NO02G02560.1, NO02G02560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02560.1
Unique NameNO02G02560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1524
Alignment locationchr2:715240..716763 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:715240..716763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02560.1 vs.
Match: EWM30366.1 (hypothetical protein Naga_100026g47 [Nannochloropsis gaditana])

HSP 1 Score: 374.4 bits (960), Expect = 5.600e-100
Identity = 228/486 (46.91%), Postives = 297/486 (61.11%), Query Frame = 0 
Query:   10 AAPSQQPQMRRIPPKQKAASAYTSAREHRRAAVLQRQRAARRELTYNLRALISNAIDKEEPGAETGEDDSRQDQALEETCDGAPMAMDEGGAQGSTQYFDEKGAHPNKRVRGKQAQFYASQFSIPEWMVDIPRDLNGHLSTEEGGGWFVMPRPEGKRCLMVASGGITVTRLMNGEVLHRFPSALPNGSPRAKGPKDGWTLLDCIYSEASRTYFVLDLLCWRKMELYDCTCEFRFFILRSKFEEELGRSGAGGGAGGAGGAGGAGGGAEAAGGYLLEPLPYFECDSNGLRRAYGDYAPFVRDGLLFWSKQSYVEIGPSPLVLLWKDMKCSRYFLRETQQQQQQQHHHHPPLSCVLLVQKAKGE-DGEKSGYVLSTLDDVVLGRTTLEEVNAWGLGQVQD--GRAGGERE-EEEQMLIRFWYEGATEDEKNNQQQLHGLQFDRKCSSKRAVADAWSKLLFHARAKKGIREGGTAVTFDTLLQAVERPV 492
            A+P Q+P      PK K  S+ +S+R+ RR++VLQRQRAARRELT +LRAL  + I +++  + T   +  Q    +   +   M +D    QG  Q   EK A   KR R +QA  YA++F+IPEWM++IP DL+    T  GGGW VMP+P GKRCLM A+GG+T+TR+ +GEVLHR  S LPNGS  AKGPK+GWTLLDC+Y E+SRTY+VLDLLCWRKMELYDC C+FR F LRSKF EE+          GA    G     E    + LE LP++EC   GL+       PF +DG LFW+K+ YV+ G +PL+LLWKD   S    R++           P  S VL V+  +   +G+   Y+L TL+ + +G  T +E + W   Q Q   G  GGE + E E  L+ FWYE ATEDE + + +LHGL + R C      AD WSKLLF +R K+G+ EGG AVTFD LL  VER +
Sbjct:    7 ASPQQRPY-----PKSKLISS-SSSRDKRRSSVLQRQRAARRELTDSLRALHRDTIAEDDVDSMTRSGNGSQLYESDVIQEDDGMMVD---GQGQVQA--EKIALRRKRARARQATIYANRFAIPEWMIEIPHDLH---PTGGGGGWLVMPQPMGKRCLMAATGGLTLTRMTSGEVLHRLASPLPNGSAWAKGPKNGWTLLDCVYQESSRTYYVLDLLCWRKMELYDCACDFRLFFLRSKFAEEMEHRA------GAILMHGTDASNET---FHLELLPWYECHRTGLQMLRSASFPFEQDGFLFWNKEGYVQAGLTPLILLWKDAHSSHSLYRDSLL---------PRWSAVLSVRLCEDPGEGKTQDYLLLTLEGLAVGSVTRDEFHRWSRSQEQGEAGSIGGEGDIEGEGFLVCFWYEEATEDETSQEHRLHGLTYRRICVPSSETADCWSKLLFQSRVKRGM-EGG-AVTFDMLLCDVEREI 458
The following BLAST results are available for this feature:
