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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:503936..505561 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G01720.1 vs.
Match: EWM30534.1 (armadillo repeat containing 6 [Nannochloropsis gaditana]) HSP 1 Score: 694.1 bits (1790), Expect = 3.400e-196 Identity = 351/534 (65.73%), Postives = 426/534 (79.78%), Query Frame = 0
Query: 13 KKRISQVTFDETVRENMEEFELEREEAVTDAVRQFTSQGVDLGNICVALHECDGHWLKEVDAQLTFFITCLDNGVQVALPASWDRVGTVVALRALHAALTNADADKAANARKLMGSKGTVNVVARLWQEHQEEAAA-----DDDSAVVDARILALAVTQALCSGGSAGEASRDMFWPTSMRMLCNAAQQAYSQQDRAFYLPFLSLARVLCTRAEDNKVHYVRYGGLDLLVGALKDDPWASDRNIVCETCKALKAVTATDDFRKDFSASHTHTRALVGKGAIPLLLQSCHRFRTDLDTSAAALAALRNLANNDESVNQIASEGGLDLAVRALEAHWFHPPLAQTAIGLFRNISANDRHKTSLCNNGAAELMLKAMKKHGGKVKIQEHGLATMGAMALRSPENCKQLVGLGAVLVILQALRNHAEARSVQRQACLAIRNMVSREPEVGEAFLEGGAEPLLRLAGRYQESVDEAYAALRDLKCDVKRVTVDPVTGKVQDADQFGSTKSCFHPVFESSDNIEGAVEAAISAPSNSYRF 542
KKRISQ TFDETV ENM + E++R +AV DA++QFTSQGVDL NICV L+E DG WL+EVDAQLT CLDNG ++LP SW T+ AL+ALH+ALT++D +A NARKL+GSK VNV+AR+WQE +E + + A+ AR+LA+AVT+A C GGSAG+ S+ F PTSMRMLC AA++A ++ R+F + LSL RVL TRAED+KV +V +GGLD LV L+ + WASD IV E C A+KAVTA DDFRKDFSASHTHTRAL KG IP+LLQ+C RF D DT A L ALRNLANN+ESVNQIASEGG+ VRAL+AH HP LA+ A GLFRN+SA+DRHKT LC NGAA+LML+AM++H + KIQEHGLAT+GAMALRSP+NC+ L G+GAV VIL+AL H EAR++QRQ CLA+RNMVSR PE+GEAFLE GAEPLLRLAGRYQESVDEAYAALRDLKCDVKRV VDP+TG+++ ++FGS K+ F P+F+SS++IEGAV+AAI+APSNSYRF
Sbjct: 33 KKRISQATFDETVYENMVDLEMDRADAVKDALQQFTSQGVDLENICVTLNENDGRWLEEVDAQLTALKNCLDNGTDLSLPPSWSPEATLAALQALHSALTDSDIKRADNARKLLGSKDAVNVIARIWQEWGDEPSCVTLDPAEAEAIAKARLLAVAVTEAACGGGSAGDQSKHAFRPTSMRMLCQAARRAQLREQRSFLIASLSLVRVLSTRAEDHKVSFVEHGGLDTLVECLEKEAWASDCEIVREACGAIKAVTAVDDFRKDFSASHTHTRALTAKGCIPVLLQACRRFGADSDTVATGLDALRNLANNEESVNQIASEGGVVGTVRALQAHLSHPALARAATGLFRNVSADDRHKTRLCKNGAAQLMLEAMREHAQERKIQEHGLATLGAMALRSPDNCRHLFGMGAVSVILEALERHPEARAIQRQGCLAVRNMVSRVPELGEAFLEAGAEPLLRLAGRYQESVDEAYAALRDLKCDVKRVIVDPLTGEIKAPEEFGSAKTSFRPLFDSSNDIEGAVQAAINAPSNSYRF 566
