TTATAGATGAGGACCATGCCTTGGCGGCGATAGGCCCTGTGGGCGGGTTG CCGGACTATGATTGGATTAGGCGGCAGTGTTTGTAACGTCAGGTAGGGAG AAGGGAGGGGGGAAGAAGAAATATCAAGAAAAACAAGAAATGACGATGCT TCCGAA back to topprotein sequence of NO02G02950.1 >NO02G02950.1-protein ID=NO02G02950.1-protein|Name=NO02G02950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp MKGRKELFQQLLRRRGAATASSGLILPPCVTASQGGRPLSALSGRSLEVI APATEVTQLPSGLRVASETSHGETATVGVWIDAGSRYETAQNNGAAHFLE HMAFKGTNRRAQYDIEVEIENMGGHLNAYTSREQTVYYAKVFKGDVERAM DILSDILQHSVFDERAVTRERDVILREMEEVNKQKEEVILDYLHETAFQG TGLGRTILGPEENVKSLHREALQDYIKTHYTAPRMVIAGAGAIKHGRLVD LAQQYFGNLPLQAPPGADTGMDAAVFVGSDKRVFLPKEEESEAHVALAFR GAAWTSEFAFPLMVLQTIMGCWDRTSGASRQTSGRLGQAVAEKELCHSYV TFNTCYKDIGLFGLYAVVPPEKLKDFTTAMCEHLVRMAHDVTPAEVEKAK TQLKCTLLMQLDSFAHVCEDIGRQMLTYDRRMTPAEIFARIDAVQAEDVK ATALAYIIDEDHALAAIGPVGGLPDYDWIRRQCL* back to topmRNA from alignment at chr2:793942..796274- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G02950.1 ID=NO02G02950.1|Name=NO02G02950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2333bp|location=Sequence derived from alignment at chr2:793942..796274- (Nannochloropsis oceanica) GTTCGTGTCAGTGGTTGCGCCTGTGGGTTGTTCGGACGGAAAGAGGAGGG
GTAGACTTTCTGACACGGGAGATAGATGAAGCAAGCACCTAGGGAGGCGA
TAAATTTGGGGCGGGCGAAGTGATCGAGGACAGACAGGGAGAGCCGACGC
AGCCACCTTGGTGCTCTGATCCTATCTTGTATCTTGAGGAAGGAGAGCGA
AAAGTCTGCCGGCTTCTGCTTAGCGTACGGGACGGGCGTACGGCATGGAA
TGAGATGAAGACTCCGGCTGCCTCACTCATTGAGGCTCCTGCTCGCTCTG
AAGCACACTTTTTTCAATCATTCTCATTGTCATCAGCCCTCTCCCACACA
CAACACAGATATAGCATAGAACTCTGAAGCAATGAAGGGCAGGAAGGAGC
TTTTCCAGCAGCTCCTGCGCCGGAGGGGGGCAGCAACGGCCTCTTCAGGT
CTCATCTTGCCACCTTGTGTGACAGCTTCTCAGGTACGTGGGGAAACCAG
GGCATAGTATCCACCGCTATTCCCACCGCGGCGTCTATCTTTACACGTCC
CTGACACACATTTGTCCACATTGCCATCACACACACATGATATAGGGCGG
ACGCCCCCTTTCGGCCTTGTCGGGCAGGAGTCTGGAGGTGATTGCGCCTG
CTACCGAAGTCACGCAACTACCAAGCGGCCTGCGCGTCGCATCCGAGGTA
CGTAAGACTAGAGGATGCGACAATGTGTGCGTTTGGAGTGGGGAGAGGTG
GCCGCCTCTAATGCTTCAATCCTGTGTACCTTCAATATACATGCGCTTTC
ACCTCGGGTGTGGCGCTCACCTGGATGGGGGAAAGCCAAAAAGGCATGCC
GAGGCAGGTCAACGCAAGGCGCATTCCGCTCTGTGTAAAGCGCGCCTGCA
CGTGTATCTCATACTATTAAAAGCGCGGCCAGCTGATAAACTCTGACATA
TAATTTGGTGTATGCATCTATCTTATACCCTGTCCCACACCCTTTTACAC
CACCTCAAACAGACCTCCCACGGCGAAACCGCCACAGTCGGCGTCTGGAT
CGACGCCGGCAGCCGGTACGAAACGGCACAAAACAACGGTGCAGCCCACT
TTCTCGAGCACATGGCTTTTAAAGGCACGAACCGTCGGGCGCAGTATGAT
ATTGAGGTGGAGATTGAAAACATGGGGGGGCATTTAAATGCTTATACCTC
ACGGGAACAGACCGTGTATTACGCAAAGGTATTCAAAGGGGACGTCGAGA
GGGCGATGGATATTCTGAGTGACATTTTGCAGCATTCAGTATTCGATGAA
CGGGCCGTCACGCGGGAGAGGGACGTGATCTTGAGGGAGATGGAGGAAGT
GAACAAGCAGAAGGAAGAGGTCATCTTGGATTACTTGCACGAGACAGCAT
TTCAGGGTACAGGGTTGGGGAGAACAATTCTGGGACCGGAGGAGAATGTG
AAGAGCCTGCATAGGGAAGCATTGCAGGACTATATCAAAACGCACTATAC