BLAST of NO02G02560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30366.15.600e-10046.91hypothetical protein Naga_100026g47 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02560NO02G02560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02560.1NO02G02560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02560.1.cds1NO02G02560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02560.1 ID=NO02G02560.1|Name=NO02G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1524bp
ATGATGCATCGACCGCCATACAAGCATGCTGCCCCATCCCAGCAGCCGCA
GATGCGGCGGATACCACCCAAGCAGAAAGCAGCCAGCGCTTATACCTCGG
CGCGCGAGCATCGACGTGCAGCCGTCTTACAGCGGCAGCGGGCGGCGCGG
AGAGAATTGACATACAATCTGCGGGCCTTAATCAGCAATGCAATAGACAA
AGAGGAGCCTGGGGCCGAGACAGGGGAGGACGACTCGAGGCAAGACCAAG
CCTTGGAGGAAACGTGCGACGGCGCACCTATGGCAATGGACGAAGGGGGA
GCGCAAGGGTCAACCCAATATTTTGATGAAAAAGGAGCGCATCCAAACAA
ACGGGTGCGGGGTAAGCAGGCCCAATTTTATGCCAGCCAGTTTTCCATCC
CAGAATGGATGGTAGATATTCCCCGAGATTTAAACGGACACCTCTCGACT
GAAGAAGGAGGAGGTTGGTTCGTCATGCCACGCCCGGAGGGGAAACGATG
CCTGATGGTGGCTTCGGGCGGAATCACCGTGACACGGCTGATGAATGGGG
AGGTGCTCCATCGATTTCCATCCGCCTTGCCCAACGGTTCACCACGCGCC
AAGGGTCCCAAAGATGGGTGGACGTTGCTTGATTGCATTTATTCGGAGGC
GAGCCGGACGTACTTTGTGCTGGATTTGCTGTGCTGGCGGAAGATGGAAC
TTTATGACTGTACGTGTGAGTTTCGTTTTTTTATACTGCGATCCAAATTT
GAGGAGGAACTGGGAAGGTCTGGAGCAGGAGGAGGAGCAGGAGGAGCAGG
AGGAGCAGGAGGAGCAGGAGGAGGAGCAGAAGCAGCAGGAGGGTACCTTT
TGGAGCCTTTGCCCTACTTCGAATGTGATTCTAACGGCCTACGACGCGCG
TATGGTGATTACGCTCCCTTTGTTCGGGATGGGTTGCTGTTTTGGAGTAA
GCAGAGCTACGTTGAGATAGGCCCGAGTCCGCTTGTATTGCTCTGGAAGG
ATATGAAATGCTCGCGGTACTTTCTTCGGGAAACACAACAACAGCAGCAG
CAGCAGCACCACCACCACCCACCATTAAGCTGTGTATTATTGGTGCAGAA
GGCAAAGGGTGAGGATGGGGAGAAGAGTGGATACGTTCTGAGCACACTGG
ACGACGTGGTCTTGGGCCGGACGACGCTGGAGGAGGTGAATGCGTGGGGC
CTCGGACAAGTGCAAGACGGAAGGGCGGGCGGAGAGAGAGAGGAAGAAGA
ACAAATGTTGATCCGATTTTGGTATGAAGGAGCAACGGAGGACGAGAAAA
ATAACCAGCAGCAGTTGCATGGGCTTCAGTTTGACAGGAAGTGCTCGTCG
AAGAGGGCGGTGGCTGATGCCTGGAGTAAGCTCCTGTTCCACGCTCGGGC
CAAGAAGGGGATAAGGGAGGGAGGGACGGCGGTGACGTTTGATACGTTGT
TGCAGGCGGTTGAGAGGCCTGTACAAAAGGAGGTGAGGGAGGAATCGAAT
GACGTCGAAGGGATGATGTGCTGA
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protein sequence of NO02G02560.1

>NO02G02560.1-protein ID=NO02G02560.1-protein|Name=NO02G02560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=508bp