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G01720.1 ID=NO02G01720.1|Name=NO02G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1626bp ATGACCTCCACCACCGCGCCTGCCGCGGGGCCCGCAAAGAAGAGAATATC GCAAGTCACGTTCGATGAGACGGTGCGGGAGAACATGGAGGAGTTTGAGT TAGAGCGGGAAGAGGCCGTGACGGATGCTGTTCGGCAGTTCACGTCGCAA GGCGTTGACTTGGGCAACATTTGCGTGGCCTTGCACGAATGCGACGGGCA TTGGCTCAAGGAGGTCGATGCACAATTGACTTTCTTCATAACGTGCTTAG ATAATGGGGTCCAGGTAGCGTTGCCGGCATCGTGGGACCGTGTGGGGACG GTGGTGGCTTTGCGGGCTCTGCACGCGGCTTTGACGAATGCGGACGCTGA CAAAGCAGCGAATGCGCGGAAGCTGATGGGCTCTAAAGGAACGGTGAATG TGGTGGCACGGTTATGGCAAGAACATCAGGAAGAAGCTGCTGCTGACGAT GATAGTGCTGTGGTCGATGCCCGCATCCTGGCACTGGCCGTGACGCAGGC TCTGTGTAGTGGAGGCTCTGCGGGGGAGGCAAGCCGTGACATGTTCTGGC CGACAAGCATGCGAATGCTGTGCAATGCTGCCCAACAAGCATATTCACAA CAGGACCGAGCGTTCTATTTGCCTTTCCTTTCCTTGGCCCGTGTGTTGTG CACCCGGGCGGAAGATAACAAGGTGCATTATGTGCGATATGGTGGACTAG ACCTATTAGTAGGCGCATTGAAAGATGATCCCTGGGCCAGCGACCGCAAT ATCGTCTGCGAGACCTGCAAAGCTCTAAAGGCTGTGACTGCAACTGATGA CTTTAGGAAGGATTTCAGCGCCTCACACACCCATACCCGCGCTTTGGTCG GCAAGGGTGCCATCCCCCTCCTCCTTCAATCATGTCACCGCTTTCGCACC GATCTCGACACTTCGGCCGCCGCCCTGGCCGCCTTGCGAAATTTGGCCAA CAACGACGAGAGCGTCAATCAGATTGCCTCGGAGGGAGGCTTAGATCTCG CGGTACGTGCCTTGGAAGCGCATTGGTTTCATCCTCCTCTGGCCCAAACG GCCATTGGGCTGTTTCGCAACATCTCTGCCAATGATCGACACAAGACAAG CTTGTGCAATAACGGTGCTGCGGAATTGATGCTCAAGGCTATGAAAAAGC ACGGGGGAAAAGTGAAGATTCAAGAACATGGGCTCGCGACGATGGGTGCA ATGGCTCTGCGGAGCCCTGAAAACTGTAAGCAGCTGGTGGGGCTGGGTGC GGTGTTGGTGATCTTGCAAGCACTACGCAACCATGCGGAGGCTCGTAGCG TCCAGAGGCAGGCATGCTTGGCAATCAGGAACATGGTAAGCCGGGAACCG GAGGTGGGGGAGGCATTTTTGGAGGGGGGAGCGGAACCCTTGTTGAGACT TGCGGGGAGGTATCAGGAAAGCGTGGATGAGGCATATGCGGCGCTGCGTG ACTTGAAATGTGATGTAAAGAGAGTGACCGTTGACCCTGTCACAGGGAAG GTTCAGGATGCAGACCAATTTGGGAGTACCAAGAGTTGTTTCCACCCCGT GTTTGAGAGTAGTGATAATATCGAGGGGGCAGTGGAAGCCGCTATCAGTG CGCCGTCTAACTCGTATCGATTTTAA back to topprotein sequence of NO02G01720.1 >NO02G01720.1-protein ID=NO02G01720.1-protein|Name=NO02G01720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=542bp MTSTTAPAAGPAKKRISQVTFDETVRENMEEFELEREEAVTDAVRQFTSQ GVDLGNICVALHECDGHWLKEVDAQLTFFITCLDNGVQVALPASWDRVGT VVALRALHAALTNADADKAANARKLMGSKGTVNVVARLWQEHQEEAAADD DSAVVDARILALAVTQALCSGGSAGEASRDMFWPTSMRMLCNAAQQAYSQ QDRAFYLPFLSLARVLCTRAEDNKVHYVRYGGLDLLVGALKDDPWASDRN