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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:725151..726295 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G02610.1 vs.
Match: EWM30405.1 (hypothetical protein Naga_100026g42 [Nannochloropsis gaditana]) HSP 1 Score: 129.4 bits (324), Expect = 1.900e-26 Identity = 67/111 (60.36%), Postives = 77/111 (69.37%), Query Frame = 0
Query: 139 LRATTTGGEGAALLNLYTATRQVLSCRVTSRTLLRHEAISDRNRHPNINHCLFLITPVCFWAYCKHPKLFATLHPFSPTAPERRPEDVVYDSLGKRKRRRRLRQPTKQQQE 250
+ ++ GGE A LNLYTAT QVLSCRVT+R L + + P HCL LITPV FWAYCKHP+LFATLHP SPTAPERRPED YDS G+RKRRRR + Q +
Sbjct: 1 MAVSSRGGESFAFLNLYTATLQVLSCRVTARILRTPTSQIGASSAPTTRHCLLLITPVSFWAYCKHPELFATLHPLSPTAPERRPEDFDYDSSGRRKRRRRCHSSAQSQNQ 111
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G02610.1 ID=NO02G02610.1|Name=NO02G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1145bp ACCACAGAAATATGGAGCCACTATCAATATCGACCCCGCCTTCTTTGCCT CGCAGCTCGGCCCAGCCTCCTCTAGCTTCTCCGCTAGACCTCGATGCACC ATTGCCCCTGTGGAAGTCGTCACCTTCTGTGGCCCCCACGGACGACACGG CCGGCCGAACCTGCTTTTGCCGCCTCCTGATACGCCTCGAAATGAACTTT TCTACCATCCCAAATGGTCGGGATGAAAAGGACATGGTGCCGGTCATTGA ACACGGGGACATGGAGTTCCTCCGCCTCTTTCGTTTCCTCCCCTACGGCG CCTTGACGGCCTCTCCCACTGCTGCGGCGACTGCCTCGACCACACTGCTG CATGGTCAGCGTCTATCGATGTTGTTTGGCCCTGCCACCGATTTGACGCG TGCACAAGCTTTGTTGACGGCATGCCTGCGAGCCACCACCACAGGAGGTG AAGGCGCTGCCCTCCTCAACCTTTACACTGCCACGCGGCAGGTCTTGAGC TGTCGGGTTACTTCGCGAACATTGCTTAGACATGAGGCTATAAGTGACAG AAATAGGCACCCCAATATCAATCATTGCCTTTTTCTCATTACTCCGGTGT GCTTCTGGGCCTACTGCAAGCACCCGAAGCTCTTTGCTACCCTCCATCCT TTTTCACCCACGGCGCCGGAGCGACGCCCTGAGGACGTGGTCTATGACAG CCTTGGGAAGAGGAAACGACGACGCCGCCTACGACAACCAACAAAGCAGC AGCAAGAGCATCAGGAGGAGCAACAGGAGGAGCAGCAGCATCAGGAGGAG CAGCAGCATCAGGAGGAGCAGCAGCATCAGGAGGAGCAGCAGATAAAAGA AAAAGAGGCACCAACAAGCAGGAAGAAGAAAACCAAGCAGCGGCGACAGC AACAGCAGCGACATTAACAGTTGACGTCTTATTTTTTTTGTACTTCACCG AAGGAGGGAGTTCCACAGATTTCTATAAGCGGTATTCTTTCACTGACTGC GGATGAATTAGGAAATAGAAGGGAGAATCACAACAATTTTAAATCGCGCT AATCAGAAGCAGACCTTGGCAGAGTGGTTGTAAATAAGAAGACTTCTACC CCAGAAGTTACCAGAATGTATCAATAACTAAGAAAGGACGGCGCA back to topprotein sequence of NO02G02610.1 >NO02G02610.1-protein ID=NO02G02610.1-protein|Name=NO02G02610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp MEPLSISTPPSLPRSSAQPPLASPLDLDAPLPLWKSSPSVAPTDDTAGRT CFCRLLIRLEMNFSTIPNGRDEKDMVPVIEHGDMEFLRLFRFLPYGALTA SPTAAATASTTLLHGQRLSMLFGPATDLTRAQALLTACLRATTTGGEGAA LLNLYTATRQVLSCRVTSRTLLRHEAISDRNRHPNINHCLFLITPVCFWA YCKHPKLFATLHPFSPTAPERRPEDVVYDSLGKRKRRRRLRQPTKQQQEH QEEQQEEQQHQEEQQHQEEQQHQEEQQIKEKEAPTSRKKKTKQRRQQQQR H* back to topmRNA from alignment at chr2:725151..726295+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G02610.1 ID=NO02G02610.1|Name=NO02G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1145bp|location=Sequence derived from alignment at chr2:725151..726295+ (Nannochloropsis oceanica) ACCACAGAAATATGGAGCCACTATCAATATCGACCCCGCCTTCTTTGCCT