MMHRPPYKHAAPSQQPQMRRIPPKQKAASAYTSAREHRRAAVLQRQRAAR
RELTYNLRALISNAIDKEEPGAETGEDDSRQDQALEETCDGAPMAMDEGG
AQGSTQYFDEKGAHPNKRVRGKQAQFYASQFSIPEWMVDIPRDLNGHLST
EEGGGWFVMPRPEGKRCLMVASGGITVTRLMNGEVLHRFPSALPNGSPRA
KGPKDGWTLLDCIYSEASRTYFVLDLLCWRKMELYDCTCEFRFFILRSKF
EEELGRSGAGGGAGGAGGAGGAGGGAEAAGGYLLEPLPYFECDSNGLRRA
YGDYAPFVRDGLLFWSKQSYVEIGPSPLVLLWKDMKCSRYFLRETQQQQQ
QQHHHHPPLSCVLLVQKAKGEDGEKSGYVLSTLDDVVLGRTTLEEVNAWG
LGQVQDGRAGGEREEEEQMLIRFWYEGATEDEKNNQQQLHGLQFDRKCSS
KRAVADAWSKLLFHARAKKGIREGGTAVTFDTLLQAVERPVQKEVREESN
DVEGMMC*
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mRNA from alignment at chr2:715240..716763+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02560.1 ID=NO02G02560.1|Name=NO02G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1524bp|location=Sequence derived from alignment at chr2:715240..716763+ (Nannochloropsis oceanica)
ATGATGCATCGACCGCCATACAAGCATGCTGCCCCATCCCAGCAGCCGCA
GATGCGGCGGATACCACCCAAGCAGAAAGCAGCCAGCGCTTATACCTCGG
CGCGCGAGCATCGACGTGCAGCCGTCTTACAGCGGCAGCGGGCGGCGCGG
AGAGAATTGACATACAATCTGCGGGCCTTAATCAGCAATGCAATAGACAA
AGAGGAGCCTGGGGCCGAGACAGGGGAGGACGACTCGAGGCAAGACCAAG
CCTTGGAGGAAACGTGCGACGGCGCACCTATGGCAATGGACGAAGGGGGA
GCGCAAGGGTCAACCCAATATTTTGATGAAAAAGGAGCGCATCCAAACAA
ACGGGTGCGGGGTAAGCAGGCCCAATTTTATGCCAGCCAGTTTTCCATCC
CAGAATGGATGGTAGATATTCCCCGAGATTTAAACGGACACCTCTCGACT
GAAGAAGGAGGAGGTTGGTTCGTCATGCCACGCCCGGAGGGGAAACGATG
CCTGATGGTGGCTTCGGGCGGAATCACCGTGACACGGCTGATGAATGGGG
AGGTGCTCCATCGATTTCCATCCGCCTTGCCCAACGGTTCACCACGCGCC
AAGGGTCCCAAAGATGGGTGGACGTTGCTTGATTGCATTTATTCGGAGGC
GAGCCGGACGTACTTTGTGCTGGATTTGCTGTGCTGGCGGAAGATGGAAC
TTTATGACTGTACGTGTGAGTTTCGTTTTTTTATACTGCGATCCAAATTT
GAGGAGGAACTGGGAAGGTCTGGAGCAGGAGGAGGAGCAGGAGGAGCAGG
AGGAGCAGGAGGAGCAGGAGGAGGAGCAGAAGCAGCAGGAGGGTACCTTT
TGGAGCCTTTGCCCTACTTCGAATGTGATTCTAACGGCCTACGACGCGCG
TATGGTGATTACGCTCCCTTTGTTCGGGATGGGTTGCTGTTTTGGAGTAA
GCAGAGCTACGTTGAGATAGGCCCGAGTCCGCTTGTATTGCTCTGGAAGG
ATATGAAATGCTCGCGGTACTTTCTTCGGGAAACACAACAACAGCAGCAG
CAGCAGCACCACCACCACCCACCATTAAGCTGTGTATTATTGGTGCAGAA
GGCAAAGGGTGAGGATGGGGAGAAGAGTGGATACGTTCTGAGCACACTGG
ACGACGTGGTCTTGGGCCGGACGACGCTGGAGGAGGTGAATGCGTGGGGC
CTCGGACAAGTGCAAGACGGAAGGGCGGGCGGAGAGAGAGAGGAAGAAGA
ACAAATGTTGATCCGATTTTGGTATGAAGGAGCAACGGAGGACGAGAAAA