IVCETCKALKAVTATDDFRKDFSASHTHTRALVGKGAIPLLLQSCHRFRT DLDTSAAALAALRNLANNDESVNQIASEGGLDLAVRALEAHWFHPPLAQT AIGLFRNISANDRHKTSLCNNGAAELMLKAMKKHGGKVKIQEHGLATMGA MALRSPENCKQLVGLGAVLVILQALRNHAEARSVQRQACLAIRNMVSREP EVGEAFLEGGAEPLLRLAGRYQESVDEAYAALRDLKCDVKRVTVDPVTGK VQDADQFGSTKSCFHPVFESSDNIEGAVEAAISAPSNSYRF* back to topmRNA from alignment at chr2:503936..505561- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G01720.1 ID=NO02G01720.1|Name=NO02G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1626bp|location=Sequence derived from alignment at chr2:503936..505561- (Nannochloropsis oceanica) ATGACCTCCACCACCGCGCCTGCCGCGGGGCCCGCAAAGAAGAGAATATC
GCAAGTCACGTTCGATGAGACGGTGCGGGAGAACATGGAGGAGTTTGAGT
TAGAGCGGGAAGAGGCCGTGACGGATGCTGTTCGGCAGTTCACGTCGCAA
GGCGTTGACTTGGGCAACATTTGCGTGGCCTTGCACGAATGCGACGGGCA
TTGGCTCAAGGAGGTCGATGCACAATTGACTTTCTTCATAACGTGCTTAG
ATAATGGGGTCCAGGTAGCGTTGCCGGCATCGTGGGACCGTGTGGGGACG
GTGGTGGCTTTGCGGGCTCTGCACGCGGCTTTGACGAATGCGGACGCTGA
CAAAGCAGCGAATGCGCGGAAGCTGATGGGCTCTAAAGGAACGGTGAATG
TGGTGGCACGGTTATGGCAAGAACATCAGGAAGAAGCTGCTGCTGACGAT
GATAGTGCTGTGGTCGATGCCCGCATCCTGGCACTGGCCGTGACGCAGGC
TCTGTGTAGTGGAGGCTCTGCGGGGGAGGCAAGCCGTGACATGTTCTGGC
CGACAAGCATGCGAATGCTGTGCAATGCTGCCCAACAAGCATATTCACAA
CAGGACCGAGCGTTCTATTTGCCTTTCCTTTCCTTGGCCCGTGTGTTGTG
CACCCGGGCGGAAGATAACAAGGTGCATTATGTGCGATATGGTGGACTAG
ACCTATTAGTAGGCGCATTGAAAGATGATCCCTGGGCCAGCGACCGCAAT
ATCGTCTGCGAGACCTGCAAAGCTCTAAAGGCTGTGACTGCAACTGATGA
CTTTAGGAAGGATTTCAGCGCCTCACACACCCATACCCGCGCTTTGGTCG
GCAAGGGTGCCATCCCCCTCCTCCTTCAATCATGTCACCGCTTTCGCACC
GATCTCGACACTTCGGCCGCCGCCCTGGCCGCCTTGCGAAATTTGGCCAA
CAACGACGAGAGCGTCAATCAGATTGCCTCGGAGGGAGGCTTAGATCTCG
CGGTACGTGCCTTGGAAGCGCATTGGTTTCATCCTCCTCTGGCCCAAACG
GCCATTGGGCTGTTTCGCAACATCTCTGCCAATGATCGACACAAGACAAG
CTTGTGCAATAACGGTGCTGCGGAATTGATGCTCAAGGCTATGAAAAAGC
ACGGGGGAAAAGTGAAGATTCAAGAACATGGGCTCGCGACGATGGGTGCA
ATGGCTCTGCGGAGCCCTGAAAACTGTAAGCAGCTGGTGGGGCTGGGTGC
GGTGTTGGTGATCTTGCAAGCACTACGCAACCATGCGGAGGCTCGTAGCG
TCCAGAGGCAGGCATGCTTGGCAATCAGGAACATGGTAAGCCGGGAACCG
GAGGTGGGGGAGGCATTTTTGGAGGGGGGAGCGGAACCCTTGTTGAGACT
TGCGGGGAGGTATCAGGAAAGCGTGGATGAGGCATATGCGGCGCTGCGTG
ACTTGAAATGTGATGTAAAGAGAGTGACCGTTGACCCTGTCACAGGGAAG