GGCACCTCGGATGGTGATTGCTGGGGCGGGGGCGATTAAGCATGGAAGAT
TGGTGGATTTGGCGCAGCAGTATTTTGGGAATTTACCGCTGCAGGCGCCT
CCCGGGGCGGATACGGGGATGGATGCTGCTGTGTTTGTGGGGAGTGACAA
AAGAGTGTTTTTACCGAAGGAGGAGGAGAGCGAGGCGCACGTAGCGTTGG
CGTTTCGGGGGGCGGCATGGACGTCGGAGTTCGCTTTTCCTTTGATGGTG
TTGCAGACGATTATGGGGTGTTGGGACAGGACGAGCGGGGCGAGTCGGCA
GACGAGCGGAAGGCTAGGCCAGGCGGTGGCGGAAAAGGAGTTGTGTCATT
CGTATGTAACGTTTAATACGTGCTATAAGGATATCGGGTTATTTGGCCTC
TATGCCGTGGTGCCACCGGAGAAGTTAAAGGACTTCACGACTGCCATGTG
CGAGCATCTGGTGCGGATGGCCCATGATGTCACTCCCGCGGAGGTGGAGA
AGGCAAAGACACAATTAAAGTGTACATTGCTGATGCAGTTGGACTCGTTT
GCGCATGTGTGTGAGGATATTGGGCGGCAGATGCTGACGTATGACAGACG
GATGACGCCTGCGGAGATTTTTGCGAGGATTGATGCAGTGCAGGCGGAGG
ATGTGAAAGCTACAGCGCTGGCTTACATTATAGATGAGGACCATGCCTTG
GCGGCGATAGGCCCTGTGGGCGGGTTGCCGGACTATGATTGGATTAGGCG
GCAGTGTTTGTAACGTCAGGTAGGGAGAAGGGAGGGGGGAAGAAGAAATA
TCAAGAAAAACAAGAAATGACGATGCTTCCGAA back to topCoding sequence (CDS) from alignment at chr2:793942..796274- >NO02G02950.1 ID=NO02G02950.1|Name=NO02G02950.1|organism=Nannochloropsis oceanica|type=CDS|length=1455bp|location=Sequence derived from alignment at chr2:793942..796274- (Nannochloropsis oceanica) ATGAAGGGCAGGAAGGAGCTTTTCCAGCAGCTCCTGCGCCGGAGGGGGGC AGCAACGGCCTCTTCAGGTCTCATCTTGCCACCTTGTGTGACAGCTTCTC AGGGCGGACGCCCCCTTTCGGCCTTGTCGGGCAGGAGTCTGGAGGTGATT GCGCCTGCTACCGAAGTCACGCAACTACCAAGCGGCCTGCGCGTCGCATC CGAGACCTCCCACGGCGAAACCGCCACAGTCGGCGTCTGGATCGACGCCG GCAGCCGGTACGAAACGGCACAAAACAACGGTGCAGCCCACTTTCTCGAG CACATGGCTTTTAAAGGCACGAACCGTCGGGCGCAGTATGATATTGAGGT GGAGATTGAAAACATGGGGGGGCATTTAAATGCTTATACCTCACGGGAAC AGACCGTGTATTACGCAAAGGTATTCAAAGGGGACGTCGAGAGGGCGATG GATATTCTGAGTGACATTTTGCAGCATTCAGTATTCGATGAACGGGCCGT CACGCGGGAGAGGGACGTGATCTTGAGGGAGATGGAGGAAGTGAACAAGC AGAAGGAAGAGGTCATCTTGGATTACTTGCACGAGACAGCATTTCAGGGT ACAGGGTTGGGGAGAACAATTCTGGGACCGGAGGAGAATGTGAAGAGCCT GCATAGGGAAGCATTGCAGGACTATATCAAAACGCACTATACGGCACCTC GGATGGTGATTGCTGGGGCGGGGGCGATTAAGCATGGAAGATTGGTGGAT TTGGCGCAGCAGTATTTTGGGAATTTACCGCTGCAGGCGCCTCCCGGGGC GGATACGGGGATGGATGCTGCTGTGTTTGTGGGGAGTGACAAAAGAGTGT TTTTACCGAAGGAGGAGGAGAGCGAGGCGCACGTAGCGTTGGCGTTTCGG GGGGCGGCATGGACGTCGGAGTTCGCTTTTCCTTTGATGGTGTTGCAGAC GATTATGGGGTGTTGGGACAGGACGAGCGGGGCGAGTCGGCAGACGAGCG GAAGGCTAGGCCAGGCGGTGGCGGAAAAGGAGTTGTGTCATTCGTATGTA ACGTTTAATACGTGCTATAAGGATATCGGGTTATTTGGCCTCTATGCCGT GGTGCCACCGGAGAAGTTAAAGGACTTCACGACTGCCATGTGCGAGCATC TGGTGCGGATGGCCCATGATGTCACTCCCGCGGAGGTGGAGAAGGCAAAG ACACAATTAAAGTGTACATTGCTGATGCAGTTGGACTCGTTTGCGCATGT GTGTGAGGATATTGGGCGGCAGATGCTGACGTATGACAGACGGATGACGC CTGCGGAGATTTTTGCGAGGATTGATGCAGTGCAGGCGGAGGATGTGAAA GCTACAGCGCTGGCTTACATTATAGATGAGGACCATGCCTTGGCGGCGAT AGGCCCTGTGGGCGGGTTGCCGGACTATGATTGGATTAGGCGGCAGTGTT TGTAA back to top
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