CGCAGCTCGGCCCAGCCTCCTCTAGCTTCTCCGCTAGACCTCGATGCACC
ATTGCCCCTGTGGAAGTCGTCACCTTCTGTGGCCCCCACGGACGACACGG
CCGGCCGAACCTGCTTTTGCCGCCTCCTGATACGCCTCGAAATGAACTTT
TCTACCATCCCAAATGGTCGGGATGAAAAGGACATGGTGCCGGTCATTGA
ACACGGGGACATGGAGTTCCTCCGCCTCTTTCGTTTCCTCCCCTACGGCG
CCTTGACGGCCTCTCCCACTGCTGCGGCGACTGCCTCGACCACACTGCTG
CATGGTCAGCGTCTATCGATGTTGTTTGGCCCTGCCACCGATTTGACGCG
TGCACAAGCTTTGTTGACGGCATGCCTGCGAGCCACCACCACAGGAGGTG
AAGGCGCTGCCCTCCTCAACCTTTACACTGCCACGCGGCAGGTCTTGAGC
TGTCGGGTTACTTCGCGAACATTGCTTAGACATGAGGCTATAAGTGACAG
AAATAGGCACCCCAATATCAATCATTGCCTTTTTCTCATTACTCCGGTGT
GCTTCTGGGCCTACTGCAAGCACCCGAAGCTCTTTGCTACCCTCCATCCT
TTTTCACCCACGGCGCCGGAGCGACGCCCTGAGGACGTGGTCTATGACAG
CCTTGGGAAGAGGAAACGACGACGCCGCCTACGACAACCAACAAAGCAGC
AGCAAGAGCATCAGGAGGAGCAACAGGAGGAGCAGCAGCATCAGGAGGAG
CAGCAGCATCAGGAGGAGCAGCAGCATCAGGAGGAGCAGCAGATAAAAGA
AAAAGAGGCACCAACAAGCAGGAAGAAGAAAACCAAGCAGCGGCGACAGC
AACAGCAGCGACATTAACAGTTGACGTCTTATTTTTTTTGTACTTCACCG
AAGGAGGGAGTTCCACAGATTTCTATAAGCGGTATTCTTTCACTGACTGC
GGATGAATTAGGAAATAGAAGGGAGAATCACAACAATTTTAAATCGCGCT
AATCAGAAGCAGACCTTGGCAGAGTGGTTGTAAATAAGAAGACTTCTACC
CCAGAAGTTACCAGAATGTATCAATAACTAAGAAAGGACGGCGCA back to topCoding sequence (CDS) from alignment at chr2:725151..726295+ >NO02G02610.1 ID=NO02G02610.1|Name=NO02G02610.1|organism=Nannochloropsis oceanica|type=CDS|length=906bp|location=Sequence derived from alignment at chr2:725151..726295+ (Nannochloropsis oceanica) ATGGAGCCACTATCAATATCGACCCCGCCTTCTTTGCCTCGCAGCTCGGC CCAGCCTCCTCTAGCTTCTCCGCTAGACCTCGATGCACCATTGCCCCTGT GGAAGTCGTCACCTTCTGTGGCCCCCACGGACGACACGGCCGGCCGAACC TGCTTTTGCCGCCTCCTGATACGCCTCGAAATGAACTTTTCTACCATCCC AAATGGTCGGGATGAAAAGGACATGGTGCCGGTCATTGAACACGGGGACA TGGAGTTCCTCCGCCTCTTTCGTTTCCTCCCCTACGGCGCCTTGACGGCC TCTCCCACTGCTGCGGCGACTGCCTCGACCACACTGCTGCATGGTCAGCG TCTATCGATGTTGTTTGGCCCTGCCACCGATTTGACGCGTGCACAAGCTT TGTTGACGGCATGCCTGCGAGCCACCACCACAGGAGGTGAAGGCGCTGCC CTCCTCAACCTTTACACTGCCACGCGGCAGGTCTTGAGCTGTCGGGTTAC TTCGCGAACATTGCTTAGACATGAGGCTATAAGTGACAGAAATAGGCACC CCAATATCAATCATTGCCTTTTTCTCATTACTCCGGTGTGCTTCTGGGCC TACTGCAAGCACCCGAAGCTCTTTGCTACCCTCCATCCTTTTTCACCCAC GGCGCCGGAGCGACGCCCTGAGGACGTGGTCTATGACAGCCTTGGGAAGA GGAAACGACGACGCCGCCTACGACAACCAACAAAGCAGCAGCAAGAGCAT CAGGAGGAGCAACAGGAGGAGCAGCAGCATCAGGAGGAGCAGCAGCATCA GGAGGAGCAGCAGCATCAGGAGGAGCAGCAGATAAAAGAAAAAGAGGCAC CAACAAGCAGGAAGAAGAAAACCAAGCAGCGGCGACAGCAACAGCAGCGA CATTAA back to top
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