GTTCAGGATGCAGACCAATTTGGGAGTACCAAGAGTTGTTTCCACCCCGT
GTTTGAGAGTAGTGATAATATCGAGGGGGCAGTGGAAGCCGCTATCAGTG
CGCCGTCTAACTCGTATCGATTTTAA back to topCoding sequence (CDS) from alignment at chr2:503936..505561- >NO02G01720.1 ID=NO02G01720.1|Name=NO02G01720.1|organism=Nannochloropsis oceanica|type=CDS|length=1626bp|location=Sequence derived from alignment at chr2:503936..505561- (Nannochloropsis oceanica) ATGACCTCCACCACCGCGCCTGCCGCGGGGCCCGCAAAGAAGAGAATATC GCAAGTCACGTTCGATGAGACGGTGCGGGAGAACATGGAGGAGTTTGAGT TAGAGCGGGAAGAGGCCGTGACGGATGCTGTTCGGCAGTTCACGTCGCAA GGCGTTGACTTGGGCAACATTTGCGTGGCCTTGCACGAATGCGACGGGCA TTGGCTCAAGGAGGTCGATGCACAATTGACTTTCTTCATAACGTGCTTAG ATAATGGGGTCCAGGTAGCGTTGCCGGCATCGTGGGACCGTGTGGGGACG GTGGTGGCTTTGCGGGCTCTGCACGCGGCTTTGACGAATGCGGACGCTGA CAAAGCAGCGAATGCGCGGAAGCTGATGGGCTCTAAAGGAACGGTGAATG TGGTGGCACGGTTATGGCAAGAACATCAGGAAGAAGCTGCTGCTGACGAT GATAGTGCTGTGGTCGATGCCCGCATCCTGGCACTGGCCGTGACGCAGGC TCTGTGTAGTGGAGGCTCTGCGGGGGAGGCAAGCCGTGACATGTTCTGGC CGACAAGCATGCGAATGCTGTGCAATGCTGCCCAACAAGCATATTCACAA CAGGACCGAGCGTTCTATTTGCCTTTCCTTTCCTTGGCCCGTGTGTTGTG CACCCGGGCGGAAGATAACAAGGTGCATTATGTGCGATATGGTGGACTAG ACCTATTAGTAGGCGCATTGAAAGATGATCCCTGGGCCAGCGACCGCAAT ATCGTCTGCGAGACCTGCAAAGCTCTAAAGGCTGTGACTGCAACTGATGA CTTTAGGAAGGATTTCAGCGCCTCACACACCCATACCCGCGCTTTGGTCG GCAAGGGTGCCATCCCCCTCCTCCTTCAATCATGTCACCGCTTTCGCACC GATCTCGACACTTCGGCCGCCGCCCTGGCCGCCTTGCGAAATTTGGCCAA CAACGACGAGAGCGTCAATCAGATTGCCTCGGAGGGAGGCTTAGATCTCG CGGTACGTGCCTTGGAAGCGCATTGGTTTCATCCTCCTCTGGCCCAAACG GCCATTGGGCTGTTTCGCAACATCTCTGCCAATGATCGACACAAGACAAG CTTGTGCAATAACGGTGCTGCGGAATTGATGCTCAAGGCTATGAAAAAGC ACGGGGGAAAAGTGAAGATTCAAGAACATGGGCTCGCGACGATGGGTGCA ATGGCTCTGCGGAGCCCTGAAAACTGTAAGCAGCTGGTGGGGCTGGGTGC GGTGTTGGTGATCTTGCAAGCACTACGCAACCATGCGGAGGCTCGTAGCG TCCAGAGGCAGGCATGCTTGGCAATCAGGAACATGGTAAGCCGGGAACCG GAGGTGGGGGAGGCATTTTTGGAGGGGGGAGCGGAACCCTTGTTGAGACT TGCGGGGAGGTATCAGGAAAGCGTGGATGAGGCATATGCGGCGCTGCGTG ACTTGAAATGTGATGTAAAGAGAGTGACCGTTGACCCTGTCACAGGGAAG GTTCAGGATGCAGACCAATTTGGGAGTACCAAGAGTTGTTTCCACCCCGT GTTTGAGAGTAGTGATAATATCGAGGGGGCAGTGGAAGCCGCTATCAGTG CGCCGTCTAACTCGTATCGATTTTAA back to top
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