ATAACCAGCAGCAGTTGCATGGGCTTCAGTTTGACAGGAAGTGCTCGTCG
AAGAGGGCGGTGGCTGATGCCTGGAGTAAGCTCCTGTTCCACGCTCGGGC
CAAGAAGGGGATAAGGGAGGGAGGGACGGCGGTGACGTTTGATACGTTGT
TGCAGGCGGTTGAGAGGCCTGTACAAAAGGAGGTGAGGGAGGAATCGAAT
GACGTCGAAGGGATGATGTGCTGA
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Coding sequence (CDS) from alignment at chr2:715240..716763+

>NO02G02560.1 ID=NO02G02560.1|Name=NO02G02560.1|organism=Nannochloropsis oceanica|type=CDS|length=1524bp|location=Sequence derived from alignment at chr2:715240..716763+ (Nannochloropsis oceanica)
ATGATGCATCGACCGCCATACAAGCATGCTGCCCCATCCCAGCAGCCGCA
GATGCGGCGGATACCACCCAAGCAGAAAGCAGCCAGCGCTTATACCTCGG
CGCGCGAGCATCGACGTGCAGCCGTCTTACAGCGGCAGCGGGCGGCGCGG
AGAGAATTGACATACAATCTGCGGGCCTTAATCAGCAATGCAATAGACAA
AGAGGAGCCTGGGGCCGAGACAGGGGAGGACGACTCGAGGCAAGACCAAG
CCTTGGAGGAAACGTGCGACGGCGCACCTATGGCAATGGACGAAGGGGGA
GCGCAAGGGTCAACCCAATATTTTGATGAAAAAGGAGCGCATCCAAACAA
ACGGGTGCGGGGTAAGCAGGCCCAATTTTATGCCAGCCAGTTTTCCATCC
CAGAATGGATGGTAGATATTCCCCGAGATTTAAACGGACACCTCTCGACT
GAAGAAGGAGGAGGTTGGTTCGTCATGCCACGCCCGGAGGGGAAACGATG
CCTGATGGTGGCTTCGGGCGGAATCACCGTGACACGGCTGATGAATGGGG
AGGTGCTCCATCGATTTCCATCCGCCTTGCCCAACGGTTCACCACGCGCC
AAGGGTCCCAAAGATGGGTGGACGTTGCTTGATTGCATTTATTCGGAGGC
GAGCCGGACGTACTTTGTGCTGGATTTGCTGTGCTGGCGGAAGATGGAAC
TTTATGACTGTACGTGTGAGTTTCGTTTTTTTATACTGCGATCCAAATTT
GAGGAGGAACTGGGAAGGTCTGGAGCAGGAGGAGGAGCAGGAGGAGCAGG
AGGAGCAGGAGGAGCAGGAGGAGGAGCAGAAGCAGCAGGAGGGTACCTTT
TGGAGCCTTTGCCCTACTTCGAATGTGATTCTAACGGCCTACGACGCGCG
TATGGTGATTACGCTCCCTTTGTTCGGGATGGGTTGCTGTTTTGGAGTAA
GCAGAGCTACGTTGAGATAGGCCCGAGTCCGCTTGTATTGCTCTGGAAGG
ATATGAAATGCTCGCGGTACTTTCTTCGGGAAACACAACAACAGCAGCAG
CAGCAGCACCACCACCACCCACCATTAAGCTGTGTATTATTGGTGCAGAA
GGCAAAGGGTGAGGATGGGGAGAAGAGTGGATACGTTCTGAGCACACTGG
ACGACGTGGTCTTGGGCCGGACGACGCTGGAGGAGGTGAATGCGTGGGGC
CTCGGACAAGTGCAAGACGGAAGGGCGGGCGGAGAGAGAGAGGAAGAAGA
ACAAATGTTGATCCGATTTTGGTATGAAGGAGCAACGGAGGACGAGAAAA
ATAACCAGCAGCAGTTGCATGGGCTTCAGTTTGACAGGAAGTGCTCGTCG
AAGAGGGCGGTGGCTGATGCCTGGAGTAAGCTCCTGTTCCACGCTCGGGC
CAAGAAGGGGATAAGGGAGGGAGGGACGGCGGTGACGTTTGATACGTTGT
TGCAGGCGGTTGAGAGGCCTGTACAAAAGGAGGTGAGGGAGGAATCGAAT
GACGTCGAAGGGATGATGTGCTGA
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Synonyms
Publications